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The map label for this gene is bedC1 [H]

Identifier: 45658403

GI number: 45658403

Start: 3105732

End: 3106865

Strand: Reverse

Name: bedC1 [H]

Synonym: LIC12562

Alternate gene names: 45658403

Gene position: 3106865-3105732 (Counterclockwise)

Preceding gene: 45658404

Following gene: 45658401

Centisome position: 72.64

GC content: 34.22

Gene sequence:

>1134_bases
ATGTCTAAAATCAGTACGAAAAAAATTCAAAGACCGAAAGATTTACCTTTTTCAAATACGATTTTGGATCGGTTGCGCAA
ACAATGTGAAATTGGACTTCCAGAAATTTCTGAAATGGAATTTCTACAAACATCCTCTCAAACTAAATTTTTAACGAATC
GGTATCAATGTTCTACTCTTTTTCAACAAGAATTGGATCTACTTAAAAAACGTCCTTATTTAGTAAGTTTTAGTGATCAA
GTTCCTAATCCGGGCGATTTTATTTCTGGAAAATTTTTAGATCGTGAATGGCTTGTTTTGAGAAATGAGAATAAAAATTT
ACGGTTATATAGGAACTCTTGTCTACATCGTGGAACAAGGCTTGTTTCTAGAGGAAAAACTGGTTCAGCTAAAAAGATTG
TATGTCCTTATCATTCATGGACTTACGATCTAAACGGAGATCTGTTAACCAAAGAATGTGAAACAATTCAAGAAAAACTT
TATTCCTTTCCTGTTCTTGAAAAAGCGGGTCTTATCTTTTCCGGGTTTACTGAGAACGTTCTAGATTCGCTTTCATCACT
TTGGGAAGAATGGAAAGTTTACGAATTGGATTCTTATATTCCTTTTGCAATTCAATCGGAAGAAGGTGCATACAATTGGA
AAATAGGAGTGGAGATCTTTTTGGAATCGTATCATATTTCTACGGTTCATAAAAATTCGGTGGCATCCGTGGTCGAAAAA
AACGTCTCTATTATGGATCCTATTGGGGAACATGCAAGAATTCTAATTCCTAATCGAAGTTATAAAAATACTTCTCGACC
AACTCGAAAAGATTTGATCATCACCTATTTTCTTTTTCCATCTACGATTCTTATTCTTTTTAGAGATCATTTCGGAATCA
TCCAGTTTCAACCTATTTCACCGGATCGTACTTTTTGTCTTAGAGCCATTCTGATTCCAGAAAAACCTAAGTCTTCTCGC
ACTATGCGATTTTGGGAAGAAAATCGAGAATTTTTCTTTCGTACTACTTCGGAGGATTTGGGATTAGCGCCTGAAATTCA
AACCGGAGTTCTACAAAATGAATGGATTCAACCTAGTTCTTTAGAACCTGGTATATTTCATTTTCATAATTCTTTAACAA
ATGCATTTATTTGA

Upstream 100 bases:

>100_bases
ACACTTGTTTTCTCTTAAGGAATGAGATTCGTTTTGCGAAACAATCGCTATTTTCAAAAATCGGTTCTTAAAATTAGTAT
AATAATTTTACTAAAAAAAC

Downstream 100 bases:

>100_bases
ATATTTCTTACTTGTTTTTACAGTATGACTTTAACGTGAATTCGACTTAAGAAAATCTTGGCGAATAAAAAAATTAATTC
GACGATTTCTTGAATGCCGC

Product: putative ring hydroxylating dioxygenase alpha-subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MSKISTKKIQRPKDLPFSNTILDRLRKQCEIGLPEISEMEFLQTSSQTKFLTNRYQCSTLFQQELDLLKKRPYLVSFSDQ
VPNPGDFISGKFLDREWLVLRNENKNLRLYRNSCLHRGTRLVSRGKTGSAKKIVCPYHSWTYDLNGDLLTKECETIQEKL
YSFPVLEKAGLIFSGFTENVLDSLSSLWEEWKVYELDSYIPFAIQSEEGAYNWKIGVEIFLESYHISTVHKNSVASVVEK
NVSIMDPIGEHARILIPNRSYKNTSRPTRKDLIITYFLFPSTILILFRDHFGIIQFQPISPDRTFCLRAILIPEKPKSSR
TMRFWEENREFFFRTTSEDLGLAPEIQTGVLQNEWIQPSSLEPGIFHFHNSLTNAFI

Sequences:

>Translated_377_residues
MSKISTKKIQRPKDLPFSNTILDRLRKQCEIGLPEISEMEFLQTSSQTKFLTNRYQCSTLFQQELDLLKKRPYLVSFSDQ
VPNPGDFISGKFLDREWLVLRNENKNLRLYRNSCLHRGTRLVSRGKTGSAKKIVCPYHSWTYDLNGDLLTKECETIQEKL
YSFPVLEKAGLIFSGFTENVLDSLSSLWEEWKVYELDSYIPFAIQSEEGAYNWKIGVEIFLESYHISTVHKNSVASVVEK
NVSIMDPIGEHARILIPNRSYKNTSRPTRKDLIITYFLFPSTILILFRDHFGIIQFQPISPDRTFCLRAILIPEKPKSSR
TMRFWEENREFFFRTTSEDLGLAPEIQTGVLQNEWIQPSSLEPGIFHFHNSLTNAFI
>Mature_376_residues
SKISTKKIQRPKDLPFSNTILDRLRKQCEIGLPEISEMEFLQTSSQTKFLTNRYQCSTLFQQELDLLKKRPYLVSFSDQV
PNPGDFISGKFLDREWLVLRNENKNLRLYRNSCLHRGTRLVSRGKTGSAKKIVCPYHSWTYDLNGDLLTKECETIQEKLY
SFPVLEKAGLIFSGFTENVLDSLSSLWEEWKVYELDSYIPFAIQSEEGAYNWKIGVEIFLESYHISTVHKNSVASVVEKN
VSIMDPIGEHARILIPNRSYKNTSRPTRKDLIITYFLFPSTILILFRDHFGIIQFQPISPDRTFCLRAILIPEKPKSSRT
MRFWEENREFFFRTTSEDLGLAPEIQTGVLQNEWIQPSSLEPGIFHFHNSLTNAFI

Specific function: Unknown

COG id: COG4638

COG function: function code PR; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1788103, Length=356, Percent_Identity=25, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788888, Length=218, Percent_Identity=26.605504587156, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017941
- InterPro:   IPR015881
- InterPro:   IPR015879
- InterPro:   IPR001663 [H]

Pfam domain/function: PF00355 Rieske; PF00848 Ring_hydroxyl_A [H]

EC number: =1.14.12.3 [H]

Molecular weight: Translated: 43905; Mature: 43774

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKISTKKIQRPKDLPFSNTILDRLRKQCEIGLPEISEMEFLQTSSQTKFLTNRYQCSTL
CCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHH
FQQELDLLKKRPYLVSFSDQVPNPGDFISGKFLDREWLVLRNENKNLRLYRNSCLHRGTR
HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEECCEEEEEECCCCCEEEEHHHHHHHHHH
LVSRGKTGSAKKIVCPYHSWTYDLNGDLLTKECETIQEKLYSFPVLEKAGLIFSGFTENV
HHHCCCCCCCCEEEECCCCEEEECCCCEEHHHHHHHHHHHHCCCCHHHCCCEEECCHHHH
LDSLSSLWEEWKVYELDSYIPFAIQSEEGAYNWKIGVEIFLESYHISTVHKNSVASVVEK
HHHHHHHHHHCEEEEECCCCCEEEECCCCCEEEEEEEEEEEEEEEEEEECHHHHHHHHHC
NVSIMDPIGEHARILIPNRSYKNTSRPTRKDLIITYFLFPSTILILFRDHFGIIQFQPIS
CCCEECCCCCCCEEEECCCCCCCCCCCCCHHEEEEEHHHHHHHHHHHHCCCCEEEEEECC
PDRTFCLRAILIPEKPKSSRTMRFWEENREFFFRTTSEDLGLAPEIQTGVLQNEWIQPSS
CCHHEEEEEEECCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCHHHCCHHHCCCCCCC
LEPGIFHFHNSLTNAFI
CCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SKISTKKIQRPKDLPFSNTILDRLRKQCEIGLPEISEMEFLQTSSQTKFLTNRYQCSTL
CCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHH
FQQELDLLKKRPYLVSFSDQVPNPGDFISGKFLDREWLVLRNENKNLRLYRNSCLHRGTR
HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEECCEEEEEECCCCCEEEEHHHHHHHHHH
LVSRGKTGSAKKIVCPYHSWTYDLNGDLLTKECETIQEKLYSFPVLEKAGLIFSGFTENV
HHHCCCCCCCCEEEECCCCEEEECCCCEEHHHHHHHHHHHHCCCCHHHCCCEEECCHHHH
LDSLSSLWEEWKVYELDSYIPFAIQSEEGAYNWKIGVEIFLESYHISTVHKNSVASVVEK
HHHHHHHHHHCEEEEECCCCCEEEECCCCCEEEEEEEEEEEEEEEEEEECHHHHHHHHHC
NVSIMDPIGEHARILIPNRSYKNTSRPTRKDLIITYFLFPSTILILFRDHFGIIQFQPIS
CCCEECCCCCCCEEEECCCCCCCCCCCCCHHEEEEEHHHHHHHHHHHHCCCCEEEEEECC
PDRTFCLRAILIPEKPKSSRTMRFWEENREFFFRTTSEDLGLAPEIQTGVLQNEWIQPSS
CCHHEEEEEEECCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCHHHCCHHHCCCCCCC
LEPGIFHFHNSLTNAFI
CCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8344526 [H]