Click here to switch to the map view.

The map label for this gene is yliC [C]

Identifier: 50084675

GI number: 50084675

Start: 1503829

End: 1504980

Strand: Direct

Name: yliC [C]

Synonym: ACIAD1507

Alternate gene names: 50084675

Gene position: 1503829-1504980 (Clockwise)

Preceding gene: 50084674

Following gene: 50084676

Centisome position: 41.79

GC content: 40.62

Gene sequence:

>1152_bases
ATGACAATTCAATCCAGCAAAATAGAAGCATCCATTCAACAACCAGCAATTACCAAGTCATTTGAATTTCCTGCATGGTT
ACCTTGGTTTTTGACACGTTTGGTGTCAGGGATATTGGTTGTTTTTGTTATTAGTCTCGTTGTCTTTATTGCGACACAAG
CACTTCCATCTGACCCAGCTCGCGTCATTTTAGGACCAGAAGCATCTGAAGCGACGGTACAAATACTTCGTGAACAATTG
GGACTGAATGATCCGATATTGCTTCAATACTGGCATTGGTTGAGTCAATTATTGCAAGGTAATTTTGGGCAATCGATTGA
TTCCAACGTGCCTGTTTTACAAATTATTCAGAATTATTTTGGTAATACAGTTGCGCTTACGAGTCTCGTAATTGTTGTTA
CTGTACCGCTTTCAGTCGTGTTAGGTGTGTGGCTCTCGCTTCATCGTGATAGTAAACTCGACCGAATTGTTGTCTCAAGC
TCTATCGTTTTTAAAGCAGTGCCAGGATTCGTCATTGCGATTTGGTTAATGATGTTTTTTTCAACATCGGTTTTACACGT
ATTGCCTGCTGCATCGCTGTTAATTCCTAATGAGTCGCCTTATAGTCAATTAGAGTTTTTAATTTTACCAATTTTAACTT
TAGCTTTATCACTCACACCTTATCTAATGCGCTTAGTACGTGGTTCTATGATTGATGCATTAGAGTCAGAATATGTAACT
TCTGCACGACTGCGAGGTATTCCTGAGCGCCGGATTATTTGGAAACATGTTTTACCTAATGCATTGGTTCCTGTGGTACA
GGGTACAGCATTGACCATACGAGTTTTGCTGAGTGGTGCTCTCATTATTGAGGTGGTTTTCAGTTACCCTGGCATTGGTA
ATGCGCTCAATGCAGCAATTGAAATGAGAGATATCCCGACCATCCAAGCAATCGTTTTATTGCTCACCATTTGTGTGGTG
ATGGTTAATTTAATTGCAGATTTAATCACGACTTTACTCACTCCAAAAATACGAACTGCAAAAAGACATAAAGCACGTTC
GCCAGGACGCCGTCAGGCATTACGTTTATGGAAATCTGGCCGACCAATTACGGTAAAACCTGTCGATCGTCGCAATGCTC
TAAAGAATATTCAGCAAGGAGGTGGGAAATGA

Upstream 100 bases:

>100_bases
TCCTTGATGCACATTCGAACCAAATTGGTGGTGTAACACCTGATCGCACTGGTTTCGCTGCATGGCGTACAGATGAATTC
TGGCGCAGAGGGTAACCGAT

Downstream 100 bases:

>100_bases
GCTCACTTCATTGGTATCAAAGAAACTTTTTTCAAACATTAATCCGTGAAAGACAAGTACGTTTTGGCTTTGTAGTTACA
ACTCTAGTTTTGATTTTTGC

Product: peptide ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 382

Protein sequence:

>383_residues
MTIQSSKIEASIQQPAITKSFEFPAWLPWFLTRLVSGILVVFVISLVVFIATQALPSDPARVILGPEASEATVQILREQL
GLNDPILLQYWHWLSQLLQGNFGQSIDSNVPVLQIIQNYFGNTVALTSLVIVVTVPLSVVLGVWLSLHRDSKLDRIVVSS
SIVFKAVPGFVIAIWLMMFFSTSVLHVLPAASLLIPNESPYSQLEFLILPILTLALSLTPYLMRLVRGSMIDALESEYVT
SARLRGIPERRIIWKHVLPNALVPVVQGTALTIRVLLSGALIIEVVFSYPGIGNALNAAIEMRDIPTIQAIVLLLTICVV
MVNLIADLITTLLTPKIRTAKRHKARSPGRRQALRLWKSGRPITVKPVDRRNALKNIQQGGGK

Sequences:

>Translated_383_residues
MTIQSSKIEASIQQPAITKSFEFPAWLPWFLTRLVSGILVVFVISLVVFIATQALPSDPARVILGPEASEATVQILREQL
GLNDPILLQYWHWLSQLLQGNFGQSIDSNVPVLQIIQNYFGNTVALTSLVIVVTVPLSVVLGVWLSLHRDSKLDRIVVSS
SIVFKAVPGFVIAIWLMMFFSTSVLHVLPAASLLIPNESPYSQLEFLILPILTLALSLTPYLMRLVRGSMIDALESEYVT
SARLRGIPERRIIWKHVLPNALVPVVQGTALTIRVLLSGALIIEVVFSYPGIGNALNAAIEMRDIPTIQAIVLLLTICVV
MVNLIADLITTLLTPKIRTAKRHKARSPGRRQALRLWKSGRPITVKPVDRRNALKNIQQGGGK
>Mature_382_residues
TIQSSKIEASIQQPAITKSFEFPAWLPWFLTRLVSGILVVFVISLVVFIATQALPSDPARVILGPEASEATVQILREQLG
LNDPILLQYWHWLSQLLQGNFGQSIDSNVPVLQIIQNYFGNTVALTSLVIVVTVPLSVVLGVWLSLHRDSKLDRIVVSSS
IVFKAVPGFVIAIWLMMFFSTSVLHVLPAASLLIPNESPYSQLEFLILPILTLALSLTPYLMRLVRGSMIDALESEYVTS
ARLRGIPERRIIWKHVLPNALVPVVQGTALTIRVLLSGALIIEVVFSYPGIGNALNAAIEMRDIPTIQAIVLLLTICVVM
VNLIADLITTLLTPKIRTAKRHKARSPGRRQALRLWKSGRPITVKPVDRRNALKNIQQGGGK

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=312, Percent_Identity=34.2948717948718, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1789888, Length=322, Percent_Identity=33.5403726708075, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1787761, Length=321, Percent_Identity=30.5295950155763, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787497, Length=316, Percent_Identity=30.6962025316456, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=27.810650887574, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1788504, Length=274, Percent_Identity=28.4671532846715, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1787550, Length=269, Percent_Identity=27.5092936802974, Blast_Score=102, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 42286; Mature: 42155

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIQSSKIEASIQQPAITKSFEFPAWLPWFLTRLVSGILVVFVISLVVFIATQALPSDPA
CCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
RVILGPEASEATVQILREQLGLNDPILLQYWHWLSQLLQGNFGQSIDSNVPVLQIIQNYF
EEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
GNTVALTSLVIVVTVPLSVVLGVWLSLHRDSKLDRIVVSSSIVFKAVPGFVIAIWLMMFF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STSVLHVLPAASLLIPNESPYSQLEFLILPILTLALSLTPYLMRLVRGSMIDALESEYVT
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SARLRGIPERRIIWKHVLPNALVPVVQGTALTIRVLLSGALIIEVVFSYPGIGNALNAAI
HHHHCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
EMRDIPTIQAIVLLLTICVVMVNLIADLITTLLTPKIRTAKRHKARSPGRRQALRLWKSG
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCC
RPITVKPVDRRNALKNIQQGGGK
CCEEECCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TIQSSKIEASIQQPAITKSFEFPAWLPWFLTRLVSGILVVFVISLVVFIATQALPSDPA
CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
RVILGPEASEATVQILREQLGLNDPILLQYWHWLSQLLQGNFGQSIDSNVPVLQIIQNYF
EEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
GNTVALTSLVIVVTVPLSVVLGVWLSLHRDSKLDRIVVSSSIVFKAVPGFVIAIWLMMFF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STSVLHVLPAASLLIPNESPYSQLEFLILPILTLALSLTPYLMRLVRGSMIDALESEYVT
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SARLRGIPERRIIWKHVLPNALVPVVQGTALTIRVLLSGALIIEVVFSYPGIGNALNAAI
HHHHCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
EMRDIPTIQAIVLLLTICVVMVNLIADLITTLLTPKIRTAKRHKARSPGRRQALRLWKSG
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCC
RPITVKPVDRRNALKNIQQGGGK
CCEEECCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]