| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46447160
Identifier: 46447160
GI number: 46447160
Start: 1830167
End: 1831660
Strand: Direct
Name: 46447160
Synonym: pc1526
Alternate gene names: NA
Gene position: 1830167-1831660 (Clockwise)
Preceding gene: 46447159
Following gene: 46447163
Centisome position: 75.8
GC content: 33.27
Gene sequence:
>1494_bases ATGACTATTAATTCTAACTCTCTCTGGGCTGAACAACCAGAGCCTTTATCTATAGCTCTTTCACCTCCATTTTCTTCTAT AAATTTACAAAAAGCTTCTCTTGTTGATAAAGCGAATTCTTTCGAAAAAACGAATGAAGATTTTATTTCTTCCATCACCC CTTCGGATTTGCCAACTTTAATAGAGCCTAATAGCTTAACGCTTCAAACAACTTCCCTGCAAAAATTGCTCGAAAAAAAG GTTCAAGGAGCAACTGAAATTGTGGAAGAAGCTTTAAAGCTTTTAAATCCTAATTTGACTGAGAAAACGAACAATACGCT TTCAAAAGAAGTCATCGAGATGAAAGATTCTTTGCAAACTTTCTTAAAATTGATGGATACTGCCCTAACCCATTTTCATC CCATACGAAGTAAAATGGATTTTCTAGAAACCTATGATAGCCGGGCATTAGTCAACGCAATACTAAGATTATCAGAAATA CGCGTACGCTTTTCGCGAGAAAATAATTCTTTTCAATCTCTTTTTAAAACACTACCTGCCGCACAAATTAAGATTTTAGC CCCTCTTATAAAGTTTACTTTCGAAGAAATTTGTCAACCCCTTTTAAAATTAAACGAAGAAAAAAAAGTTTTAGGTCACG ATGGAAAGATAAACGAAGATCACATGGACACATTTAAACTATTTTGGAAATCATTTTTAAATAAGGAAATTAGTTTCGAG CAAAAAGAAATTCACCCTTTAATTGCTCAAAATCTAAGTTTTCTTCCTCTTCCGCAACTCGCTAATAAAATGCTTTCTGA ATGGTTATTAGAATCATCATTACTAAAACCTAATTCTAAAGAAAAAGAAACTCTGGTTACTAATTCTCCCGTCGAATTCA ATATCTTACCTTTTGATATTCAGCAAACTCTCGATTTACTGCTTATCAAAATTATCATTCATCAAGCTCTAGGTTTTGTG ATGATTCACCAAATCAATCCATTATTTGACCCCTTTGATTTTGGGCTTCAGGTTATTCATCAATGGTTGAAGGAACGGAT AGCCGAACTACTGACTAACGATATCGACGGTTATACATCTTTAGGTACAGCGTTAGAAAAAAATCTTATTAAAAAAAGCT TAATTGTTTTTGCATTGATTATTTCGATTGGTTATGCAGAGCAAAGCCATTCCTCAAGAATCAAAATAGCTCAAACCCTA AAAAAAATAGCTTCTCATTCTACTTTACACGAGCCTTTTTTTTATGCTAATGCTGCTCTCATTTTAATCCAGGGATGTGA AAAAGAGGGAAATCAATTAAGGATTCAACAATTTATTCGCTACCTTGCGAAAGAAACAGAAATTAACGGCGAAGACATGG AAAAATGGAGAGTACTTCAATATTTATTAATTGAGATGTTGAAAAAAATTTTAACAATTTCAAACCATCCCATCTCTTCG GATGTCGATCCTCTTCATGAAGAAAACTATTTTTCTATGATCATTCAAGGGTAA
Upstream 100 bases:
>100_bases GCGCAATTAAATTCTCAATACTCTGAAATTCAAAAACGAGCGGAGATGACATTAGAAACATTAATGCCTAGTCAACAAAA AACAAAACAGCCGAGGCATC
Downstream 100 bases:
>100_bases ACTAGGGAAGAATAAATCCGTTTAAAAAAAATAAGTTGTCGTTTTTTTTAAACGGATCCTTCGTTTTAAAAAGAGAATTT TAATCCAAAATAGTACTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 497; Mature: 496
Protein sequence:
>497_residues MTINSNSLWAEQPEPLSIALSPPFSSINLQKASLVDKANSFEKTNEDFISSITPSDLPTLIEPNSLTLQTTSLQKLLEKK VQGATEIVEEALKLLNPNLTEKTNNTLSKEVIEMKDSLQTFLKLMDTALTHFHPIRSKMDFLETYDSRALVNAILRLSEI RVRFSRENNSFQSLFKTLPAAQIKILAPLIKFTFEEICQPLLKLNEEKKVLGHDGKINEDHMDTFKLFWKSFLNKEISFE QKEIHPLIAQNLSFLPLPQLANKMLSEWLLESSLLKPNSKEKETLVTNSPVEFNILPFDIQQTLDLLLIKIIIHQALGFV MIHQINPLFDPFDFGLQVIHQWLKERIAELLTNDIDGYTSLGTALEKNLIKKSLIVFALIISIGYAEQSHSSRIKIAQTL KKIASHSTLHEPFFYANAALILIQGCEKEGNQLRIQQFIRYLAKETEINGEDMEKWRVLQYLLIEMLKKILTISNHPISS DVDPLHEENYFSMIIQG
Sequences:
>Translated_497_residues MTINSNSLWAEQPEPLSIALSPPFSSINLQKASLVDKANSFEKTNEDFISSITPSDLPTLIEPNSLTLQTTSLQKLLEKK VQGATEIVEEALKLLNPNLTEKTNNTLSKEVIEMKDSLQTFLKLMDTALTHFHPIRSKMDFLETYDSRALVNAILRLSEI RVRFSRENNSFQSLFKTLPAAQIKILAPLIKFTFEEICQPLLKLNEEKKVLGHDGKINEDHMDTFKLFWKSFLNKEISFE QKEIHPLIAQNLSFLPLPQLANKMLSEWLLESSLLKPNSKEKETLVTNSPVEFNILPFDIQQTLDLLLIKIIIHQALGFV MIHQINPLFDPFDFGLQVIHQWLKERIAELLTNDIDGYTSLGTALEKNLIKKSLIVFALIISIGYAEQSHSSRIKIAQTL KKIASHSTLHEPFFYANAALILIQGCEKEGNQLRIQQFIRYLAKETEINGEDMEKWRVLQYLLIEMLKKILTISNHPISS DVDPLHEENYFSMIIQG >Mature_496_residues TINSNSLWAEQPEPLSIALSPPFSSINLQKASLVDKANSFEKTNEDFISSITPSDLPTLIEPNSLTLQTTSLQKLLEKKV QGATEIVEEALKLLNPNLTEKTNNTLSKEVIEMKDSLQTFLKLMDTALTHFHPIRSKMDFLETYDSRALVNAILRLSEIR VRFSRENNSFQSLFKTLPAAQIKILAPLIKFTFEEICQPLLKLNEEKKVLGHDGKINEDHMDTFKLFWKSFLNKEISFEQ KEIHPLIAQNLSFLPLPQLANKMLSEWLLESSLLKPNSKEKETLVTNSPVEFNILPFDIQQTLDLLLIKIIIHQALGFVM IHQINPLFDPFDFGLQVIHQWLKERIAELLTNDIDGYTSLGTALEKNLIKKSLIVFALIISIGYAEQSHSSRIKIAQTLK KIASHSTLHEPFFYANAALILIQGCEKEGNQLRIQQFIRYLAKETEINGEDMEKWRVLQYLLIEMLKKILTISNHPISSD VDPLHEENYFSMIIQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56865; Mature: 56734
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTINSNSLWAEQPEPLSIALSPPFSSINLQKASLVDKANSFEKTNEDFISSITPSDLPTL CCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCC IEPNSLTLQTTSLQKLLEKKVQGATEIVEEALKLLNPNLTEKTNNTLSKEVIEMKDSLQT CCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH FLKLMDTALTHFHPIRSKMDFLETYDSRALVNAILRLSEIRVRFSRENNSFQSLFKTLPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCH AQIKILAPLIKFTFEEICQPLLKLNEEKKVLGHDGKINEDHMDTFKLFWKSFLNKEISFE HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCH QKEIHPLIAQNLSFLPLPQLANKMLSEWLLESSLLKPNSKEKETLVTNSPVEFNILPFDI HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEECCCH QQTLDLLLIKIIIHQALGFVMIHQINPLFDPFDFGLQVIHQWLKERIAELLTNDIDGYTS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LGTALEKNLIKKSLIVFALIISIGYAEQSHSSRIKIAQTLKKIASHSTLHEPFFYANAAL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCHHE ILIQGCEKEGNQLRIQQFIRYLAKETEINGEDMEKWRVLQYLLIEMLKKILTISNHPISS EEEECCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC DVDPLHEENYFSMIIQG CCCCCCCCCHHEEEECC >Mature Secondary Structure TINSNSLWAEQPEPLSIALSPPFSSINLQKASLVDKANSFEKTNEDFISSITPSDLPTL CCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCC IEPNSLTLQTTSLQKLLEKKVQGATEIVEEALKLLNPNLTEKTNNTLSKEVIEMKDSLQT CCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH FLKLMDTALTHFHPIRSKMDFLETYDSRALVNAILRLSEIRVRFSRENNSFQSLFKTLPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCH AQIKILAPLIKFTFEEICQPLLKLNEEKKVLGHDGKINEDHMDTFKLFWKSFLNKEISFE HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCH QKEIHPLIAQNLSFLPLPQLANKMLSEWLLESSLLKPNSKEKETLVTNSPVEFNILPFDI HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEECCCH QQTLDLLLIKIIIHQALGFVMIHQINPLFDPFDFGLQVIHQWLKERIAELLTNDIDGYTS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LGTALEKNLIKKSLIVFALIISIGYAEQSHSSRIKIAQTLKKIASHSTLHEPFFYANAAL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCHHE ILIQGCEKEGNQLRIQQFIRYLAKETEINGEDMEKWRVLQYLLIEMLKKILTISNHPISS EEEECCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC DVDPLHEENYFSMIIQG CCCCCCCCCHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA