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The map label for this gene is ymdC [H]

Identifier: 50085022

GI number: 50085022

Start: 1873639

End: 1875201

Strand: Direct

Name: ymdC [H]

Synonym: ACIAD1881

Alternate gene names: 50085022

Gene position: 1873639-1875201 (Clockwise)

Preceding gene: 50085018

Following gene: 50085028

Centisome position: 52.07

GC content: 36.28

Gene sequence:

>1563_bases
ATGAACTTAAAAAATAATTTATCTCATACATTAAAAATATATTTTAGCTTTATCGTCTTTTGTCTCATATGTTGGACACC
TTTAAAAACTTTTGCATCTCAGGGTGAGAAAATTTTGATAAATAGCCAATGGTTAAATGATCCACACACTGACGAAAATC
TTCAAAAGGGTTTGACTGCCTACATTCCTCTTGATGATGCATTTATTAGTATTGCTTCTCGTATTTATCTGATTAGGCAT
GCAAAACATCAAATTGATTTACAATACTATATTTGGCATAACGATTTCGTTGGTCAGTTAATATTAAACGAATTATTGAA
AGCAGCTGATCGTGGCGTCAAAATTCGCCTATTAATTGACGATCAGAACGGAACGCGACTCGATTCTACCTTCCAAGCAC
TGTTACAACATCCTCTTTTTGAAATTAAGGTATTTAACCCTTATAAATTTCGTAAGCTTAGATTTGTAGATTTTTTATTT
CGTCCCAATCAAATCAATCACCGCATGCATAACAAATTGATTATTGCGGACAACACAATTGCGGTGACTGGAGGACGCAA
TATCAGCAGTGAATACTTTGATGCCAGCTATCAATTCCAGTTTACAGATCTCGATATTTTGTTTTATGGTACAGCCGCAT
CTCAGGCAGAGAAAGTCTTTCAAACTTTCTGGGATAGTCCACTCAGTGTCACTACACAAAAACTCATCACGAAAGGTCAG
CCAAATGATCTACTTCAATTGCGATCTAAATATAAGGAAATCGAACGTGTTGATACGCCTACGGAAGATAAAATCAATGA
AGCTCAAATTGAACTGAATGAAGCTTTAAAACAACGTTATTCGGTAAAATGGGCTAAGGCGCATTTTGTGGCAGATTCTC
CTAAAAAAATACACGGGCATGCTATAGGCAATGAACTTATCTATAATCAGATGTTTAGTATTATGGGACATCCCCAAAAA
CATCTGGAACTTGTATCAGCTTACTTTGTTCCCACTCAGGCTGGTACACAATACTTAAGCAATTTAAGCCAACAAGACGT
TAAGATAAGGGTTTTAACCAATTCTTTTGCTGCAAATGATGTCGCTATTGTGCATGCCTTTTATAGTCAATATCGAAAAG
AGCTTATCAAGAACGGCATTCAACTCTACGAATTCAAACCTATCATTGATCGAAAAGAACCTACTTGGTATGAAAAAATG
ACAGGTCGTGTGATTCCTGCCAAAGGTAAGAAAAGCTCGAGCCTGCATGCAAAGTTTTTTGATGTAGATGGAAAAGTCTT
TATTGGTTCTTTTAATTTCGATCCACGTTCTGCATATCTGAATACCGAAGTGGGATTGGTGGTTGAATCTGAAGATCTTC
AAAACGAAATTACCAAAGTTCTTGATGAATACTTGCCTACGATTGCATACCAATTAAAACTCGACAAAAATGGCAATCTC
GTATGGTTAGATCACAATGCAGATGGCCAAACCATCGAATATCATCATGATCCAGAAACCACCAGATTTCAGCGTTTTAT
GATGAAAGCTGTGTCATATTTACCCATTGAATGGATGATGTAG

Upstream 100 bases:

>100_bases
ATAGTTAAATATTTGACTGTTAAAATTGTTTCAAATTTGGCACAGGAATAGATTATGTCTTATAGTGATTAAAAAGAATG
AAAGGATTCCCGAACATCAG

Downstream 100 bases:

>100_bases
TGAACTCATAAAAATCCCAGATTTTTAAATAACACTGCATAAGCTTCGGCTTTTTTCTCAAGTGCAAGTGGATACGCTCG
TGAAGAAGATGGCATACGGT

Product: phospholipase D protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MNLKNNLSHTLKIYFSFIVFCLICWTPLKTFASQGEKILINSQWLNDPHTDENLQKGLTAYIPLDDAFISIASRIYLIRH
AKHQIDLQYYIWHNDFVGQLILNELLKAADRGVKIRLLIDDQNGTRLDSTFQALLQHPLFEIKVFNPYKFRKLRFVDFLF
RPNQINHRMHNKLIIADNTIAVTGGRNISSEYFDASYQFQFTDLDILFYGTAASQAEKVFQTFWDSPLSVTTQKLITKGQ
PNDLLQLRSKYKEIERVDTPTEDKINEAQIELNEALKQRYSVKWAKAHFVADSPKKIHGHAIGNELIYNQMFSIMGHPQK
HLELVSAYFVPTQAGTQYLSNLSQQDVKIRVLTNSFAANDVAIVHAFYSQYRKELIKNGIQLYEFKPIIDRKEPTWYEKM
TGRVIPAKGKKSSSLHAKFFDVDGKVFIGSFNFDPRSAYLNTEVGLVVESEDLQNEITKVLDEYLPTIAYQLKLDKNGNL
VWLDHNADGQTIEYHHDPETTRFQRFMMKAVSYLPIEWMM

Sequences:

>Translated_520_residues
MNLKNNLSHTLKIYFSFIVFCLICWTPLKTFASQGEKILINSQWLNDPHTDENLQKGLTAYIPLDDAFISIASRIYLIRH
AKHQIDLQYYIWHNDFVGQLILNELLKAADRGVKIRLLIDDQNGTRLDSTFQALLQHPLFEIKVFNPYKFRKLRFVDFLF
RPNQINHRMHNKLIIADNTIAVTGGRNISSEYFDASYQFQFTDLDILFYGTAASQAEKVFQTFWDSPLSVTTQKLITKGQ
PNDLLQLRSKYKEIERVDTPTEDKINEAQIELNEALKQRYSVKWAKAHFVADSPKKIHGHAIGNELIYNQMFSIMGHPQK
HLELVSAYFVPTQAGTQYLSNLSQQDVKIRVLTNSFAANDVAIVHAFYSQYRKELIKNGIQLYEFKPIIDRKEPTWYEKM
TGRVIPAKGKKSSSLHAKFFDVDGKVFIGSFNFDPRSAYLNTEVGLVVESEDLQNEITKVLDEYLPTIAYQLKLDKNGNL
VWLDHNADGQTIEYHHDPETTRFQRFMMKAVSYLPIEWMM
>Mature_520_residues
MNLKNNLSHTLKIYFSFIVFCLICWTPLKTFASQGEKILINSQWLNDPHTDENLQKGLTAYIPLDDAFISIASRIYLIRH
AKHQIDLQYYIWHNDFVGQLILNELLKAADRGVKIRLLIDDQNGTRLDSTFQALLQHPLFEIKVFNPYKFRKLRFVDFLF
RPNQINHRMHNKLIIADNTIAVTGGRNISSEYFDASYQFQFTDLDILFYGTAASQAEKVFQTFWDSPLSVTTQKLITKGQ
PNDLLQLRSKYKEIERVDTPTEDKINEAQIELNEALKQRYSVKWAKAHFVADSPKKIHGHAIGNELIYNQMFSIMGHPQK
HLELVSAYFVPTQAGTQYLSNLSQQDVKIRVLTNSFAANDVAIVHAFYSQYRKELIKNGIQLYEFKPIIDRKEPTWYEKM
TGRVIPAKGKKSSSLHAKFFDVDGKVFIGSFNFDPRSAYLNTEVGLVVESEDLQNEITKVLDEYLPTIAYQLKLDKNGNL
VWLDHNADGQTIEYHHDPETTRFQRFMMKAVSYLPIEWMM

