| Definition | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_005823 |
| Length | 4,277,185 |
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The map label for this gene is gpsA [H]
Identifier: 45658404
GI number: 45658404
Start: 3107471
End: 3109480
Strand: Reverse
Name: gpsA [H]
Synonym: LIC12563
Alternate gene names: 45658404
Gene position: 3109480-3107471 (Counterclockwise)
Preceding gene: 45658407
Following gene: 45658403
Centisome position: 72.7
GC content: 36.72
Gene sequence:
>2010_bases ATGGTTGAAAAAGAATCCAGCGTAGGTAAATGGCAGAAAGAATTTTTTGAAAATATTCATTTATTCAAACGTTCCGGAAT GACGGAAGACGAAGCCAAGAAAATTCTTCAGAAATTTTTATACCTTTCTTCTGTGACTCCTATGCCTCCGGTTATGGAAG TATTCAAAGAACCGAATCTTCTAGAATCCGTAGGAGTTTATACTTCTCCTGAACAAAGATCTAGAGAATTTATGATGGAG TTTCTTTCTCCGATCATGAAACAATTTACCGTTGAAGGTGTAGAAAATTTAAAAGCGGTAAAACCTTTGATTGGTAAATA TCCAGTCACTCTAATTTCCAATCATTTATCTCATCTAGACGCTCCTGCAATTTTTCATCAGTTATATAATTGTTCTCCCG AAGGAAAGTCGATCGCCGAACAACTCGTTTTTATCGCTGGAAGACTAGCGTATGAACCTGATTTTACTAGACTCGGTTTG TATATGTTCGGTACTCTTTTGGTTTGTTCTAAAAGAGATATGGCAGATAATCCTAGTCTTTCCGATTTAATGACTAAAAT CAACATGAGAGCGTTTAGACATTCTCAAAAACTTCAATCGGAAGGTAAGATAGTTGCGATCTTTCCAGAAGGAACCAGAT CCAGAGACGGTAGGTTGATGCCTTTTGTGGAAACAGTTTATCACTATGTCGCAAATAAAGTTATTATTCCTATTTCTCTG GAAAAAACTGATAAAATTCTTCCTACTACGAGTCTTCTTTTTAATCAGGTGAACGGTAAACTCGTGATCGGCAAACCTGT GTTAGTTGGAGAACTTTCTCGCAAACAGATGGATTCTTTTCCAAAAGAAGTGGAACAACTTCAGTTTCCAGAACATGGAG ATAAAAAACAATTTTTGATCGATAACCTGGCTCTTCTTGTTGGTTCTAATCTAAACAAACATCAACACGGAACTTACAGA AATCTTTATAAAGGTGACGTTCCTGGTAAAAATATTCTGATTAAAATTCCTAAGGAACCAGAAGAAAAAATTGTAGTGAT TGGCGCTAGTAGTATGTCAATTGCGGTTGCTACCCTTTTAGCCAACAAAGATGTTTTAGTTTATCTATATCATCCAGATC AGACGTATACGGAACAATGTAACACCGAAAGAAGAGAATTAAAGTATTATCCTCTTTATAAACTTCCTCCTAATTTAGTT TTTACTTCCGATGTGGAAGTTTTAAAAACGGCTACTTTATTTATTCAAGGTACAAATCCTTGGGAGCTCATCAACGTCTA TCCAGAAATTCAACCTTATTTAAATAGAAACAAGGCTCCTTTCTTTAATGTGGTAAAAGGTTTTACTAGTACTGGTTTGA TTTTAGATGAAGTGCAAAACGCTTTTGGTTTAGAAGATGATCGTTTAGGTGTGATTGCTGGAGCTTGTTATCCGGATCAG ATCATGGAGAGAAAAATTTCCGGTTTTGAGATAGCGGCGTCTAACGCGACTCTGATTCCAAGAGTTCAGAAACTTTTCAC TACGGGTTATATTTTTCCGAGACCTGCTAGAATTCCTACGGATGTCAAAGGTGTTCAGTTAGGTGGAGCTCTTAAGACGA TATATGCTCTTGCGATGGGAATTGTAGAAGGTTATTTCACTCAGACTCTTGGAGGAAACGTAGATAATTCTCTTTTTCAC TTATCGAATCGTTTTTTTACAGAGATGACTACGATTGGTACTAAGATGGGAGGTCAGCCCGAAACTTTCTTGGGTCTTTC TGGTCTAACCGATTTTATGCTTTCTTGTTTTGGAACAGATGCAAAGGACAGAAAAACAGGATACGACATTGCTTATGGTT CTTCCTCTGAAAAAATGTCGAATGGATTTTATGGTCTTAAAGTAATGCCCAACCTTATGAAAATTTCTGCTGAAACTCCG GTTCTTTCTGCAGCTTACGAAATTGTAATCAACAAAAAGGATGTAAATCAAATCATTGAGATGTTGGAAGGCAGATTGGC AAGGGTTTAA
Upstream 100 bases:
>100_bases GCCGCAAATGATTTAAATTTCGATTTTATAAAATAGATCGGAATACAAAAGTCTCTTAGAGGCTATTATAAAGAATTTAT TTTGGGACAGGTGTGATACG
Downstream 100 bases:
>100_bases AACATTTTTTCATTTGTTAGAGATTTTGAAAAGGGACGTGAGTTCTCGGAAAAAATTTTTAAAAACAGAAATTCCTACAT TTACGGTAATGATTTATGCC
Product: glycerol-3-phosphate dehydrogenase
Products: NA
Alternate protein names: NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [H]
Number of amino acids: Translated: 669; Mature: 669
Protein sequence:
>669_residues MVEKESSVGKWQKEFFENIHLFKRSGMTEDEAKKILQKFLYLSSVTPMPPVMEVFKEPNLLESVGVYTSPEQRSREFMME FLSPIMKQFTVEGVENLKAVKPLIGKYPVTLISNHLSHLDAPAIFHQLYNCSPEGKSIAEQLVFIAGRLAYEPDFTRLGL YMFGTLLVCSKRDMADNPSLSDLMTKINMRAFRHSQKLQSEGKIVAIFPEGTRSRDGRLMPFVETVYHYVANKVIIPISL EKTDKILPTTSLLFNQVNGKLVIGKPVLVGELSRKQMDSFPKEVEQLQFPEHGDKKQFLIDNLALLVGSNLNKHQHGTYR NLYKGDVPGKNILIKIPKEPEEKIVVIGASSMSIAVATLLANKDVLVYLYHPDQTYTEQCNTERRELKYYPLYKLPPNLV FTSDVEVLKTATLFIQGTNPWELINVYPEIQPYLNRNKAPFFNVVKGFTSTGLILDEVQNAFGLEDDRLGVIAGACYPDQ IMERKISGFEIAASNATLIPRVQKLFTTGYIFPRPARIPTDVKGVQLGGALKTIYALAMGIVEGYFTQTLGGNVDNSLFH LSNRFFTEMTTIGTKMGGQPETFLGLSGLTDFMLSCFGTDAKDRKTGYDIAYGSSSEKMSNGFYGLKVMPNLMKISAETP VLSAAYEIVINKKDVNQIIEMLEGRLARV
Sequences:
>Translated_669_residues MVEKESSVGKWQKEFFENIHLFKRSGMTEDEAKKILQKFLYLSSVTPMPPVMEVFKEPNLLESVGVYTSPEQRSREFMME FLSPIMKQFTVEGVENLKAVKPLIGKYPVTLISNHLSHLDAPAIFHQLYNCSPEGKSIAEQLVFIAGRLAYEPDFTRLGL YMFGTLLVCSKRDMADNPSLSDLMTKINMRAFRHSQKLQSEGKIVAIFPEGTRSRDGRLMPFVETVYHYVANKVIIPISL EKTDKILPTTSLLFNQVNGKLVIGKPVLVGELSRKQMDSFPKEVEQLQFPEHGDKKQFLIDNLALLVGSNLNKHQHGTYR NLYKGDVPGKNILIKIPKEPEEKIVVIGASSMSIAVATLLANKDVLVYLYHPDQTYTEQCNTERRELKYYPLYKLPPNLV FTSDVEVLKTATLFIQGTNPWELINVYPEIQPYLNRNKAPFFNVVKGFTSTGLILDEVQNAFGLEDDRLGVIAGACYPDQ IMERKISGFEIAASNATLIPRVQKLFTTGYIFPRPARIPTDVKGVQLGGALKTIYALAMGIVEGYFTQTLGGNVDNSLFH LSNRFFTEMTTIGTKMGGQPETFLGLSGLTDFMLSCFGTDAKDRKTGYDIAYGSSSEKMSNGFYGLKVMPNLMKISAETP VLSAAYEIVINKKDVNQIIEMLEGRLARV >Mature_669_residues MVEKESSVGKWQKEFFENIHLFKRSGMTEDEAKKILQKFLYLSSVTPMPPVMEVFKEPNLLESVGVYTSPEQRSREFMME FLSPIMKQFTVEGVENLKAVKPLIGKYPVTLISNHLSHLDAPAIFHQLYNCSPEGKSIAEQLVFIAGRLAYEPDFTRLGL YMFGTLLVCSKRDMADNPSLSDLMTKINMRAFRHSQKLQSEGKIVAIFPEGTRSRDGRLMPFVETVYHYVANKVIIPISL EKTDKILPTTSLLFNQVNGKLVIGKPVLVGELSRKQMDSFPKEVEQLQFPEHGDKKQFLIDNLALLVGSNLNKHQHGTYR NLYKGDVPGKNILIKIPKEPEEKIVVIGASSMSIAVATLLANKDVLVYLYHPDQTYTEQCNTERRELKYYPLYKLPPNLV FTSDVEVLKTATLFIQGTNPWELINVYPEIQPYLNRNKAPFFNVVKGFTSTGLILDEVQNAFGLEDDRLGVIAGACYPDQ IMERKISGFEIAASNATLIPRVQKLFTTGYIFPRPARIPTDVKGVQLGGALKTIYALAMGIVEGYFTQTLGGNVDNSLFH LSNRFFTEMTTIGTKMGGQPETFLGLSGLTDFMLSCFGTDAKDRKTGYDIAYGSSSEKMSNGFYGLKVMPNLMKISAETP VLSAAYEIVINKKDVNQIIEMLEGRLARV
Specific function: De novo phospholipid biosynthesis; glycerol-3 phosphate formation. [C]
COG id: COG0240
COG function: function code C; Glycerol-3-phosphate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1790037, Length=334, Percent_Identity=27.5449101796407, Blast_Score=101, Evalue=2e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008927 - InterPro: IPR013328 - InterPro: IPR006168 - InterPro: IPR006109 - InterPro: IPR011128 - InterPro: IPR016040 [H]
Pfam domain/function: PF07479 NAD_Gly3P_dh_C; PF01210 NAD_Gly3P_dh_N [H]
EC number: =1.1.1.94 [H]
Molecular weight: Translated: 75135; Mature: 75135
Theoretical pI: Translated: 8.37; Mature: 8.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVEKESSVGKWQKEFFENIHLFKRSGMTEDEAKKILQKFLYLSSVTPMPPVMEVFKEPNL CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCH LESVGVYTSPEQRSREFMMEFLSPIMKQFTVEGVENLKAVKPLIGKYPVTLISNHLSHLD HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC APAIFHQLYNCSPEGKSIAEQLVFIAGRLAYEPDFTRLGLYMFGTLLVCSKRDMADNPSL HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCH SDLMTKINMRAFRHSQKLQSEGKIVAIFPEGTRSRDGRLMPFVETVYHYVANKVIIPISL HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEE EKTDKILPTTSLLFNQVNGKLVIGKPVLVGELSRKQMDSFPKEVEQLQFPEHGDKKQFLI CCCCCCCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH DNLALLVGSNLNKHQHGTYRNLYKGDVPGKNILIKIPKEPEEKIVVIGASSMSIAVATLL HHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHH ANKDVLVYLYHPDQTYTEQCNTERRELKYYPLYKLPPNLVFTSDVEVLKTATLFIQGTNP CCCCEEEEEECCCCHHHHHHCCHHHHEEECCEEECCCCCEEECCHHHHEEEEEEEECCCC WELINVYPEIQPYLNRNKAPFFNVVKGFTSTGLILDEVQNAFGLEDDRLGVIAGACYPDQ CEEEEECCCHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEECCCHHH IMERKISGFEIAASNATLIPRVQKLFTTGYIFPRPARIPTDVKGVQLGGALKTIYALAMG HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHH IVEGYFTQTLGGNVDNSLFHLSNRFFTEMTTIGTKMGGQPETFLGLSGLTDFMLSCFGTD HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCC AKDRKTGYDIAYGSSSEKMSNGFYGLKVMPNLMKISAETPVLSAAYEIVINKKDVNQIIE CCCCCCCCEEEECCCCHHHHCCEEEEEECCHHHHCCCCCCHHHHHHHEEECHHHHHHHHH MLEGRLARV HHHHHHCCC >Mature Secondary Structure MVEKESSVGKWQKEFFENIHLFKRSGMTEDEAKKILQKFLYLSSVTPMPPVMEVFKEPNL CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCH LESVGVYTSPEQRSREFMMEFLSPIMKQFTVEGVENLKAVKPLIGKYPVTLISNHLSHLD HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC APAIFHQLYNCSPEGKSIAEQLVFIAGRLAYEPDFTRLGLYMFGTLLVCSKRDMADNPSL HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCH SDLMTKINMRAFRHSQKLQSEGKIVAIFPEGTRSRDGRLMPFVETVYHYVANKVIIPISL HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEE EKTDKILPTTSLLFNQVNGKLVIGKPVLVGELSRKQMDSFPKEVEQLQFPEHGDKKQFLI CCCCCCCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH DNLALLVGSNLNKHQHGTYRNLYKGDVPGKNILIKIPKEPEEKIVVIGASSMSIAVATLL HHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHH ANKDVLVYLYHPDQTYTEQCNTERRELKYYPLYKLPPNLVFTSDVEVLKTATLFIQGTNP CCCCEEEEEECCCCHHHHHHCCHHHHEEECCEEECCCCCEEECCHHHHEEEEEEEECCCC WELINVYPEIQPYLNRNKAPFFNVVKGFTSTGLILDEVQNAFGLEDDRLGVIAGACYPDQ CEEEEECCCHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEECCCHHH IMERKISGFEIAASNATLIPRVQKLFTTGYIFPRPARIPTDVKGVQLGGALKTIYALAMG HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHH IVEGYFTQTLGGNVDNSLFHLSNRFFTEMTTIGTKMGGQPETFLGLSGLTDFMLSCFGTD HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCC AKDRKTGYDIAYGSSSEKMSNGFYGLKVMPNLMKISAETPVLSAAYEIVINKKDVNQIIE CCCCCCCCEEEECCCCHHHHCCEEEEEECCHHHHCCCCCCHHHHHHHEEECHHHHHHHHH MLEGRLARV HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA