Click here to switch to the map view.

The map label for this gene is 45658467

Identifier: 45658467

GI number: 45658467

Start: 3181948

End: 3182796

Strand: Direct

Name: 45658467

Synonym: LIC12630

Alternate gene names: NA

Gene position: 3181948-3182796 (Clockwise)

Preceding gene: 304570502

Following gene: 45658468

Centisome position: 74.39

GC content: 36.75

Gene sequence:

>849_bases
GTGAATTTCCCCACACTGATCAGATCTGCGATTCAGAGGGAGAATCAAAGAGAATTTACCAAAGCTTTCAATTTATATAA
AGAAGCTCTTTCCTTCACCAGTAATCCTAAAACGATTCTTAAAATACTCAATCGCCAAGCTTGGTGTCAGTATCATATAG
GAAACACTCGGGAAACTTTAAACCTATTTCAAGAAATCATTTCCAAATATTCAAAAGAACCAGAAAGTTATCTTTATTAT
TCCAACTATCTCATTAAGATCAACAATTTCAAACAGGCTAAAAAAATTCTCACCAAAGGAATCGATCTATATCCAGATCA
ATTAGAACTTTATCTTACCCTCGCTTCTCTTTTGAAAGATACCGATCGTTCCAACGAGGCGATCACGGTTTTAAAACAAG
CACTGGCTCAGGAAAAACTTTCGAGAGGCAAAGGAATTTTACGCAAGGATATTTGGGCAGAACTGGGAAATCTTTACTAT
CAAAGGGGAAATTATAACTCTGCTTTGGTTTCTCTCAAAACTTCCATGCGTATGGACAACGACGAAAACTTTCTTCACTA
CGATATGATCGCTCAGTGTTATCTGAAAGTAGCCGATCATAAAAACGCACTCAAATTTATAGACTTATACATTCAATATT
TTGGAGAATCCGATTCGGATATTCTCATTATCAAAGCAAGAGCTCACGCACAACTTGGAGAAAATCATCTAGCATGCGCT
TCTCTCTTACAAGCCTACTCCATGGAAAACGGCCTTAAACTCAACGCAGAGGACATGATCGATTTTGCCCCTCTTCTTCA
AACTGGTTTTTTTGATACATTAGAAAATGTTGAAATAGAAGATCCTTAA

Upstream 100 bases:

>100_bases
TCCGAGAATTTGGGGTTTTATTTTTTTTACCCCGATTCTATTCTCGGATGATCAATAGAAAACTTGATTATTTTTTGAAA
ATTTTTAATCTGTCAAAACT

Downstream 100 bases:

>100_bases
TCTGATTGTAAGAACTTTAAGATCAAAATAGTTCCTTTTAATCAAAATTCAAAACAAAGAATACATACTATAACGTGAAT
TCAACGTAAGAAAATCTAGG

Product: hypothetical protein

Products: NA

Alternate protein names: TPR Repeat-Containing Protein

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MNFPTLIRSAIQRENQREFTKAFNLYKEALSFTSNPKTILKILNRQAWCQYHIGNTRETLNLFQEIISKYSKEPESYLYY
SNYLIKINNFKQAKKILTKGIDLYPDQLELYLTLASLLKDTDRSNEAITVLKQALAQEKLSRGKGILRKDIWAELGNLYY
QRGNYNSALVSLKTSMRMDNDENFLHYDMIAQCYLKVADHKNALKFIDLYIQYFGESDSDILIIKARAHAQLGENHLACA
SLLQAYSMENGLKLNAEDMIDFAPLLQTGFFDTLENVEIEDP

Sequences:

>Translated_282_residues
MNFPTLIRSAIQRENQREFTKAFNLYKEALSFTSNPKTILKILNRQAWCQYHIGNTRETLNLFQEIISKYSKEPESYLYY
SNYLIKINNFKQAKKILTKGIDLYPDQLELYLTLASLLKDTDRSNEAITVLKQALAQEKLSRGKGILRKDIWAELGNLYY
QRGNYNSALVSLKTSMRMDNDENFLHYDMIAQCYLKVADHKNALKFIDLYIQYFGESDSDILIIKARAHAQLGENHLACA
SLLQAYSMENGLKLNAEDMIDFAPLLQTGFFDTLENVEIEDP
>Mature_282_residues
MNFPTLIRSAIQRENQREFTKAFNLYKEALSFTSNPKTILKILNRQAWCQYHIGNTRETLNLFQEIISKYSKEPESYLYY
SNYLIKINNFKQAKKILTKGIDLYPDQLELYLTLASLLKDTDRSNEAITVLKQALAQEKLSRGKGILRKDIWAELGNLYY
QRGNYNSALVSLKTSMRMDNDENFLHYDMIAQCYLKVADHKNALKFIDLYIQYFGESDSDILIIKARAHAQLGENHLACA
SLLQAYSMENGLKLNAEDMIDFAPLLQTGFFDTLENVEIEDP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32675; Mature: 32675

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFPTLIRSAIQRENQREFTKAFNLYKEALSFTSNPKTILKILNRQAWCQYHIGNTRETL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEECCCCHHHHH
NLFQEIISKYSKEPESYLYYSNYLIKINNFKQAKKILTKGIDLYPDQLELYLTLASLLKD
HHHHHHHHHHCCCCCCEEEEEEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TDRSNEAITVLKQALAQEKLSRGKGILRKDIWAELGNLYYQRGNYNSALVSLKTSMRMDN
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
DENFLHYDMIAQCYLKVADHKNALKFIDLYIQYFGESDSDILIIKARAHAQLGENHLACA
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHCCCHHHHH
SLLQAYSMENGLKLNAEDMIDFAPLLQTGFFDTLENVEIEDP
HHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNFPTLIRSAIQRENQREFTKAFNLYKEALSFTSNPKTILKILNRQAWCQYHIGNTRETL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEECCCCHHHHH
NLFQEIISKYSKEPESYLYYSNYLIKINNFKQAKKILTKGIDLYPDQLELYLTLASLLKD
HHHHHHHHHHCCCCCCEEEEEEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TDRSNEAITVLKQALAQEKLSRGKGILRKDIWAELGNLYYQRGNYNSALVSLKTSMRMDN
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
DENFLHYDMIAQCYLKVADHKNALKFIDLYIQYFGESDSDILIIKARAHAQLGENHLACA
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHCCCHHHHH
SLLQAYSMENGLKLNAEDMIDFAPLLQTGFFDTLENVEIEDP
HHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA