| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is ppaA
Identifier: 46445969
GI number: 46445969
Start: 456154
End: 458082
Strand: Reverse
Name: ppaA
Synonym: pc0335
Alternate gene names: NA
Gene position: 458082-456154 (Counterclockwise)
Preceding gene: 46445970
Following gene: 46445968
Centisome position: 18.97
GC content: 36.5
Gene sequence:
>1929_bases ATGTATATTCATAATCCAAATTTTCATCAACCTACTCTCAATGCCAATGCAGACATTCACTTTTACTATCCATCAAACGA TTGTTTAAAATTTTCTAAACGAATAAATTTATTATGCAAAACAATTTTTCAGTCCTTCCTGAACCTATTCTTTAACTATA TCAATAGAGATCAGCTTCAATCTCAATGGAGAGAGATCTTTTGGGGGCGAAAAGAGATTGCCACAACTCGTCCAGAATCT AGTGTATCTTTATCAAGCTCGACTCAAACTCCAGTTTTTGTCCTCCCTTCTTCAGAAAAGGCTCGCACTCAGGAAACTAT TGATAATTCTAAGGACGAAAACAAACCCTTAGTAAATTCTTTAGTTGCCATAGAAGAAATTGAGGCACCCACAATTCAAC CTTCCAATCCTTCGCCTTTTTCCCAAGAGAAATTTAAACTAAGCTTTCAGGATGGAACTTCTCTAATTATCCATATTTCT CAACTATCTTTGTTAAGGGAAAAATCACCCTATTTTAACTGTCTTTGGTCGGGAAATTTTCAAGAAACTCTTCGAGAATC TCTCGCTTTGACGCAAAAAGAGTTTACTAAACTGCTCAATTGCCTGGATGACGATTTTAAAGTTCCTTTGAAAAAGATCT GTTCTTTCATTCAACTGACCAATTATTATCAACTGACAGAAGTTGTGAAAAATTTAGAAAAACAGCTGCTTGATGCATAC AAATCAGATAAATTTGAGCTATTTAACTTCCATGAAGACAACCTAATAGAATTAAAAAAACTTTTAAATTTTGCGCAACA ATATCAATTAAATACTTTAAAAAATTACTTAGAGCTCACAGTTGTGAGTGCATTATTAAACCAGACTTCTCATTTAACAG AATTTGAAAAAATTTTAAACCACTTTTCAAATGAGATAGAAGCACTTAATTTTTCAAAGAATGCTCATTTGACTGATGCT CAACTCTTAACGTTAAAAAATTGTAAAAATTTAAAAGTGCTTCAACTTCAAGCATGCCACAATTTTACCGATGCTGGATT AGCACACTTGACTCCCTTAATGGCTTTACAGCATTTAAACTTGAGCTATTGTAAAAATCTCACTGACGCTGGATTAGCAC ATTTAGCTCCCTTAGTGGTTTTACAACATTTAAATTTATCTAGTTGCCATAATCTCACGGATGCAGGCTTAGCGCATTTG ACACCTTTAGTGGCTTTAACGCATTTAAATCTGAGTTGGTGCAATAAACTCACCGATGCAGGATTAGCACATTTAACTCC CTTAGTGGCTTTAACGCATTTAGATTTGCGTGAATGCGATAAGCTTACTAATAGAGGATTAGCGCATTTGGCGCTCTTAT TGACTTTACAATATTTAGATCTGAACTATTGTAGAAATCTTACTGACGCTGGATTAGCGCACTTGTCATCCTTAGTTGCT TTACAGCATTTAAAGCTATGTTGTTGCGTTAGTCTCACTGATGCTGGATTAGCGCATTTGGCTCCCTTAGTGGCTTTAAC GCATTTGGATCTGAGTTGGTGCTTTAATATCACTGACGCTGGATTAGCGCATTTGACTCCCTTAGTGACTTTACAGCATT TAGGTCTGAGCGGGTGCCGTAGACTCACTGATGTGGGATTAGCACATTTGACTCGCTTAGTGGCTTTACAGCATTTAGGT TTGAATAGATGCGATAATCTCACTGATGCTGGATTAGCGCATTTGACTCCCTTAATAAATTTACAGCATTTAGATCTGAG TGAGTGTCGTAAACTCACTAACGCTGGGTTAGCGCATTTGACACCTTTGGTGGCTTTACAGCGTTTAGATCTGCGTTGCT GCAATAAGCTCACTGGCGCTAGATTAGCGCATTTTAAATTCCTAGTAGCTAAACCACATTTGGATCTGCGTTGGTACAAA AACTCTTAA
Upstream 100 bases:
>100_bases ATCGAGCAATTTTCATTTAAATCTAATTGCCTATTTTAATTTCACTAATATTGATTGTATTATATAGCTAAAAATTATTT AGCTAATTTGGGGGATAATT
Downstream 100 bases:
>100_bases AATGCTAAATACAGAAATATTATTCGCTTTTCTAAAGCAAATAAAATTACAGATTTCCTAGTGATGTCTAAAGAATAAGG TTTCCATTCTTAGCCAGTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 642; Mature: 642
Protein sequence:
>642_residues MYIHNPNFHQPTLNANADIHFYYPSNDCLKFSKRINLLCKTIFQSFLNLFFNYINRDQLQSQWREIFWGRKEIATTRPES SVSLSSSTQTPVFVLPSSEKARTQETIDNSKDENKPLVNSLVAIEEIEAPTIQPSNPSPFSQEKFKLSFQDGTSLIIHIS QLSLLREKSPYFNCLWSGNFQETLRESLALTQKEFTKLLNCLDDDFKVPLKKICSFIQLTNYYQLTEVVKNLEKQLLDAY KSDKFELFNFHEDNLIELKKLLNFAQQYQLNTLKNYLELTVVSALLNQTSHLTEFEKILNHFSNEIEALNFSKNAHLTDA QLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHL TPLVALTHLNLSWCNKLTDAGLAHLTPLVALTHLDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLAHLSSLVA LQHLKLCCCVSLTDAGLAHLAPLVALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTRLVALQHLG LNRCDNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDLRCCNKLTGARLAHFKFLVAKPHLDLRWYK NS
Sequences:
>Translated_642_residues MYIHNPNFHQPTLNANADIHFYYPSNDCLKFSKRINLLCKTIFQSFLNLFFNYINRDQLQSQWREIFWGRKEIATTRPES SVSLSSSTQTPVFVLPSSEKARTQETIDNSKDENKPLVNSLVAIEEIEAPTIQPSNPSPFSQEKFKLSFQDGTSLIIHIS QLSLLREKSPYFNCLWSGNFQETLRESLALTQKEFTKLLNCLDDDFKVPLKKICSFIQLTNYYQLTEVVKNLEKQLLDAY KSDKFELFNFHEDNLIELKKLLNFAQQYQLNTLKNYLELTVVSALLNQTSHLTEFEKILNHFSNEIEALNFSKNAHLTDA QLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHL TPLVALTHLNLSWCNKLTDAGLAHLTPLVALTHLDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLAHLSSLVA LQHLKLCCCVSLTDAGLAHLAPLVALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTRLVALQHLG LNRCDNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDLRCCNKLTGARLAHFKFLVAKPHLDLRWYK NS >Mature_642_residues MYIHNPNFHQPTLNANADIHFYYPSNDCLKFSKRINLLCKTIFQSFLNLFFNYINRDQLQSQWREIFWGRKEIATTRPES SVSLSSSTQTPVFVLPSSEKARTQETIDNSKDENKPLVNSLVAIEEIEAPTIQPSNPSPFSQEKFKLSFQDGTSLIIHIS QLSLLREKSPYFNCLWSGNFQETLRESLALTQKEFTKLLNCLDDDFKVPLKKICSFIQLTNYYQLTEVVKNLEKQLLDAY KSDKFELFNFHEDNLIELKKLLNFAQQYQLNTLKNYLELTVVSALLNQTSHLTEFEKILNHFSNEIEALNFSKNAHLTDA QLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHL TPLVALTHLNLSWCNKLTDAGLAHLTPLVALTHLDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLAHLSSLVA LQHLKLCCCVSLTDAGLAHLAPLVALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTRLVALQHLG LNRCDNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDLRCCNKLTGARLAHFKFLVAKPHLDLRWYK NS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI22748931, Length=305, Percent_Identity=35.4098360655738, Blast_Score=148, Evalue=2e-35, Organism=Homo sapiens, GI284447308, Length=410, Percent_Identity=29.5121951219512, Blast_Score=114, Evalue=2e-25, Organism=Homo sapiens, GI27734755, Length=405, Percent_Identity=29.6296296296296, Blast_Score=111, Evalue=2e-24, Organism=Homo sapiens, GI161333852, Length=320, Percent_Identity=28.75, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI6912466, Length=285, Percent_Identity=30.5263157894737, Blast_Score=100, Evalue=6e-21, Organism=Homo sapiens, GI296531375, Length=400, Percent_Identity=29, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI289666746, Length=264, Percent_Identity=36.3636363636364, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI161333854, Length=411, Percent_Identity=25.0608272506083, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI284447314, Length=240, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=8e-17, Organism=Caenorhabditis elegans, GI25151694, Length=320, Percent_Identity=29.6875, Blast_Score=102, Evalue=6e-22, Organism=Caenorhabditis elegans, GI25151696, Length=320, Percent_Identity=29.6875, Blast_Score=102, Evalue=8e-22, Organism=Saccharomyces cerevisiae, GI6322549, Length=350, Percent_Identity=27.4285714285714, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI17647819, Length=298, Percent_Identity=34.8993288590604, Blast_Score=136, Evalue=5e-32, Organism=Drosophila melanogaster, GI24662818, Length=258, Percent_Identity=37.2093023255814, Blast_Score=106, Evalue=4e-23, Organism=Drosophila melanogaster, GI24652783, Length=308, Percent_Identity=29.8701298701299, Blast_Score=94, Evalue=4e-19, Organism=Drosophila melanogaster, GI161076545, Length=308, Percent_Identity=29.8701298701299, Blast_Score=94, Evalue=4e-19, Organism=Drosophila melanogaster, GI161076549, Length=308, Percent_Identity=29.8701298701299, Blast_Score=93, Evalue=6e-19, Organism=Drosophila melanogaster, GI161076547, Length=308, Percent_Identity=29.8701298701299, Blast_Score=93, Evalue=7e-19, Organism=Drosophila melanogaster, GI21357913, Length=280, Percent_Identity=31.7857142857143, Blast_Score=90, Evalue=4e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72459; Mature: 72459
Theoretical pI: Translated: 7.59; Mature: 7.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYIHNPNFHQPTLNANADIHFYYPSNDCLKFSKRINLLCKTIFQSFLNLFFNYINRDQLQ CCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH SQWREIFWGRKEIATTRPESSVSLSSSTQTPVFVLPSSEKARTQETIDNSKDENKPLVNS HHHHHHHCCCHHHHCCCCCCCCEECCCCCCCEEEECCCCHHHHHHHHCCCCCCCCHHHHH LVAIEEIEAPTIQPSNPSPFSQEKFKLSFQDGTSLIIHISQLSLLREKSPYFNCLWSGNF HHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEHHHHHHHHHCCCCEEEEECCCH QETLRESLALTQKEFTKLLNCLDDDFKVPLKKICSFIQLTNYYQLTEVVKNLEKQLLDAY HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSDKFELFNFHEDNLIELKKLLNFAQQYQLNTLKNYLELTVVSALLNQTSHLTEFEKILN CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HFSNEIEALNFSKNAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLN HHHHHHHEECCCCCCCCCHHHHHHHCCCCCCEEEEEHHHCCCCCCCHHHHHHHHHHHHCC LSYCKNLTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSWCNKLTDA HHHHCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHC GLAHLTPLVALTHLDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLAHLSSLVA CHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LQHLKLCCCVSLTDAGLAHLAPLVALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSGCR HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHCCHHHHH RLTDVGLAHLTRLVALQHLGLNRCDNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHL HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCHHHH TPLVALQRLDLRCCNKLTGARLAHFKFLVAKPHLDLRWYKNS HHHHHHHHHHHHHHHHHHCCHHHHHEEEEECCCCEEEEECCC >Mature Secondary Structure MYIHNPNFHQPTLNANADIHFYYPSNDCLKFSKRINLLCKTIFQSFLNLFFNYINRDQLQ CCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH SQWREIFWGRKEIATTRPESSVSLSSSTQTPVFVLPSSEKARTQETIDNSKDENKPLVNS HHHHHHHCCCHHHHCCCCCCCCEECCCCCCCEEEECCCCHHHHHHHHCCCCCCCCHHHHH LVAIEEIEAPTIQPSNPSPFSQEKFKLSFQDGTSLIIHISQLSLLREKSPYFNCLWSGNF HHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEHHHHHHHHHCCCCEEEEECCCH QETLRESLALTQKEFTKLLNCLDDDFKVPLKKICSFIQLTNYYQLTEVVKNLEKQLLDAY HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSDKFELFNFHEDNLIELKKLLNFAQQYQLNTLKNYLELTVVSALLNQTSHLTEFEKILN CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HFSNEIEALNFSKNAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLN HHHHHHHEECCCCCCCCCHHHHHHHCCCCCCEEEEEHHHCCCCCCCHHHHHHHHHHHHCC LSYCKNLTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSWCNKLTDA HHHHCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHC GLAHLTPLVALTHLDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLAHLSSLVA CHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LQHLKLCCCVSLTDAGLAHLAPLVALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSGCR HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHCCHHHHH RLTDVGLAHLTRLVALQHLGLNRCDNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHL HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCHHHH TPLVALQRLDLRCCNKLTGARLAHFKFLVAKPHLDLRWYKNS HHHHHHHHHHHHHHHHHHCCHHHHHEEEEECCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA