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The map label for this gene is 45658618

Identifier: 45658618

GI number: 45658618

Start: 3392721

End: 3393053

Strand: Reverse

Name: 45658618

Synonym: LIC12787

Alternate gene names: NA

Gene position: 3393053-3392721 (Counterclockwise)

Preceding gene: 45658623

Following gene: 45658617

Centisome position: 79.33

GC content: 35.14

Gene sequence:

>333_bases
TTGCTCGATCATAAAGTACGCGACGGTGTTTTGATTGTTTATCTCAAAGGACGTTTGGATGTTTCCATCGCCAACGAGGT
AGAGGAAAATCTAAATGACCTGATCGACAATCAAGGCCATAAAAAAGTAATTTTGAATATGCAAGAAGTGGATTATATGT
CCTCTTCCGGTTTTAGAGCATGTATTTCCACTTTAAGAAAGTTGAATTCTAAAGAAGGTGCATTAAAAATTAGTAATATT
AAACCTGCAGTCAAAAGAATCTTTGATGTAATCGAGTTAACTTCTCTTTTCGATATTTGCGAAACCGAAGACGAGGCTTT
AAAGTCCTTTTAA

Upstream 100 bases:

>100_bases
GGACTCTGGAAATTTCATTTTTAAATCGTTGAACAGTGATTGACAGGTTATTTTCGCCCCCGATAGTTGTCAGTAGCAAA
AAACTATAAGGATTATTCCC

Downstream 100 bases:

>100_bases
AACTGAATGTCTTCTTCTCAACCTCACCGGGTTCTCCGGGAAATCATTTCTACAAAACAAAATGAAATCAAAAAAATTTC
AGCCTGGGACCCTCTTCCAC

Product: anti-sigma factor antagonist

Products: NA

Alternate protein names: Anti-Sigma Factor Antagonist; Anti-Anti-Sigma Regulatory Factor; Anti Sigma Factor Antagonist; Antagonist Of Anti-Sigma Factor; AntiSigma Factor Antagonist; Anti-Sigma B Factor Antagonist

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MLDHKVRDGVLIVYLKGRLDVSIANEVEENLNDLIDNQGHKKVILNMQEVDYMSSSGFRACISTLRKLNSKEGALKISNI
KPAVKRIFDVIELTSLFDICETEDEALKSF

Sequences:

>Translated_110_residues
MLDHKVRDGVLIVYLKGRLDVSIANEVEENLNDLIDNQGHKKVILNMQEVDYMSSSGFRACISTLRKLNSKEGALKISNI
KPAVKRIFDVIELTSLFDICETEDEALKSF
>Mature_110_residues
MLDHKVRDGVLIVYLKGRLDVSIANEVEENLNDLIDNQGHKKVILNMQEVDYMSSSGFRACISTLRKLNSKEGALKISNI
KPAVKRIFDVIELTSLFDICETEDEALKSF

Specific function: Unknown

COG id: COG1366

COG function: function code T; Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12443; Mature: 12443

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS50801 STAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDHKVRDGVLIVYLKGRLDVSIANEVEENLNDLIDNQGHKKVILNMQEVDYMSSSGFRA
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCCCCHHH
CISTLRKLNSKEGALKISNIKPAVKRIFDVIELTSLFDICETEDEALKSF
HHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCC
>Mature Secondary Structure
MLDHKVRDGVLIVYLKGRLDVSIANEVEENLNDLIDNQGHKKVILNMQEVDYMSSSGFRA
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCCCCHHH
CISTLRKLNSKEGALKISNIKPAVKRIFDVIELTSLFDICETEDEALKSF
HHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA