| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is dinG [H]
Identifier: 46445810
GI number: 46445810
Start: 264440
End: 266701
Strand: Reverse
Name: dinG [H]
Synonym: pc0176
Alternate gene names: 46445810
Gene position: 266701-264440 (Counterclockwise)
Preceding gene: 46445811
Following gene: 46445809
Centisome position: 11.05
GC content: 38.37
Gene sequence:
>2262_bases ATGTCTCATTCTCAATTACAAAGCCGAGGTCTTCAATCAGAGAAAATTCTTTCACTTCTTAAACCTGATGGATTACTTGC TAATAGCTTAAAAGGCTTTGAATTTCGTCCCCAGCAACAGCAGATGATGACAAATATTATCGAGGCGTACAATAATGATT CGATTGCTCTCATCGAAGCTGGAACAGGAATAGGTAAAAGTCTAGCTTACTTGATTCCGGCTTTAATTTGGGCAGCACGT TTCAATGAACGCACTGTCATCTCGACCAATACCATTACTCTTCAGGAGCAGCTTTTATCAAAAGACATTCCAAACCTTTT AGACGCACTTGATTTGAATTTGAAAGCGGTACTTGTTAAAGGAATGCATAATTATCTTTGTATTCGTAAACTAGAAGATG TTCAGATGGAAATGAGCATTGTCTCTTCAGAAGAAGCCCAAGAAATTGAGAAAATTGAGGCTTGGCGCCAACAAACAGTT GATGGATCGCGCTCTTCACTTTCTTTCGCTCCGACTCATTCTGTTTGGGAGAAAGTTGGAGCAGAAAATGAAGCGTGCTC TCATCATGAATGTCCTCATTACCAGCAATGTTTCTTTTTTAAAGCTAGACGCCAAGCACAAGATGCGCACATCTTAATTG TGAATCACCACCTCTTATTTGCTGATCTTATGCGCCGAGCAGACACTGCCAATTACAGCGAAACAAGCATTCTTCCCACC TATCGCAGAATTATTTTAGATGAAGCTCATCATGTTGAAGATATTGCTACAGAATATTTTGCTTCACATTTACATCGTAT TGAGTTGATGCGCACAATGGGTCGCTTAGGTTCTGAAAGGCATAGTCAACAACCAGGTAAACTTCCTATTTTAAAAGAGA AACTGCAACTTTTATATAATAAAACTCCACCGCGAGAAATTAGTCAAATCGTGATGCGCTTGACAATAGATTTACCTGCT CTTCGCCATGTCATCCATGAACAAATTAACCAAACATTTGATGCCTTTGCTCACTTTATTGAAGCGATCAAAAACCCTGC CTCTCGGTTATTAGGCGAAGAAGTGTCTTTAAATGAGCAGAAACTACGCATTTTGAACGAACATATGAACCACACAAAGT GGAAAGAGGAAATTCATCCCTCTGCTAGTCAGCTTATCGATTCTCTTAAAAACTATCGTCTAAACATTACTAATTTAGAG GCTGAACTTAAATTAATTGAAAATGAACGATTGCAAGAACAAACTAAAAGTATTCGGTTAGATATTCAAGGTCTTGCCAA TCGGCTAGAAACTTCAATTTCTTTGCTTAATCACTTTATTTTGCCCCCTTCTTCACCCAATAAAGTGCGTTGGATCGAAG CTCACAAATTGAAATCTTTAATCAATGTACACTTAGTAGATGCAGATTTAGACATTTCGAAATCGCTAGCTGAATTTGTA TTTAGCAAATTTCCTACCGTTATTTTATGTAGCGCGACATTAACTTCTAATCAACAATTTCAGTTTATTCGTAAGCGTTT AGGATTAACCGATAAGCACCTTCCTTATAGACAAATTGAAGAATATATTTATGATTCTCCTTTCGACTACCATAAACAAG CACTACTAGCTGTTCCCACGGATATGCCTCCCCCATCGCACCCAGATTTTAATTGGATTGCTTTTGAAAACATTTGGAAA GCTATTCAAGCTAGCCGTGGACAAGCCTTTGTCCTTTTCACCTCTTACTCTATGTTGCAACAGTGTGCGGAGAAATTATC AGCTCGTATGCATGAGCATGCATATGTCTTATTTAAACAAGGGGAAGAAGCGAGGCAGACGTTATTACATAAATTTAAAA CGACAGATCGAGCCATTTTATTTGGTACAGATTCTTTCTGGGAAGGAGTGGATGTCGCTGGTGATGCACTTCGATGTGTC ATTATTGTCAAACTTCCTTTTAGAGTTCCTACTGAGCCGCTCATTCAAGCACGCACAGAAGCCATTATCGAAAAAGGAGG AGAGCCATTTTTTGAATATTCCGTTCCTCAGGCAGTTGTCAAATTTAAACAAGGCTTTGGACGATTGATTCGCAATCAAT GGGATCGAGGATGTATTGTCTGTTTAGATACTCGATTAGTTACAAAAGGATACGGAAAGCAATTTTTAAACAGTCTTCCT GCCTGTGAAAAAGTTTTTATTAATAGCGAGCAGTTGTGGGCAAAAATGGGAGATTTTTATCGAAAAACTTACCATTTGGT CAAACAAAATCCATTCTCCTAA
Upstream 100 bases:
>100_bases CTCAAAGCCTTCCTTGATTTATTAGAAGCAGAATAAATTAATATCCTCTCTTAATAAAAGAGGGGATATTTGTCTTGTAA CCTTAGGCTCCATTTTTAAT
Downstream 100 bases:
>100_bases GTCATCTAGGAATCAATCAGTATTAAAACTTAAGCCTTAGTGCAGCTTATATAGACTTGTTCATTGCGGTTGATGAAAAT TTTATTCAATCGAACTTCAA
Product: putative ATP-dependent DNA helicase dinG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 753; Mature: 752
Protein sequence:
>753_residues MSHSQLQSRGLQSEKILSLLKPDGLLANSLKGFEFRPQQQQMMTNIIEAYNNDSIALIEAGTGIGKSLAYLIPALIWAAR FNERTVISTNTITLQEQLLSKDIPNLLDALDLNLKAVLVKGMHNYLCIRKLEDVQMEMSIVSSEEAQEIEKIEAWRQQTV DGSRSSLSFAPTHSVWEKVGAENEACSHHECPHYQQCFFFKARRQAQDAHILIVNHHLLFADLMRRADTANYSETSILPT YRRIILDEAHHVEDIATEYFASHLHRIELMRTMGRLGSERHSQQPGKLPILKEKLQLLYNKTPPREISQIVMRLTIDLPA LRHVIHEQINQTFDAFAHFIEAIKNPASRLLGEEVSLNEQKLRILNEHMNHTKWKEEIHPSASQLIDSLKNYRLNITNLE AELKLIENERLQEQTKSIRLDIQGLANRLETSISLLNHFILPPSSPNKVRWIEAHKLKSLINVHLVDADLDISKSLAEFV FSKFPTVILCSATLTSNQQFQFIRKRLGLTDKHLPYRQIEEYIYDSPFDYHKQALLAVPTDMPPPSHPDFNWIAFENIWK AIQASRGQAFVLFTSYSMLQQCAEKLSARMHEHAYVLFKQGEEARQTLLHKFKTTDRAILFGTDSFWEGVDVAGDALRCV IIVKLPFRVPTEPLIQARTEAIIEKGGEPFFEYSVPQAVVKFKQGFGRLIRNQWDRGCIVCLDTRLVTKGYGKQFLNSLP ACEKVFINSEQLWAKMGDFYRKTYHLVKQNPFS
Sequences:
>Translated_753_residues MSHSQLQSRGLQSEKILSLLKPDGLLANSLKGFEFRPQQQQMMTNIIEAYNNDSIALIEAGTGIGKSLAYLIPALIWAAR FNERTVISTNTITLQEQLLSKDIPNLLDALDLNLKAVLVKGMHNYLCIRKLEDVQMEMSIVSSEEAQEIEKIEAWRQQTV DGSRSSLSFAPTHSVWEKVGAENEACSHHECPHYQQCFFFKARRQAQDAHILIVNHHLLFADLMRRADTANYSETSILPT YRRIILDEAHHVEDIATEYFASHLHRIELMRTMGRLGSERHSQQPGKLPILKEKLQLLYNKTPPREISQIVMRLTIDLPA LRHVIHEQINQTFDAFAHFIEAIKNPASRLLGEEVSLNEQKLRILNEHMNHTKWKEEIHPSASQLIDSLKNYRLNITNLE AELKLIENERLQEQTKSIRLDIQGLANRLETSISLLNHFILPPSSPNKVRWIEAHKLKSLINVHLVDADLDISKSLAEFV FSKFPTVILCSATLTSNQQFQFIRKRLGLTDKHLPYRQIEEYIYDSPFDYHKQALLAVPTDMPPPSHPDFNWIAFENIWK AIQASRGQAFVLFTSYSMLQQCAEKLSARMHEHAYVLFKQGEEARQTLLHKFKTTDRAILFGTDSFWEGVDVAGDALRCV IIVKLPFRVPTEPLIQARTEAIIEKGGEPFFEYSVPQAVVKFKQGFGRLIRNQWDRGCIVCLDTRLVTKGYGKQFLNSLP ACEKVFINSEQLWAKMGDFYRKTYHLVKQNPFS >Mature_752_residues SHSQLQSRGLQSEKILSLLKPDGLLANSLKGFEFRPQQQQMMTNIIEAYNNDSIALIEAGTGIGKSLAYLIPALIWAARF NERTVISTNTITLQEQLLSKDIPNLLDALDLNLKAVLVKGMHNYLCIRKLEDVQMEMSIVSSEEAQEIEKIEAWRQQTVD GSRSSLSFAPTHSVWEKVGAENEACSHHECPHYQQCFFFKARRQAQDAHILIVNHHLLFADLMRRADTANYSETSILPTY RRIILDEAHHVEDIATEYFASHLHRIELMRTMGRLGSERHSQQPGKLPILKEKLQLLYNKTPPREISQIVMRLTIDLPAL RHVIHEQINQTFDAFAHFIEAIKNPASRLLGEEVSLNEQKLRILNEHMNHTKWKEEIHPSASQLIDSLKNYRLNITNLEA ELKLIENERLQEQTKSIRLDIQGLANRLETSISLLNHFILPPSSPNKVRWIEAHKLKSLINVHLVDADLDISKSLAEFVF SKFPTVILCSATLTSNQQFQFIRKRLGLTDKHLPYRQIEEYIYDSPFDYHKQALLAVPTDMPPPSHPDFNWIAFENIWKA IQASRGQAFVLFTSYSMLQQCAEKLSARMHEHAYVLFKQGEEARQTLLHKFKTTDRAILFGTDSFWEGVDVAGDALRCVI IVKLPFRVPTEPLIQARTEAIIEKGGEPFFEYSVPQAVVKFKQGFGRLIRNQWDRGCIVCLDTRLVTKGYGKQFLNSLPA CEKVFINSEQLWAKMGDFYRKTYHLVKQNPFS
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1788110, Length=251, Percent_Identity=40.6374501992032, Blast_Score=182, Evalue=7e-47, Organism=Escherichia coli, GI1787018, Length=257, Percent_Identity=29.1828793774319, Blast_Score=108, Evalue=9e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR006054 - InterPro: IPR006310 - InterPro: IPR006055 - InterPro: IPR013520 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 - InterPro: IPR006935 - InterPro: IPR012337 [H]
Pfam domain/function: PF00929 Exonuc_X-T; PF04851 ResIII [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 86582; Mature: 86450
Theoretical pI: Translated: 7.73; Mature: 7.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHSQLQSRGLQSEKILSLLKPDGLLANSLKGFEFRPQQQQMMTNIIEAYNNDSIALIEA CCCHHHHHCCCCHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEC GTGIGKSLAYLIPALIWAARFNERTVISTNTITLQEQLLSKDIPNLLDALDLNLKAVLVK CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCHHHHHHHHCCCHHHHHHH GMHNYLCIRKLEDVQMEMSIVSSEEAQEIEKIEAWRQQTVDGSRSSLSFAPTHSVWEKVG HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC AENEACSHHECPHYQQCFFFKARRQAQDAHILIVNHHLLFADLMRRADTANYSETSILPT CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCHHHH YRRIILDEAHHVEDIATEYFASHLHRIELMRTMGRLGSERHSQQPGKLPILKEKLQLLYN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHC KTPPREISQIVMRLTIDLPALRHVIHEQINQTFDAFAHFIEAIKNPASRLLGEEVSLNEQ CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCHH KLRILNEHMNHTKWKEEIHPSASQLIDSLKNYRLNITNLEAELKLIENERLQEQTKSIRL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCEEEEEEHHHHHHHHHHHHHHHHHHHHHH DIQGLANRLETSISLLNHFILPPSSPNKVRWIEAHKLKSLINVHLVDADLDISKSLAEFV HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHEEEEECCCCHHHHHHHHH FSKFPTVILCSATLTSNQQFQFIRKRLGLTDKHLPYRQIEEYIYDSPFDYHKQALLAVPT HHHCCCEEEEECHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHCCEEEECCC DMPPPSHPDFNWIAFENIWKAIQASRGQAFVLFTSYSMLQQCAEKLSARMHEHAYVLFKQ CCCCCCCCCCCEEHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHEEEEEC GEEARQTLLHKFKTTDRAILFGTDSFWEGVDVAGDALRCVIIVKLPFRVPTEPLIQARTE CHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHH AIIEKGGEPFFEYSVPQAVVKFKQGFGRLIRNQWDRGCIVCLDTRLVTKGYGKQFLNSLP HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCC ACEKVFINSEQLWAKMGDFYRKTYHLVKQNPFS CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SHSQLQSRGLQSEKILSLLKPDGLLANSLKGFEFRPQQQQMMTNIIEAYNNDSIALIEA CCHHHHHCCCCHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEC GTGIGKSLAYLIPALIWAARFNERTVISTNTITLQEQLLSKDIPNLLDALDLNLKAVLVK CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCHHHHHHHHCCCHHHHHHH GMHNYLCIRKLEDVQMEMSIVSSEEAQEIEKIEAWRQQTVDGSRSSLSFAPTHSVWEKVG HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC AENEACSHHECPHYQQCFFFKARRQAQDAHILIVNHHLLFADLMRRADTANYSETSILPT CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCHHHH YRRIILDEAHHVEDIATEYFASHLHRIELMRTMGRLGSERHSQQPGKLPILKEKLQLLYN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHC KTPPREISQIVMRLTIDLPALRHVIHEQINQTFDAFAHFIEAIKNPASRLLGEEVSLNEQ CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCHH KLRILNEHMNHTKWKEEIHPSASQLIDSLKNYRLNITNLEAELKLIENERLQEQTKSIRL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCEEEEEEHHHHHHHHHHHHHHHHHHHHHH DIQGLANRLETSISLLNHFILPPSSPNKVRWIEAHKLKSLINVHLVDADLDISKSLAEFV HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHEEEEECCCCHHHHHHHHH FSKFPTVILCSATLTSNQQFQFIRKRLGLTDKHLPYRQIEEYIYDSPFDYHKQALLAVPT HHHCCCEEEEECHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHCCEEEECCC DMPPPSHPDFNWIAFENIWKAIQASRGQAFVLFTSYSMLQQCAEKLSARMHEHAYVLFKQ CCCCCCCCCCCEEHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHEEEEEC GEEARQTLLHKFKTTDRAILFGTDSFWEGVDVAGDALRCVIIVKLPFRVPTEPLIQARTE CHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHH AIIEKGGEPFFEYSVPQAVVKFKQGFGRLIRNQWDRGCIVCLDTRLVTKGYGKQFLNSLP HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCC ACEKVFINSEQLWAKMGDFYRKTYHLVKQNPFS CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]