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The map label for this gene is dapD [H]

Identifier: 49474894

GI number: 49474894

Start: 98477

End: 99325

Strand: Reverse

Name: dapD [H]

Synonym: BH00720

Alternate gene names: 49474894

Gene position: 99325-98477 (Counterclockwise)

Preceding gene: 49474896

Following gene: 49474888

Centisome position: 5.14

GC content: 40.05

Gene sequence:

>849_bases
ATGACTGATCTCACACAACTTGAAATGATTATTGAAAAAGCATTTGACGACCGCAACTCTATCAATACAACCACTAAGGG
TGAAATTCTTGAGAGTGTCGAACATGCGTTAAACCTTCTTGATAAAGGTGAAGTCCGTGTTGTAAAACGTCAAAAAAATG
GAAAATGGCACGTTCATCAATGGTTGAAAAAAGCCGTTCTTCTTTCTTTTCGGCTCAATCCTATGCAAATTATGACCGGT
GGAGTAAATGGAACATCTTGGTGGGATAAAGTCCCTTCAAAATTTTCTCATTGGCAAGAAGCTGACTTTAAAAAAGCGGA
TTTCCGTTCCGTTCCTGGAGCGATTGTACGCCATTCTGCTTATATTGCACCCAATGTTATTCTGATGCCATCCTTTGTCA
ACCTTGGTGCTTTTGTTGATGAAGGAACAATGGTCGATACATGGGCCACTGTTGGTTCTTGTGCACAAATTGGCAAACAT
GTTCATCTTTCTGGTGGTGTTGGTATTGGAGGTGTTTTAGAACCACTGCAAGCAAACCCAACGATTATTGAAGATCATTG
TTTTATTGGTGCACGATCTGAAGTCGTTGAAGGCTGTATTATTCGTGAAGGCTCTGTTTTAGGAATGGGAGTCTTTATTG
GAAAATCTACAAAAATTATTGACCGTACAACAGGTGAAATTTTTATAGGCGAAGTCCCTCCCTATTCTGTCGTTGTTCCA
GGTTCTCTTCCCGGAAAACCACTCCCAAACGGTGAAATAGGCCCTAATCTTTATTGTGCTGTTATCGTGAAACGCGTTGA
CCAAAAAACACGAGAAAAAACATCTATTAATGATCTTTTGCGTGACTAA

Upstream 100 bases:

>100_bases
TCCTGCTTCCTTATCGTTTTATTGACTGAATACATTTCTTCGCGTAGGTCATAAAGCAATAAATCCTGAAGCTTTCAACT
TGTTTAACGGAACTCTGGTT

Downstream 100 bases:

>100_bases
AGTTTACTCTTCAAAAATCTTTGCTAATCAATAAAATACAAAGCAATCAATAAGGGGGGATACTCCCTTATTTCATTATT
TATTCATTTTGAGCGCTTGA

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MTDLTQLEMIIEKAFDDRNSINTTTKGEILESVEHALNLLDKGEVRVVKRQKNGKWHVHQWLKKAVLLSFRLNPMQIMTG
GVNGTSWWDKVPSKFSHWQEADFKKADFRSVPGAIVRHSAYIAPNVILMPSFVNLGAFVDEGTMVDTWATVGSCAQIGKH
VHLSGGVGIGGVLEPLQANPTIIEDHCFIGARSEVVEGCIIREGSVLGMGVFIGKSTKIIDRTTGEIFIGEVPPYSVVVP
GSLPGKPLPNGEIGPNLYCAVIVKRVDQKTREKTSINDLLRD

Sequences:

>Translated_282_residues
MTDLTQLEMIIEKAFDDRNSINTTTKGEILESVEHALNLLDKGEVRVVKRQKNGKWHVHQWLKKAVLLSFRLNPMQIMTG
GVNGTSWWDKVPSKFSHWQEADFKKADFRSVPGAIVRHSAYIAPNVILMPSFVNLGAFVDEGTMVDTWATVGSCAQIGKH
VHLSGGVGIGGVLEPLQANPTIIEDHCFIGARSEVVEGCIIREGSVLGMGVFIGKSTKIIDRTTGEIFIGEVPPYSVVVP
GSLPGKPLPNGEIGPNLYCAVIVKRVDQKTREKTSINDLLRD
>Mature_281_residues
TDLTQLEMIIEKAFDDRNSINTTTKGEILESVEHALNLLDKGEVRVVKRQKNGKWHVHQWLKKAVLLSFRLNPMQIMTGG
VNGTSWWDKVPSKFSHWQEADFKKADFRSVPGAIVRHSAYIAPNVILMPSFVNLGAFVDEGTMVDTWATVGSCAQIGKHV
HLSGGVGIGGVLEPLQANPTIIEDHCFIGARSEVVEGCIIREGSVLGMGVFIGKSTKIIDRTTGEIFIGEVPPYSVVVPG
SLPGKPLPNGEIGPNLYCAVIVKRVDQKTREKTSINDLLRD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=279, Percent_Identity=61.6487455197133, Blast_Score=313, Evalue=9e-87,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 30939; Mature: 30808

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLTQLEMIIEKAFDDRNSINTTTKGEILESVEHALNLLDKGEVRVVKRQKNGKWHVHQ
CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
WLKKAVLLSFRLNPMQIMTGGVNGTSWWDKVPSKFSHWQEADFKKADFRSVPGAIVRHSA
HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHCCH
YIAPNVILMPSFVNLGAFVDEGTMVDTWATVGSCAQIGKHVHLSGGVGIGGVLEPLQANP
HHCCCEEEECCHHHHCCEECCCCEEEHHHHHHHHHHHCCEEEECCCCCCCHHHCCCCCCC
TIIEDHCFIGARSEVVEGCIIREGSVLGMGVFIGKSTKIIDRTTGEIFIGEVPPYSVVVP
CEEECCEEECCHHHHHHHHEEECCCEEEEEEEECCCCEEEECCCCCEEEECCCCCEEEEC
GSLPGKPLPNGEIGPNLYCAVIVKRVDQKTREKTSINDLLRD
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TDLTQLEMIIEKAFDDRNSINTTTKGEILESVEHALNLLDKGEVRVVKRQKNGKWHVHQ
CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
WLKKAVLLSFRLNPMQIMTGGVNGTSWWDKVPSKFSHWQEADFKKADFRSVPGAIVRHSA
HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHCCH
YIAPNVILMPSFVNLGAFVDEGTMVDTWATVGSCAQIGKHVHLSGGVGIGGVLEPLQANP
HHCCCEEEECCHHHHCCEECCCCEEEHHHHHHHHHHHCCEEEECCCCCCCHHHCCCCCCC
TIIEDHCFIGARSEVVEGCIIREGSVLGMGVFIGKSTKIIDRTTGEIFIGEVPPYSVVVP
CEEECCEEECCHHHHHHHHEEECCCEEEEEEEECCCCEEEECCCCCEEEECCCCCEEEEC
GSLPGKPLPNGEIGPNLYCAVIVKRVDQKTREKTSINDLLRD
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA