| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is ppa
Identifier: 46445970
GI number: 46445970
Start: 458803
End: 460611
Strand: Reverse
Name: ppa
Synonym: pc0336
Alternate gene names: NA
Gene position: 460611-458803 (Counterclockwise)
Preceding gene: 46445971
Following gene: 46445969
Centisome position: 19.08
GC content: 37.65
Gene sequence:
>1809_bases ATGCATATTTATAATACAAGATTTAATCCTAGTAATTTCATTGCCAATACGAATATTCATACTTACTATCGATCGAACAA TCGTTTAAAATTTTCTGAACGAATTAGTTTATTATGCAAAAAAATTTTTCAGTCCTCCCTGCACCCATTCTTTACCTATA TCAATAGAGATCAATTTCAGTCTCAATGGAGAGAGATTTTTTGGGGGCGAAAGGAGATTGTTATTTCTAAAAGAACTCGC ACTCAGGAAACTTTTGATAATCCTAAGGATGAAAACAAACTCTTAGTAACTTCTTTAGCTGCCATAGAAGAAATTGGGAC ATCCACAATTCAACCTTCCAATCCTCTGCCTTTCCCCCAAGAAGAATTTAAACTGAGCTTTCAGGATGAAACATCTCTAA TCATCCCTAGTTCCCAACTATCTTTGTTAATGGAAAAATCGCCCTATTTTAAGAGTCTCTGGTCGGGAAATTTTCAAGAA ACTCTTCGAGATCCTCTTACTTTGACACAAAAAGAGTTTATTCATCTGCTTAACTGCCTAATGGATGCTAATTTTAAAGT TTCTGAGGAAGATATCCCTTCTTTCATTCAACTAGCCGATTATTATCAACTGACGGAAGTTGTGAAGAATTTAGGGGAGC AGTTGCTTGACATATATAAATCCAAGAAATTTGAGCTATTTAATTCTAGCGAAGATAGCCTAGTGGAATTAAAAGAAGTT TTAAATTTTGCGCGGCAATATCAATTAAACACTTTAAAAAATTATTTAGAACTCACAGTTGTGAGTTCATTATTAAACCA GACTTCCCAATTAACGGAATTTGAAAAAATTTTAAAGCATTTCTCAAATGAGATAGAAAGACTCGATTTTTTAGAGAATG ATTATTTGACTGACACCCATCTCTTAGTTTTAAAAAATTGTAAAAATTTAAAAGAACTTTATCTTCAAAGATGCCACAAT CTCACGGATGCTGGATTAGCACATTTAGCCCCCTTACTGGCTTTGCAACATTTAGATTTAAGTGAATGCAATAATCTTAC TGATGCTGGATTAGCGCATTTAACTCCCTTAATGGCTTTACAGCATTTAAACTTGAGCTATTGTAAGAATCTCACTGACG CTGGATTAGCACATTTGACACCTTTAGTGGCTTTGCAGTATTTAGATCTAAGTGGATGCGATAATCTCACGGATGCTGGA TTAGCGCATTTAACTCCCTTAATGGCTTTGCAGCATTTAGGTCTGAGTGCATGCGATAAGCTCACTGACGCTGGCTTAGC GCATTTGACACCCTTAGTAGCTTTACAGTATTTAAGTTTGAATGGATGCGATAAGCTTACTGACGTTGGATTAGCGCATT TGACACCTTTAGTGGCTTTAACGCATTTAAATCTGAGTTGGTGCGATAAGCTCACCGATGCAGGATTAGCACATTTAACT CCCTTGGTGGCTTTACAGCATTTGAACCTGCGTTGGTGCCGTAAGCTCACGGACGCCGGATTAGCGCATTTGACTCCCTT AGTGGCTCTGCAGCATTTAGATCTAAATAGATGCCCTAAGCTCACGGACGCTGGATTAGCGCATTTGACTTCCTTAGTAA ATTTACGGCATTTAAACTTGAGCTATTGTAGAAAGCTTACTGACGTTGGATTAGCACATTTAACTCCCTTGGTGGCTTTA CAGCATTTGAATCTAAGTTGTTGCCGTAAGCTCACGGACGCCGGATTAGCGCATTTAGCCTCCTTGCTGGCTTTACAGCA TTTAGATCTAAGTGGATGCGATAAGCTCACTGATGCTGTGCTGGAATAA
Upstream 100 bases:
>100_bases AGAGCATTTCTCTTTTTAACTTTAATTACATATTTAATTTTACTAAAATTGATTGTATATAATATAATTAAAAACTATTT AGCTAATTTAAAGGATAATT
Downstream 100 bases:
>100_bases CGCATTTGACTCCCTTAGTGGCTTTACAACATTTGAATGAGATTATGCCCTAACCACACGTGCTGGAATAACGCATTTTA CAACTTTGGCTTTAAAGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 602; Mature: 602
Protein sequence:
>602_residues MHIYNTRFNPSNFIANTNIHTYYRSNNRLKFSERISLLCKKIFQSSLHPFFTYINRDQFQSQWREIFWGRKEIVISKRTR TQETFDNPKDENKLLVTSLAAIEEIGTSTIQPSNPLPFPQEEFKLSFQDETSLIIPSSQLSLLMEKSPYFKSLWSGNFQE TLRDPLTLTQKEFIHLLNCLMDANFKVSEEDIPSFIQLADYYQLTEVVKNLGEQLLDIYKSKKFELFNSSEDSLVELKEV LNFARQYQLNTLKNYLELTVVSSLLNQTSQLTEFEKILKHFSNEIERLDFLENDYLTDTHLLVLKNCKNLKELYLQRCHN LTDAGLAHLAPLLALQHLDLSECNNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAG LAHLTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHLNLSWCDKLTDAGLAHLT PLVALQHLNLRWCRKLTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNLSYCRKLTDVGLAHLTPLVAL QHLNLSCCRKLTDAGLAHLASLLALQHLDLSGCDKLTDAVLE
Sequences:
>Translated_602_residues MHIYNTRFNPSNFIANTNIHTYYRSNNRLKFSERISLLCKKIFQSSLHPFFTYINRDQFQSQWREIFWGRKEIVISKRTR TQETFDNPKDENKLLVTSLAAIEEIGTSTIQPSNPLPFPQEEFKLSFQDETSLIIPSSQLSLLMEKSPYFKSLWSGNFQE TLRDPLTLTQKEFIHLLNCLMDANFKVSEEDIPSFIQLADYYQLTEVVKNLGEQLLDIYKSKKFELFNSSEDSLVELKEV LNFARQYQLNTLKNYLELTVVSSLLNQTSQLTEFEKILKHFSNEIERLDFLENDYLTDTHLLVLKNCKNLKELYLQRCHN LTDAGLAHLAPLLALQHLDLSECNNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAG LAHLTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHLNLSWCDKLTDAGLAHLT PLVALQHLNLRWCRKLTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNLSYCRKLTDVGLAHLTPLVAL QHLNLSCCRKLTDAGLAHLASLLALQHLDLSGCDKLTDAVLE >Mature_602_residues MHIYNTRFNPSNFIANTNIHTYYRSNNRLKFSERISLLCKKIFQSSLHPFFTYINRDQFQSQWREIFWGRKEIVISKRTR TQETFDNPKDENKLLVTSLAAIEEIGTSTIQPSNPLPFPQEEFKLSFQDETSLIIPSSQLSLLMEKSPYFKSLWSGNFQE TLRDPLTLTQKEFIHLLNCLMDANFKVSEEDIPSFIQLADYYQLTEVVKNLGEQLLDIYKSKKFELFNSSEDSLVELKEV LNFARQYQLNTLKNYLELTVVSSLLNQTSQLTEFEKILKHFSNEIERLDFLENDYLTDTHLLVLKNCKNLKELYLQRCHN LTDAGLAHLAPLLALQHLDLSECNNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAG LAHLTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHLNLSWCDKLTDAGLAHLT PLVALQHLNLRWCRKLTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNLSYCRKLTDVGLAHLTPLVAL QHLNLSCCRKLTDAGLAHLASLLALQHLDLSGCDKLTDAVLE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI22748931, Length=315, Percent_Identity=34.6031746031746, Blast_Score=150, Evalue=3e-36, Organism=Homo sapiens, GI161333852, Length=290, Percent_Identity=30.3448275862069, Blast_Score=116, Evalue=8e-26, Organism=Homo sapiens, GI284447308, Length=325, Percent_Identity=32, Blast_Score=115, Evalue=1e-25, Organism=Homo sapiens, GI6912466, Length=289, Percent_Identity=32.1799307958478, Blast_Score=115, Evalue=1e-25, Organism=Homo sapiens, GI161333854, Length=363, Percent_Identity=26.4462809917355, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI27734755, Length=401, Percent_Identity=28.6783042394015, Blast_Score=107, Evalue=4e-23, Organism=Homo sapiens, GI296531375, Length=368, Percent_Identity=29.6195652173913, Blast_Score=96, Evalue=7e-20, Organism=Homo sapiens, GI289666746, Length=262, Percent_Identity=35.8778625954198, Blast_Score=94, Evalue=3e-19, Organism=Homo sapiens, GI284447314, Length=251, Percent_Identity=31.8725099601594, Blast_Score=83, Evalue=8e-16, Organism=Caenorhabditis elegans, GI25151694, Length=353, Percent_Identity=29.1784702549575, Blast_Score=99, Evalue=5e-21, Organism=Caenorhabditis elegans, GI25151696, Length=353, Percent_Identity=29.1784702549575, Blast_Score=99, Evalue=5e-21, Organism=Saccharomyces cerevisiae, GI6322549, Length=363, Percent_Identity=27.5482093663912, Blast_Score=89, Evalue=1e-18, Organism=Drosophila melanogaster, GI17647819, Length=318, Percent_Identity=36.1635220125786, Blast_Score=147, Evalue=2e-35, Organism=Drosophila melanogaster, GI24662818, Length=260, Percent_Identity=36.5384615384615, Blast_Score=108, Evalue=9e-24, Organism=Drosophila melanogaster, GI21357913, Length=296, Percent_Identity=31.0810810810811, Blast_Score=98, Evalue=2e-20, Organism=Drosophila melanogaster, GI161076545, Length=374, Percent_Identity=29.144385026738, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI24652783, Length=374, Percent_Identity=29.144385026738, Blast_Score=94, Evalue=3e-19, Organism=Drosophila melanogaster, GI161076549, Length=374, Percent_Identity=29.144385026738, Blast_Score=94, Evalue=4e-19, Organism=Drosophila melanogaster, GI161076547, Length=374, Percent_Identity=29.144385026738, Blast_Score=93, Evalue=4e-19, Organism=Drosophila melanogaster, GI19921840, Length=343, Percent_Identity=28.2798833819242, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24646754, Length=299, Percent_Identity=31.1036789297659, Blast_Score=69, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68034; Mature: 68034
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHIYNTRFNPSNFIANTNIHTYYRSNNRLKFSERISLLCKKIFQSSLHPFFTYINRDQFQ CCCCCCCCCCCCCEECCCEEEEEECCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH SQWREIFWGRKEIVISKRTRTQETFDNPKDENKLLVTSLAAIEEIGTSTIQPSNPLPFPQ HHHHHHHCCCHHEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCH EEFKLSFQDETSLIIPSSQLSLLMEKSPYFKSLWSGNFQETLRDPLTLTQKEFIHLLNCL HHHEEEECCCCCEEECHHHHHHHHHCCCHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHH MDANFKVSEEDIPSFIQLADYYQLTEVVKNLGEQLLDIYKSKKFELFNSSEDSLVELKEV HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHH LNFARQYQLNTLKNYLELTVVSSLLNQTSQLTEFEKILKHFSNEIERLDFLENDYLTDTH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH LLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQHLDLSECNNLTDAGLAHLTPLMAL HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHH QHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAHLTPLMALQHLGLSACDK HHCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHCHHHHHHHHHHHHHCCHHHHHH LTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHLNLSWCDKLTDAGLAHLT HHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHH PLVALQHLNLRWCRKLTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNL HHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHCCH SYCRKLTDVGLAHLTPLVALQHLNLSCCRKLTDAGLAHLASLLALQHLDLSGCDKLTDAV HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH LE CC >Mature Secondary Structure MHIYNTRFNPSNFIANTNIHTYYRSNNRLKFSERISLLCKKIFQSSLHPFFTYINRDQFQ CCCCCCCCCCCCCEECCCEEEEEECCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH SQWREIFWGRKEIVISKRTRTQETFDNPKDENKLLVTSLAAIEEIGTSTIQPSNPLPFPQ HHHHHHHCCCHHEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCH EEFKLSFQDETSLIIPSSQLSLLMEKSPYFKSLWSGNFQETLRDPLTLTQKEFIHLLNCL HHHEEEECCCCCEEECHHHHHHHHHCCCHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHH MDANFKVSEEDIPSFIQLADYYQLTEVVKNLGEQLLDIYKSKKFELFNSSEDSLVELKEV HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHH LNFARQYQLNTLKNYLELTVVSSLLNQTSQLTEFEKILKHFSNEIERLDFLENDYLTDTH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH LLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQHLDLSECNNLTDAGLAHLTPLMAL HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHH QHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAHLTPLMALQHLGLSACDK HHCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHCHHHHHHHHHHHHHCCHHHHHH LTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHLNLSWCDKLTDAGLAHLT HHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHH PLVALQHLNLRWCRKLTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNL HHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHCCH SYCRKLTDVGLAHLTPLVALQHLNLSCCRKLTDAGLAHLASLLALQHLDLSGCDKLTDAV HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH LE CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA