| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46445975
Identifier: 46445975
GI number: 46445975
Start: 464614
End: 465414
Strand: Direct
Name: 46445975
Synonym: pc0341
Alternate gene names: NA
Gene position: 464614-465414 (Clockwise)
Preceding gene: 46445974
Following gene: 46445979
Centisome position: 19.24
GC content: 34.71
Gene sequence:
>801_bases ATGGCATATATGGATTGTCTCGCTTATTGCACAGCATCTTCCTATCAAATTAAACCCTTATTTGAAAGTTTAAAACACCA AGGAGCTACTCTTTATCGTGATGTAGTTCATCTTCCCATACCAGGAATTTCGATCGGGGATATATTTTATTTTTCTTATG GGGCTACTGTTTGTTGGGGGGTAACTCCAGATCAATGTCAACAATTTTTAGATCAAGCTAAAGCTTATGAAGAGCAGCCA TTAATTCCGGAGGAAATGGATATTGATGAATTTACTTTTACATTTGGAGACGTTCCAAAAATTATTGAAGATGAAATTAT TCTTCCTAATCGAGATGTTTTAAATCGCTTGGCCATTTCTCACGGATTAGCCCAATCTGTTAAGTTAGGGACTTTCGAGC ATGCAATTCGTCGCACATTTCAATTCACTAAGCGAATTCCTCAAGATTTGGCGAAGCAGGGAAAAATTCCTCTTTCAAGA AAAGAAATTAGAAAGAAGATGGGGGCATTATTTATAGAGCGTAACTCCATCAACTTACATCTAGATATTTTGGATACACC AGAATTTTTTTGGGAATATTCTGAGTTAGAACCGCTTTACGCAATGACAAATAATTATCTAGATATTGATACAAGAGTGG AAGTCTTAAATCAAAGATTAGATGTCATGCATGAATTGTTTGAAATGCTCGGAAACGAACTTAATCATCAGCATTCTAGC CGATTAGAATGGACAATTATTTGTTTAATTGTGATTGAAGTTTTTCTATCTATATGGCGAGATGTATTTCATTTTATTTA G
Upstream 100 bases:
>100_bases TTATTCATTCAAAGCAATTAGTCTTTGGTACTGCATCATTAAGATGTTTATCGATCAATTATGAAAGCTTTTGCTAAATG GCATAAAATATAAATAACTA
Downstream 100 bases:
>100_bases GGCATTTTCGCAGAAAAAGTGAGAAAAATACGACTATAAAAATTAATTAATGAAGAGAGGCGATCCTTAATTCGTCAAAT ACTCCTCGAACGGGTAACAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 266; Mature: 265
Protein sequence:
>266_residues MAYMDCLAYCTASSYQIKPLFESLKHQGATLYRDVVHLPIPGISIGDIFYFSYGATVCWGVTPDQCQQFLDQAKAYEEQP LIPEEMDIDEFTFTFGDVPKIIEDEIILPNRDVLNRLAISHGLAQSVKLGTFEHAIRRTFQFTKRIPQDLAKQGKIPLSR KEIRKKMGALFIERNSINLHLDILDTPEFFWEYSELEPLYAMTNNYLDIDTRVEVLNQRLDVMHELFEMLGNELNHQHSS RLEWTIICLIVIEVFLSIWRDVFHFI
Sequences:
>Translated_266_residues MAYMDCLAYCTASSYQIKPLFESLKHQGATLYRDVVHLPIPGISIGDIFYFSYGATVCWGVTPDQCQQFLDQAKAYEEQP LIPEEMDIDEFTFTFGDVPKIIEDEIILPNRDVLNRLAISHGLAQSVKLGTFEHAIRRTFQFTKRIPQDLAKQGKIPLSR KEIRKKMGALFIERNSINLHLDILDTPEFFWEYSELEPLYAMTNNYLDIDTRVEVLNQRLDVMHELFEMLGNELNHQHSS RLEWTIICLIVIEVFLSIWRDVFHFI >Mature_265_residues AYMDCLAYCTASSYQIKPLFESLKHQGATLYRDVVHLPIPGISIGDIFYFSYGATVCWGVTPDQCQQFLDQAKAYEEQPL IPEEMDIDEFTFTFGDVPKIIEDEIILPNRDVLNRLAISHGLAQSVKLGTFEHAIRRTFQFTKRIPQDLAKQGKIPLSRK EIRKKMGALFIERNSINLHLDILDTPEFFWEYSELEPLYAMTNNYLDIDTRVEVLNQRLDVMHELFEMLGNELNHQHSSR LEWTIICLIVIEVFLSIWRDVFHFI
Specific function: Unknown
COG id: COG1723
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI157388927, Length=280, Percent_Identity=32.5, Blast_Score=135, Evalue=3e-32, Organism=Caenorhabditis elegans, GI71996861, Length=240, Percent_Identity=35, Blast_Score=107, Evalue=9e-24, Organism=Saccharomyces cerevisiae, GI6320203, Length=289, Percent_Identity=37.7162629757785, Blast_Score=181, Evalue=8e-47, Organism=Saccharomyces cerevisiae, GI6321163, Length=222, Percent_Identity=34.6846846846847, Blast_Score=122, Evalue=6e-29, Organism=Saccharomyces cerevisiae, GI6320488, Length=292, Percent_Identity=26.7123287671233, Blast_Score=100, Evalue=4e-22, Organism=Drosophila melanogaster, GI18859701, Length=306, Percent_Identity=26.797385620915, Blast_Score=119, Evalue=2e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31042; Mature: 30911
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYMDCLAYCTASSYQIKPLFESLKHQGATLYRDVVHLPIPGISIGDIFYFSYGATVCWG CHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEC VTPDQCQQFLDQAKAYEEQPLIPEEMDIDEFTFTFGDVPKIIEDEIILPNRDVLNRLAIS CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHEECCCCCCHHHCCCCCCCCHHHHHHHHHH HGLAQSVKLGTFEHAIRRTFQFTKRIPQDLAKQGKIPLSRKEIRKKMGALFIERNSINLH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEEECCCEEE LDILDTPEFFWEYSELEPLYAMTNNYLDIDTRVEVLNQRLDVMHELFEMLGNELNHQHSS EEEECCHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC RLEWTIICLIVIEVFLSIWRDVFHFI CHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure AYMDCLAYCTASSYQIKPLFESLKHQGATLYRDVVHLPIPGISIGDIFYFSYGATVCWG HHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEC VTPDQCQQFLDQAKAYEEQPLIPEEMDIDEFTFTFGDVPKIIEDEIILPNRDVLNRLAIS CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHEECCCCCCHHHCCCCCCCCHHHHHHHHHH HGLAQSVKLGTFEHAIRRTFQFTKRIPQDLAKQGKIPLSRKEIRKKMGALFIERNSINLH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEEECCCEEE LDILDTPEFFWEYSELEPLYAMTNNYLDIDTRVEVLNQRLDVMHELFEMLGNELNHQHSS EEEECCHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC RLEWTIICLIVIEVFLSIWRDVFHFI CHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA