Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 50084121

GI number: 50084121

Start: 894546

End: 895250

Strand: Direct

Name: yggS [C]

Synonym: ACIAD0913

Alternate gene names: 50084121

Gene position: 894546-895250 (Clockwise)

Preceding gene: 50084118

Following gene: 50084122

Centisome position: 24.86

GC content: 44.54

Gene sequence:

>705_bases
ATGAGAACCCTGTCAATGAATCACTTTAAAGATGCACGAAATCAAGTTCTTCATCAAATTCAGGTCGCCTGTGAGCAGGC
ACAACGTGATCCAGCCACTGTACAGTTATTGGCAGTCTCGAAAACTCATCCAGATTCTGCACTGCGAGAGATGTATCAAC
TTGGGCAGCGCGCTTTTGGTGAAAACTATCTTCAGGAAGCGCTAGATAAAATTGAAGCCCTCGATGATCTCGATATTGAG
TGGCATTTTATTGGTCATGTTCAGCGTAATAAAACTAAGCTTTTGGCAGAAAAGTTCGACTGGGTGCACGGGGTCGATCG
TTTGATCATCGCCGAGCGATTATCTAGCCAGCGTTTGCAGACGCAGCCGCCGTTAAATTTATGCATTCAGGTCAATATTG
ATCATCAGGATTCTAAAGATGGATGCCAGCCTGAAGATGTTGCTCAACTGGTTGAAGAAATCAGTCAGCTTCCTCAGGTA
CGCTTACGCGGAATAATGGTGATACCTGCACCCGATCAGATCACCGCTTTTACTGATGCTAAACAATTGTTTGAACAGGT
TAAATCTCATCATCAACAACCACAGGATTGGGATACGCTCAGCATGGGAATGTCTGGAGATTTACAGCAAGCAATTGCTG
CGGGAGCCAGTATTGTACGTATTGGAACTGCTTTATTTGGTGCTCGAGATTATGCCAAACCTTAA

Upstream 100 bases:

>100_bases
GAAGATCGTCAAAAGGTTTAATTATTTTGTAGAATACTGAGTTGTTTGATTAAAGCTTACCAAGATTTGTGCTTTAGGTT
AAGTAAAAAATACGTTTGAA

Downstream 100 bases:

>100_bases
TACTGAACTTGCGATACCCGATGATTACTTTAGAACATGATTTTATTTAAAAAGGGATATGATTTATTTCTAAAAAATTT
TACGCTTTTTAATCTGTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MRTLSMNHFKDARNQVLHQIQVACEQAQRDPATVQLLAVSKTHPDSALREMYQLGQRAFGENYLQEALDKIEALDDLDIE
WHFIGHVQRNKTKLLAEKFDWVHGVDRLIIAERLSSQRLQTQPPLNLCIQVNIDHQDSKDGCQPEDVAQLVEEISQLPQV
RLRGIMVIPAPDQITAFTDAKQLFEQVKSHHQQPQDWDTLSMGMSGDLQQAIAAGASIVRIGTALFGARDYAKP

Sequences:

>Translated_234_residues
MRTLSMNHFKDARNQVLHQIQVACEQAQRDPATVQLLAVSKTHPDSALREMYQLGQRAFGENYLQEALDKIEALDDLDIE
WHFIGHVQRNKTKLLAEKFDWVHGVDRLIIAERLSSQRLQTQPPLNLCIQVNIDHQDSKDGCQPEDVAQLVEEISQLPQV
RLRGIMVIPAPDQITAFTDAKQLFEQVKSHHQQPQDWDTLSMGMSGDLQQAIAAGASIVRIGTALFGARDYAKP
>Mature_234_residues
MRTLSMNHFKDARNQVLHQIQVACEQAQRDPATVQLLAVSKTHPDSALREMYQLGQRAFGENYLQEALDKIEALDDLDIE
WHFIGHVQRNKTKLLAEKFDWVHGVDRLIIAERLSSQRLQTQPPLNLCIQVNIDHQDSKDGCQPEDVAQLVEEISQLPQV
RLRGIMVIPAPDQITAFTDAKQLFEQVKSHHQQPQDWDTLSMGMSGDLQQAIAAGASIVRIGTALFGARDYAKP

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=239, Percent_Identity=36.8200836820084, Blast_Score=129, Evalue=3e-30,
Organism=Escherichia coli, GI1789321, Length=236, Percent_Identity=47.8813559322034, Blast_Score=218, Evalue=3e-58,
Organism=Caenorhabditis elegans, GI17533025, Length=212, Percent_Identity=36.7924528301887, Blast_Score=106, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6319435, Length=216, Percent_Identity=37.962962962963, Blast_Score=118, Evalue=8e-28,
Organism=Drosophila melanogaster, GI45550861, Length=251, Percent_Identity=35.8565737051793, Blast_Score=124, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26451; Mature: 26451

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLSMNHFKDARNQVLHQIQVACEQAQRDPATVQLLAVSKTHPDSALREMYQLGQRAFG
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC
ENYLQEALDKIEALDDLDIEWHFIGHVQRNKTKLLAEKFDWVHGVDRLIIAERLSSQRLQ
HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TQPPLNLCIQVNIDHQDSKDGCQPEDVAQLVEEISQLPQVRLRGIMVIPAPDQITAFTDA
CCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCHHHHHCCEEEECCCCCHHHHHHH
KQLFEQVKSHHQQPQDWDTLSMGMSGDLQQAIAAGASIVRIGTALFGARDYAKP
HHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHCCCHHHHHHHHHHCCHHCCCC
>Mature Secondary Structure
MRTLSMNHFKDARNQVLHQIQVACEQAQRDPATVQLLAVSKTHPDSALREMYQLGQRAFG
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC
ENYLQEALDKIEALDDLDIEWHFIGHVQRNKTKLLAEKFDWVHGVDRLIIAERLSSQRLQ
HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TQPPLNLCIQVNIDHQDSKDGCQPEDVAQLVEEISQLPQVRLRGIMVIPAPDQITAFTDA
CCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCHHHHHCCEEEECCCCCHHHHHHH
KQLFEQVKSHHQQPQDWDTLSMGMSGDLQQAIAAGASIVRIGTALFGARDYAKP
HHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHCCCHHHHHHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]