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The map label for this gene is tnpR [H]

Identifier: 46447103

GI number: 46447103

Start: 1745398

End: 1745955

Strand: Direct

Name: tnpR [H]

Synonym: pc1469

Alternate gene names: 46447103

Gene position: 1745398-1745955 (Clockwise)

Preceding gene: 46447102

Following gene: 46447104

Centisome position: 72.29

GC content: 44.09

Gene sequence:

>558_bases
ATGACTGGACAACGTATTGGGTACGTACGAGTTAGCACATACGACCAAAACCCTGACAGGCAATTGGATAATATTCAGGT
CACAAGAATATTTGTAGATAAAGCTTCAGGCAAGGATGTTAAACGTCCACAATTTGAAGCCTTGATGAGCTTTGTATGCG
CTGGAGACACTGTACTCGTCCATAGCATGGATAGATTGGCTCGTAATCTCGCTGATTTGCGTTCAATTGTCCAGACGTTG
ACTCAGCGCGGCGTGTGCATTGAATTTGTAAAAGAAAGCCTAAAATTTTCAGGTGAAGATTCTCCTATGGCCATCCTTAT
GCTGTCAGTCATGGGAGCGTTTGCCGAGTTTGAACGTTCTTTAATTCGTGAGCGTCAACGCGAGGGGATTGCTCTAGCCA
AGCAGCGTGGTGCCTATTGCGGGCGCAAGCGATCTTTATCGGATGCTGATATTCTCTCATTACGACAACGCATTCAAAAT
GGTGAAAAGAAATCAAAAGTTGCCAGAGAATTTGGCATTAGCCGTGAAACCCTTTATCAATATCTTCGTTCGGTATAA

Upstream 100 bases:

>100_bases
AAGAGAAACCAAAAACACGTCAGAATAGAGTTACTTCCTTAATTAATTAACACATTACAAAAAGGTTATAGACTCAAAAC
CGACACTTTAAGGAGATTTT

Downstream 100 bases:

>100_bases
ATATGTCTCGACGCACAATCCTATCCTACCCTTCCATACAAAGGTTATAAACATTGAAGTTCGTGATGCAACCTATGTAC
TTGGCGGTCTGCTATATCAC

Product: resolvase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MTGQRIGYVRVSTYDQNPDRQLDNIQVTRIFVDKASGKDVKRPQFEALMSFVCAGDTVLVHSMDRLARNLADLRSIVQTL
TQRGVCIEFVKESLKFSGEDSPMAILMLSVMGAFAEFERSLIRERQREGIALAKQRGAYCGRKRSLSDADILSLRQRIQN
GEKKSKVAREFGISRETLYQYLRSV

Sequences:

>Translated_185_residues
MTGQRIGYVRVSTYDQNPDRQLDNIQVTRIFVDKASGKDVKRPQFEALMSFVCAGDTVLVHSMDRLARNLADLRSIVQTL
TQRGVCIEFVKESLKFSGEDSPMAILMLSVMGAFAEFERSLIRERQREGIALAKQRGAYCGRKRSLSDADILSLRQRIQN
GEKKSKVAREFGISRETLYQYLRSV
>Mature_184_residues
TGQRIGYVRVSTYDQNPDRQLDNIQVTRIFVDKASGKDVKRPQFEALMSFVCAGDTVLVHSMDRLARNLADLRSIVQTLT
QRGVCIEFVKESLKFSGEDSPMAILMLSVMGAFAEFERSLIRERQREGIALAKQRGAYCGRKRSLSDADILSLRQRIQNG
EKKSKVAREFGISRETLYQYLRSV

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=178, Percent_Identity=37.6404494382022, Blast_Score=107, Evalue=3e-25,
Organism=Escherichia coli, GI1787827, Length=186, Percent_Identity=34.4086021505376, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787638, Length=183, Percent_Identity=34.4262295081967, Blast_Score=90, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 21045; Mature: 20913

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS00397 RECOMBINASES_1 ; PS00398 RECOMBINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGQRIGYVRVSTYDQNPDRQLDNIQVTRIFVDKASGKDVKRPQFEALMSFVCAGDTVLV
CCCCEEEEEEEEECCCCCCCHHCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHH
HSMDRLARNLADLRSIVQTLTQRGVCIEFVKESLKFSGEDSPMAILMLSVMGAFAEFERS
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LIRERQREGIALAKQRGAYCGRKRSLSDADILSLRQRIQNGEKKSKVAREFGISRETLYQ
HHHHHHHCCHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHH
YLRSV
HHHCC
>Mature Secondary Structure 
TGQRIGYVRVSTYDQNPDRQLDNIQVTRIFVDKASGKDVKRPQFEALMSFVCAGDTVLV
CCCEEEEEEEEECCCCCCCHHCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHH
HSMDRLARNLADLRSIVQTLTQRGVCIEFVKESLKFSGEDSPMAILMLSVMGAFAEFERS
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LIRERQREGIALAKQRGAYCGRKRSLSDADILSLRQRIQNGEKKSKVAREFGISRETLYQ
HHHHHHHCCHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHH
YLRSV
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2992807; 6312271; 3029727 [H]