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=469, Percent_Identity=37.5266524520256, Blast_Score=322, Evalue=4e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60386; Mature: 60386

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKNNLSHTLKIYFSFIVFCLICWTPLKTFASQGEKILINSQWLNDPHTDENLQKGLTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCEE
YIPLDDAFISIASRIYLIRHAKHQIDLQYYIWHNDFVGQLILNELLKAADRGVKIRLLID
EECCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEEE
DQNGTRLDSTFQALLQHPLFEIKVFNPYKFRKLRFVDFLFRPNQINHRMHNKLIIADNTI
CCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHEEEEHHHCCCCHHHHHHCCEEEEECCEE
AVTGGRNISSEYFDASYQFQFTDLDILFYGTAASQAEKVFQTFWDSPLSVTTQKLITKGQ
EEECCCCCCHHHCCCEEEEEEEEEEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHCCC
PNDLLQLRSKYKEIERVDTPTEDKINEAQIELNEALKQRYSVKWAKAHFVADSPKKIHGH
CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCH
AIGNELIYNQMFSIMGHPQKHLELVSAYFVPTQAGTQYLSNLSQQDVKIRVLTNSFAAND
HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCC
VAIVHAFYSQYRKELIKNGIQLYEFKPIIDRKEPTWYEKMTGRVIPAKGKKSSSLHAKFF
HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHCCCEECCCCCCCCCCEEEEE
DVDGKVFIGSFNFDPRSAYLNTEVGLVVESEDLQNEITKVLDEYLPTIAYQLKLDKNGNL
ECCCEEEEEEECCCCCCEEECCCEEEEEECHHHHHHHHHHHHHHHCCEEEEEEECCCCCE
VWLDHNADGQTIEYHHDPETTRFQRFMMKAVSYLPIEWMM
EEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEECC
>Mature Secondary Structure
MNLKNNLSHTLKIYFSFIVFCLICWTPLKTFASQGEKILINSQWLNDPHTDENLQKGLTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCEE
YIPLDDAFISIASRIYLIRHAKHQIDLQYYIWHNDFVGQLILNELLKAADRGVKIRLLID
EECCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEEE
DQNGTRLDSTFQALLQHPLFEIKVFNPYKFRKLRFVDFLFRPNQINHRMHNKLIIADNTI
CCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHEEEEHHHCCCCHHHHHHCCEEEEECCEE
AVTGGRNISSEYFDASYQFQFTDLDILFYGTAASQAEKVFQTFWDSPLSVTTQKLITKGQ
EEECCCCCCHHHCCCEEEEEEEEEEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHCCC
PNDLLQLRSKYKEIERVDTPTEDKINEAQIELNEALKQRYSVKWAKAHFVADSPKKIHGH
CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCH
AIGNELIYNQMFSIMGHPQKHLELVSAYFVPTQAGTQYLSNLSQQDVKIRVLTNSFAAND
HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCC
VAIVHAFYSQYRKELIKNGIQLYEFKPIIDRKEPTWYEKMTGRVIPAKGKKSSSLHAKFF
HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHCCCEECCCCCCCCCCEEEEE
DVDGKVFIGSFNFDPRSAYLNTEVGLVVESEDLQNEITKVLDEYLPTIAYQLKLDKNGNL
ECCCEEEEEEECCCCCCEEECCCEEEEEECHHHHHHHHHHHHHHHCCEEEEEEECCCCCE
VWLDHNADGQTIEYHHDPETTRFQRFMMKAVSYLPIEWMM
EEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]