Click here to switch to the map view.

The map label for this gene is sodM [H]

Identifier: 46445904

GI number: 46445904

Start: 382103

End: 382729

Strand: Reverse

Name: sodM [H]

Synonym: pc0270

Alternate gene names: 46445904

Gene position: 382729-382103 (Counterclockwise)

Preceding gene: 46445905

Following gene: 46445903

Centisome position: 15.85

GC content: 35.41

Gene sequence:

>627_bases
ATGAATCAACAAAAATCACAAGCTTATAAACTTCCCGATCTTTCTTATGATTTTAATGCTTTAGAGCCTGTCATTAGTGC
AGAAATTATGTCTCTTCACTATACCAAACACCATCAAACTTATGTAACAAATTTAAATAAAGCTTTAGAACAGTATTTGG
AAGCCGAAGCCAATAATGATTTATCTACAATGATTGCTCTTCAATCAGTCATTAAATTTAATGGAGGTGGGCATGTCAAT
CATTCGATTTTTTGGACGAATCTTGCTCCAAAAAATAAAGCTGGAGGAATGGCACCAGAGGGAATTTTAGCTGATGCGAT
TAATAAAGAGTTTGGATCTTTACAAACCCTAATTGAACAATTAAGTGCGAAAGCAATCGCTATTCAAGGCTCTGGTTGGG
GTTGGCTCGGCTATGATAAAGCTAAAGATCGTTTAACTCTTGCCACTTGTGAAAACCAAGACCCCCTCTCTACAAAAGGT
CTCATTCCTTTACTCGGTATCGATGTTTGGGAGCATGCTTATTATTTACAATATAAAAATGTCCGGGCTGATTACGTAAA
AAATATTTGGAATATCATTAATTGGAAAAACGTAGCGGAAAGATACCAAGCTGCTAAAACTAAATAA

Upstream 100 bases:

>100_bases
TGAAATAAACAAGTGCAAATTTCTTATTATAAGATGGTTAATTATTCCTCTCCATTAGAAAACGTTAACAACTAGCTAAA
TGCTTTTATAAGGAGTCCAT

Downstream 100 bases:

>100_bases
TTTTTTTAATTTTTATTGCAGTTAAATTTCTAAAAACGCTCTCCATAAAACATTCGAAAATTAGCTGAATCATTGGCTAA
TTTTCGAATTCATATAGAAA

Product: superoxide dismutase (Mn) precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MNQQKSQAYKLPDLSYDFNALEPVISAEIMSLHYTKHHQTYVTNLNKALEQYLEAEANNDLSTMIALQSVIKFNGGGHVN
HSIFWTNLAPKNKAGGMAPEGILADAINKEFGSLQTLIEQLSAKAIAIQGSGWGWLGYDKAKDRLTLATCENQDPLSTKG
LIPLLGIDVWEHAYYLQYKNVRADYVKNIWNIINWKNVAERYQAAKTK

Sequences:

>Translated_208_residues
MNQQKSQAYKLPDLSYDFNALEPVISAEIMSLHYTKHHQTYVTNLNKALEQYLEAEANNDLSTMIALQSVIKFNGGGHVN
HSIFWTNLAPKNKAGGMAPEGILADAINKEFGSLQTLIEQLSAKAIAIQGSGWGWLGYDKAKDRLTLATCENQDPLSTKG
LIPLLGIDVWEHAYYLQYKNVRADYVKNIWNIINWKNVAERYQAAKTK
>Mature_208_residues
MNQQKSQAYKLPDLSYDFNALEPVISAEIMSLHYTKHHQTYVTNLNKALEQYLEAEANNDLSTMIALQSVIKFNGGGHVN
HSIFWTNLAPKNKAGGMAPEGILADAINKEFGSLQTLIEQLSAKAIAIQGSGWGWLGYDKAKDRLTLATCENQDPLSTKG
LIPLLGIDVWEHAYYLQYKNVRADYVKNIWNIINWKNVAERYQAAKTK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=201, Percent_Identity=61.1940298507463, Blast_Score=266, Evalue=1e-71,
Organism=Homo sapiens, GI67782305, Length=201, Percent_Identity=61.1940298507463, Blast_Score=266, Evalue=1e-71,
Organism=Homo sapiens, GI67782309, Length=201, Percent_Identity=48.7562189054726, Blast_Score=192, Evalue=1e-49,
Organism=Escherichia coli, GI1790342, Length=213, Percent_Identity=39.906103286385, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1787946, Length=198, Percent_Identity=40.9090909090909, Blast_Score=137, Evalue=4e-34,
Organism=Caenorhabditis elegans, GI17506561, Length=199, Percent_Identity=61.3065326633166, Blast_Score=245, Evalue=1e-65,
Organism=Caenorhabditis elegans, GI17569479, Length=198, Percent_Identity=60.1010101010101, Blast_Score=242, Evalue=1e-64,
Organism=Saccharomyces cerevisiae, GI6321796, Length=204, Percent_Identity=48.5294117647059, Blast_Score=201, Evalue=5e-53,
Organism=Drosophila melanogaster, GI17136812, Length=199, Percent_Identity=54.2713567839196, Blast_Score=228, Evalue=3e-60,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23388; Mature: 23388

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQQKSQAYKLPDLSYDFNALEPVISAEIMSLHYTKHHQTYVTNLNKALEQYLEAEANND
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LSTMIALQSVIKFNGGGHVNHSIFWTNLAPKNKAGGMAPEGILADAINKEFGSLQTLIEQ
HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LSAKAIAIQGSGWGWLGYDKAKDRLTLATCENQDPLSTKGLIPLLGIDVWEHAYYLQYKN
HCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHEEEEEECC
VRADYVKNIWNIINWKNVAERYQAAKTK
CHHHHHHHHHHHHCHHHHHHHHHHHCCC
>Mature Secondary Structure
MNQQKSQAYKLPDLSYDFNALEPVISAEIMSLHYTKHHQTYVTNLNKALEQYLEAEANND
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LSTMIALQSVIKFNGGGHVNHSIFWTNLAPKNKAGGMAPEGILADAINKEFGSLQTLIEQ
HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LSAKAIAIQGSGWGWLGYDKAKDRLTLATCENQDPLSTKGLIPLLGIDVWEHAYYLQYKN
HCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHEEEEEECC
VRADYVKNIWNIINWKNVAERYQAAKTK
CHHHHHHHHHHHHCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9784136 [H]