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The map label for this gene is yeaM [H]

Identifier: 50083476

GI number: 50083476

Start: 189144

End: 189923

Strand: Reverse

Name: yeaM [H]

Synonym: ACIAD0194

Alternate gene names: 50083476

Gene position: 189923-189144 (Counterclockwise)

Preceding gene: 50083477

Following gene: 50083475

Centisome position: 5.28

GC content: 41.54

Gene sequence:

>780_bases
ATGACCATGATCTCTCCCATAAAGATGAATATGCCAACTGATGATCTGACTCGGTTAATTGAGCTTCATGAGTTCTTTTT
CCATCCTCATGATCGCGTTCAGCCACATTCTTCATTATGGGGAGATTTTAATTTTAGTCTAAACGGCATTTTACAGATTC
AGGTTGATGATTCGACTTATCTGGCACCACCCAATTATGGATTATGGCTTCCTCCCAAGACCAGCCATTACTGTGTCAGC
ATAGATCAGGTCACTCATTTTGTTTGTATCCGTCTACATCCCAAGTTATGTCAGCTTTTTAGCGCTAATCCCAAAACTTT
AGAAATTCGTCCTTTTTTTCATGCACTGGTTAAGGAACTACTTGATCAATCCAGCCGAACTGACCAGGTCACTTATCATC
ATCTGCTACAAGTGCTTTTTGATCAGATGCAGCAGGCCAGATGTTATGACCACTACCTTCCCTACACTTTACATGCTGTG
TTAAAACCTGTTCTGCTTGATTTATCCAATGCCACGCTTTTTCATCTGAGCCTACAGCAGATATTGGCAAAATCTGATAT
CAGTGAACGTCATGCACTACGACTCGGCCAACAAGAGTTGAATATGACACTTTCGGAATGGCGCAATCGTGCCAAAATCG
TGCACGCGATTGCACAGATCAGGCAGGGACTTTCAATTAAAAGAATTGCACTGGAACTGGGCTATCAGCATAGCTCTAGC
TTTATTGAATTTTTTAAACGATATACAGGACAAACGCCGTTACAACTCAAAGACAGCTAA

Upstream 100 bases:

>100_bases
GAATTTTATTATACTGGCGTTGATTAGTGTTTTTACGCTGGCAAAAGGTTTAAATAATCCTAAGCTTACTTGTGAATCAT
AATTTATCCTCGTATCCAAT

Downstream 100 bases:

>100_bases
ATACTGTAGTCCTGATAATTTGAGAATATGTTATACATAGCCAGGATTTAGGCCTGTGTCCAATCGAGACAAAAGCCTTC
ACTTGATGAAAAATAATTTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MTMISPIKMNMPTDDLTRLIELHEFFFHPHDRVQPHSSLWGDFNFSLNGILQIQVDDSTYLAPPNYGLWLPPKTSHYCVS
IDQVTHFVCIRLHPKLCQLFSANPKTLEIRPFFHALVKELLDQSSRTDQVTYHHLLQVLFDQMQQARCYDHYLPYTLHAV
LKPVLLDLSNATLFHLSLQQILAKSDISERHALRLGQQELNMTLSEWRNRAKIVHAIAQIRQGLSIKRIALELGYQHSSS
FIEFFKRYTGQTPLQLKDS

Sequences:

>Translated_259_residues
MTMISPIKMNMPTDDLTRLIELHEFFFHPHDRVQPHSSLWGDFNFSLNGILQIQVDDSTYLAPPNYGLWLPPKTSHYCVS
IDQVTHFVCIRLHPKLCQLFSANPKTLEIRPFFHALVKELLDQSSRTDQVTYHHLLQVLFDQMQQARCYDHYLPYTLHAV
LKPVLLDLSNATLFHLSLQQILAKSDISERHALRLGQQELNMTLSEWRNRAKIVHAIAQIRQGLSIKRIALELGYQHSSS
FIEFFKRYTGQTPLQLKDS
>Mature_258_residues
TMISPIKMNMPTDDLTRLIELHEFFFHPHDRVQPHSSLWGDFNFSLNGILQIQVDDSTYLAPPNYGLWLPPKTSHYCVSI
DQVTHFVCIRLHPKLCQLFSANPKTLEIRPFFHALVKELLDQSSRTDQVTYHHLLQVLFDQMQQARCYDHYLPYTLHAVL
KPVLLDLSNATLFHLSLQQILAKSDISERHALRLGQQELNMTLSEWRNRAKIVHAIAQIRQGLSIKRIALELGYQHSSSF
IEFFKRYTGQTPLQLKDS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=223, Percent_Identity=26.457399103139, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30159; Mature: 30028

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMISPIKMNMPTDDLTRLIELHEFFFHPHDRVQPHSSLWGDFNFSLNGILQIQVDDSTY
CCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEEECEEEEEEECCCEE
LAPPNYGLWLPPKTSHYCVSIDQVTHFVCIRLHPKLCQLFSANPKTLEIRPFFHALVKEL
ECCCCCCEECCCCCCCEEEEHHHHHHHHHEEECHHHHHHHCCCCCEEEECHHHHHHHHHH
LDQSSRTDQVTYHHLLQVLFDQMQQARCYDHYLPYTLHAVLKPVLLDLSNATLFHLSLQQ
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
ILAKSDISERHALRLGQQELNMTLSEWRNRAKIVHAIAQIRQGLSIKRIALELGYQHSSS
HHHHCCCHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHH
FIEFFKRYTGQTPLQLKDS
HHHHHHHHCCCCCEEECCC
>Mature Secondary Structure 
TMISPIKMNMPTDDLTRLIELHEFFFHPHDRVQPHSSLWGDFNFSLNGILQIQVDDSTY
CCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEEECEEEEEEECCCEE
LAPPNYGLWLPPKTSHYCVSIDQVTHFVCIRLHPKLCQLFSANPKTLEIRPFFHALVKEL
ECCCCCCEECCCCCCCEEEEHHHHHHHHHEEECHHHHHHHCCCCCEEEECHHHHHHHHHH
LDQSSRTDQVTYHHLLQVLFDQMQQARCYDHYLPYTLHAVLKPVLLDLSNATLFHLSLQQ
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
ILAKSDISERHALRLGQQELNMTLSEWRNRAKIVHAIAQIRQGLSIKRIALELGYQHSSS
HHHHCCCHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHH
FIEFFKRYTGQTPLQLKDS
HHHHHHHHCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]