| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is ppaA
Identifier: 46445968
GI number: 46445968
Start: 453695
End: 455545
Strand: Reverse
Name: ppaA
Synonym: pc0334
Alternate gene names: NA
Gene position: 455545-453695 (Counterclockwise)
Preceding gene: 46445969
Following gene: 46445967
Centisome position: 18.87
GC content: 37.22
Gene sequence:
>1851_bases ATGCATATTCATAATCCAAGTTTTAATCGGCAAACTCTCATTGCCAATGCAGATACTCACCTCTACTATCGATCGAATGA TCATTTAAGGTTTTCTGAACGAATAAATTTATTATGCAAAACAATTTTTCAGAACTTTCTGAACCTATTCTTTAACTATA TCAATAGAGATCAGCTTCAATCTCAATGGAGAGAGATCTTTTGGGGGCGAAAAGAGATTGCCACAACTCGTCCAGAATCT AGTGTATCTTTATCAAGCTCGACTCAAACTTCAGTTTTTGTCCTCCCTTCTTCAGAAAAGGCTCGCACTCAGGAAACTAT TGATAATTCTAAGGACGAAAACAAACCCTTAGTAAATTCTTTAGCTGGCATAGAAGAAATTGAGGCATCCACAATTCAAC CTTCTAATCCTTTGCCTTTTCCCCAAGAAGAATTTAAACTGAGCTTTCTGGATAAAACATCTCTAAACATCTCTAGCTCT CAACTATCTTTGTTAATGGAAAAATCGCTCTATTTTAAGAGCCTTTGGTCAGGAAATTTCAAAGAAACTCTTCGAGATCC TCTCACTTTGACACAAAAAGAGTTTATTCATCTGCTTAATTGCCTGTTAGATGCTAATTATAAAGTTCCTTTAAAAAAAA TTTGTTCTTTCATTCAATTAGCCGACTATTATCAACTGACAGAGGTTGTGAAGAATTTAGAACAACGGTTGCTTGACGCA TATAAATCCAAGAAATTTGAGCTATTTAACTCTAGCGAAGATAGCTTAGTGAAATTAAAAGAACTTTTAAATTTTGCGCA GCAATACCAATTAAACACTTTAAAAAATTATTTAGAACTCACAGTGGTAAGTTCATTATTAAACCAGGCTTCTCATTTAA CAGAATTTGAAAAAATTATAAATTACTTTGCAAATGCAATAGAAGGGCTCAATTTTTCAGAATATGCTTATCTAACAGAT ATTCATCTCTTAGCATTAAAAAGCTGGGAGCTTACTGACGCTAGATTAGCGCATTTGGCTCCCTTAGTAAATTTACGGCA TTTAAATCTGAGTGGGGACATGTCCAATCTCACGGATGCTGGATTAGCGCATTTGACACCCTTAGTCAATTTACAGCATC TGAATCTGCACTGGTGCGATAAGCTCACTGACGATGGATTGGCGCATTTGAGGTCCTTAGTAAATTTACAGCATCTGAAT CTGCACTGTTGCAATAAGCTCACTGACGCTGGATTGGCGCATTTGAGGCCCTTAGTCAATTTACAGCATTTAAATCTGAG CAAGTGCCCTAAGCTCACTGATGCTGGATTGGCGCATTTGACACCTTTAGTCAATTTACAGCATTTAGATCTAAGTTGGT GCCCACTGAATTTCACCGGCGCTGGATTAGCGTATTTGGCTCCCTTAATAGATCTACAGTATTTAAATTTATGTTGCTGC AATGAGCTCACTGACATTGGATTAATGCATTTGACACCCTTAGTCAATTTACAGCATTTAGATCTGAGTGGATGCGATAA TCTCACTGACGCTGGATTAATGCATTTGACATCCTTAGTAAATTTACAGCATCTGAATCTGCGTTGTTGCGATAATCTCA CTAAAACTGGATTAATGCATTTGACTTCCTTAGTAAATTTACGGCAGTTAGTTCTGAGTTGGTACTCGCCCGATCTCAAT GAAGCTGGATTAGCGCATTTAATTCCCCACTTTGAGGCTTCACAGCCTTGGGACGACCTTTATCATTACAGACATCTTCT TCAAGCTAAATTAGCATATACTAGCTTTTTACGTAGAGGACAGTGGGGTTTGCCTACATTGATAAGAAAACACTCGATGC CTCTGAATTAG
Upstream 100 bases:
>100_bases TCTCTTTTTAACTTTAATTACATATATAATTTCATTAATATTGCAATATTTTTTATATATAATATAATTAAAAATTATCC AAATAATTTGGAGGGTAATT
Downstream 100 bases:
>100_bases CGCATTTTAAATTCCTAGTAGATAAATCACATTTAGGTTTGTGTTGGCACAAAAACTCTTAATGATGCAGAATACAGAAG TATTATTCCCTCAGAAAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 616; Mature: 616
Protein sequence:
>616_residues MHIHNPSFNRQTLIANADTHLYYRSNDHLRFSERINLLCKTIFQNFLNLFFNYINRDQLQSQWREIFWGRKEIATTRPES SVSLSSSTQTSVFVLPSSEKARTQETIDNSKDENKPLVNSLAGIEEIEASTIQPSNPLPFPQEEFKLSFLDKTSLNISSS QLSLLMEKSLYFKSLWSGNFKETLRDPLTLTQKEFIHLLNCLLDANYKVPLKKICSFIQLADYYQLTEVVKNLEQRLLDA YKSKKFELFNSSEDSLVKLKELLNFAQQYQLNTLKNYLELTVVSSLLNQASHLTEFEKIINYFANAIEGLNFSEYAYLTD IHLLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLN LHCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCC NELTDIGLMHLTPLVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNLRCCDNLTKTGLMHLTSLVNLRQLVLSWYSPDLN EAGLAHLIPHFEASQPWDDLYHYRHLLQAKLAYTSFLRRGQWGLPTLIRKHSMPLN
Sequences:
>Translated_616_residues MHIHNPSFNRQTLIANADTHLYYRSNDHLRFSERINLLCKTIFQNFLNLFFNYINRDQLQSQWREIFWGRKEIATTRPES SVSLSSSTQTSVFVLPSSEKARTQETIDNSKDENKPLVNSLAGIEEIEASTIQPSNPLPFPQEEFKLSFLDKTSLNISSS QLSLLMEKSLYFKSLWSGNFKETLRDPLTLTQKEFIHLLNCLLDANYKVPLKKICSFIQLADYYQLTEVVKNLEQRLLDA YKSKKFELFNSSEDSLVKLKELLNFAQQYQLNTLKNYLELTVVSSLLNQASHLTEFEKIINYFANAIEGLNFSEYAYLTD IHLLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLN LHCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCC NELTDIGLMHLTPLVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNLRCCDNLTKTGLMHLTSLVNLRQLVLSWYSPDLN EAGLAHLIPHFEASQPWDDLYHYRHLLQAKLAYTSFLRRGQWGLPTLIRKHSMPLN >Mature_616_residues MHIHNPSFNRQTLIANADTHLYYRSNDHLRFSERINLLCKTIFQNFLNLFFNYINRDQLQSQWREIFWGRKEIATTRPES SVSLSSSTQTSVFVLPSSEKARTQETIDNSKDENKPLVNSLAGIEEIEASTIQPSNPLPFPQEEFKLSFLDKTSLNISSS QLSLLMEKSLYFKSLWSGNFKETLRDPLTLTQKEFIHLLNCLLDANYKVPLKKICSFIQLADYYQLTEVVKNLEQRLLDA YKSKKFELFNSSEDSLVKLKELLNFAQQYQLNTLKNYLELTVVSSLLNQASHLTEFEKIINYFANAIEGLNFSEYAYLTD IHLLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLN LHCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCC NELTDIGLMHLTPLVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNLRCCDNLTKTGLMHLTSLVNLRQLVLSWYSPDLN EAGLAHLIPHFEASQPWDDLYHYRHLLQAKLAYTSFLRRGQWGLPTLIRKHSMPLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI22748931, Length=209, Percent_Identity=35.4066985645933, Blast_Score=105, Evalue=2e-22, Organism=Homo sapiens, GI284447308, Length=348, Percent_Identity=29.0229885057471, Blast_Score=84, Evalue=4e-16, Organism=Homo sapiens, GI6912466, Length=209, Percent_Identity=32.0574162679426, Blast_Score=77, Evalue=4e-14, Organism=Homo sapiens, GI296531375, Length=330, Percent_Identity=28.7878787878788, Blast_Score=75, Evalue=3e-13, Organism=Homo sapiens, GI161333854, Length=264, Percent_Identity=28.4090909090909, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI284447314, Length=220, Percent_Identity=33.1818181818182, Blast_Score=71, Evalue=3e-12, Organism=Homo sapiens, GI161333852, Length=262, Percent_Identity=28.2442748091603, Blast_Score=71, Evalue=4e-12, Organism=Homo sapiens, GI289666746, Length=314, Percent_Identity=30.2547770700637, Blast_Score=70, Evalue=7e-12, Organism=Homo sapiens, GI27734755, Length=400, Percent_Identity=27, Blast_Score=67, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6322549, Length=211, Percent_Identity=31.7535545023697, Blast_Score=78, Evalue=4e-15, Organism=Drosophila melanogaster, GI17647819, Length=218, Percent_Identity=33.9449541284404, Blast_Score=97, Evalue=4e-20, Organism=Drosophila melanogaster, GI24662818, Length=184, Percent_Identity=37.5, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI21357913, Length=260, Percent_Identity=30.7692307692308, Blast_Score=66, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70397; Mature: 70397
Theoretical pI: Translated: 6.90; Mature: 6.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHIHNPSFNRQTLIANADTHLYYRSNDHLRFSERINLLCKTIFQNFLNLFFNYINRDQLQ CCCCCCCCCCCEEEEECCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH SQWREIFWGRKEIATTRPESSVSLSSSTQTSVFVLPSSEKARTQETIDNSKDENKPLVNS HHHHHHHCCCHHHHCCCCCCCCEECCCCCCEEEEECCCCHHHHHHHHCCCCCCCCHHHHH LAGIEEIEASTIQPSNPLPFPQEEFKLSFLDKTSLNISSSQLSLLMEKSLYFKSLWSGNF HHHHHHHHHCCCCCCCCCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCH KETLRDPLTLTQKEFIHLLNCLLDANYKVPLKKICSFIQLADYYQLTEVVKNLEQRLLDA HHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YKSKKFELFNSSEDSLVKLKELLNFAQQYQLNTLKNYLELTVVSSLLNQASHLTEFEKII HHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NYFANAIEGLNFSEYAYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDA HHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCHHHHHH GLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVN HHHHHHHHCCEEECCCHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH LQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCC HCCCCHHHCCCCHHCCHHHHHHHCCEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHHH NELTDIGLMHLTPLVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNLRCCDNLTKTGLMH HHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH LTSLVNLRQLVLSWYSPDLNEAGLAHLIPHFEASQPWDDLYHYRHLLQAKLAYTSFLRRG HHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC QWGLPTLIRKHSMPLN CCCCHHHHHHCCCCCC >Mature Secondary Structure MHIHNPSFNRQTLIANADTHLYYRSNDHLRFSERINLLCKTIFQNFLNLFFNYINRDQLQ CCCCCCCCCCCEEEEECCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH SQWREIFWGRKEIATTRPESSVSLSSSTQTSVFVLPSSEKARTQETIDNSKDENKPLVNS HHHHHHHCCCHHHHCCCCCCCCEECCCCCCEEEEECCCCHHHHHHHHCCCCCCCCHHHHH LAGIEEIEASTIQPSNPLPFPQEEFKLSFLDKTSLNISSSQLSLLMEKSLYFKSLWSGNF HHHHHHHHHCCCCCCCCCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCH KETLRDPLTLTQKEFIHLLNCLLDANYKVPLKKICSFIQLADYYQLTEVVKNLEQRLLDA HHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YKSKKFELFNSSEDSLVKLKELLNFAQQYQLNTLKNYLELTVVSSLLNQASHLTEFEKII HHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NYFANAIEGLNFSEYAYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDA HHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCHHHHHH GLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVN HHHHHHHHCCEEECCCHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH LQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCC HCCCCHHHCCCCHHCCHHHHHHHCCEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHHH NELTDIGLMHLTPLVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNLRCCDNLTKTGLMH HHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH LTSLVNLRQLVLSWYSPDLNEAGLAHLIPHFEASQPWDDLYHYRHLLQAKLAYTSFLRRG HHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC QWGLPTLIRKHSMPLN CCCCHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA