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The map label for this gene is rirA [H]

Identifier: 49475376

GI number: 49475376

Start: 683549

End: 684016

Strand: Reverse

Name: rirA [H]

Synonym: BH05830

Alternate gene names: 49475376

Gene position: 684016-683549 (Counterclockwise)

Preceding gene: 49475384

Following gene: 49475375

Centisome position: 35.42

GC content: 36.11

Gene sequence:

>468_bases
ATGCGGTTAACAAAACAGACAAATTATGCCCTCAGGATTCTCATGTATTGTGCAGATAATCAGGAATCTCTTAGTCGTAT
TCCAGAAATTGCCAAAGCATATGCTGTTTCTGAACTTTTTTTATTTAAAATCCTTCAACCACTTGTTGAAGCAGGTTTTG
TAAAAACAGTACGAGGACGCAATGGTGGCGTTAAACTGGCCAAACCTGCAGCAGAGATTTCGGTAGCCGATGTTGTAAAA
GTAACAGAAGATAACTTTTCCATGGCAGAATGTTTTGATAATGCAAAATCTAATTGCCCATTGATCGATTTTTGTAGCTT
AAATACCGCACTTCAAAAAGCATTAAATGCTTTTTTTGATGTATTATCCGTGATATCTCTTGCTGATCTGCAACGCCCAT
CCTTTCGAAATCAATTAAAGATTGATAATCGTGAAATAATCAACTCAAATCATGTGAAAGGCAACTAA

Upstream 100 bases:

>100_bases
CAAGGCCACATTTAAAATATAGCCAATAAAGAACTTCTACATTTTCCGAAATATATTTAAAATAAAAACGCTTTCGGTAA
TATTTTACAGAGGAGATGAG

Downstream 100 bases:

>100_bases
GTAAAACATAAGGAAAACCAACCATTTCTATTGCAGCAGTCATATTAGCCGCTGGACGCGGTAAAAGAGCAGGATCTCTT
CCAAAAAAACCAAAACAATA

Product: iron-responsive transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MRLTKQTNYALRILMYCADNQESLSRIPEIAKAYAVSELFLFKILQPLVEAGFVKTVRGRNGGVKLAKPAAEISVADVVK
VTEDNFSMAECFDNAKSNCPLIDFCSLNTALQKALNAFFDVLSVISLADLQRPSFRNQLKIDNREIINSNHVKGN

Sequences:

>Translated_155_residues
MRLTKQTNYALRILMYCADNQESLSRIPEIAKAYAVSELFLFKILQPLVEAGFVKTVRGRNGGVKLAKPAAEISVADVVK
VTEDNFSMAECFDNAKSNCPLIDFCSLNTALQKALNAFFDVLSVISLADLQRPSFRNQLKIDNREIINSNHVKGN
>Mature_155_residues
MRLTKQTNYALRILMYCADNQESLSRIPEIAKAYAVSELFLFKILQPLVEAGFVKTVRGRNGGVKLAKPAAEISVADVVK
VTEDNFSMAECFDNAKSNCPLIDFCSLNTALQKALNAFFDVLSVISLADLQRPSFRNQLKIDNREIINSNHVKGN

Specific function: Required for growth utilizing PHB cycle intermediates [H]

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790621, Length=131, Percent_Identity=39.6946564885496, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 17257; Mature: 17257

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLTKQTNYALRILMYCADNQESLSRIPEIAKAYAVSELFLFKILQPLVEAGFVKTVRGR
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NGGVKLAKPAAEISVADVVKVTEDNFSMAECFDNAKSNCPLIDFCSLNTALQKALNAFFD
CCCEEEECCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHH
VLSVISLADLQRPSFRNQLKIDNREIINSNHVKGN
HHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure
MRLTKQTNYALRILMYCADNQESLSRIPEIAKAYAVSELFLFKILQPLVEAGFVKTVRGR
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NGGVKLAKPAAEISVADVVKVTEDNFSMAECFDNAKSNCPLIDFCSLNTALQKALNAFFD
CCCEEEECCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHH
VLSVISLADLQRPSFRNQLKIDNREIINSNHVKGN
HHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10735852; 11481430 [H]