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The map label for this gene is spsL [H]

Identifier: 45657998

GI number: 45657998

Start: 2599599

End: 2600066

Strand: Reverse

Name: spsL [H]

Synonym: LIC12150

Alternate gene names: 45657998

Gene position: 2600066-2599599 (Counterclockwise)

Preceding gene: 45657999

Following gene: 45657997

Centisome position: 60.79

GC content: 36.75

Gene sequence:

>468_bases
TTGGACTCAATAACAATGAACAAAGTTCTTTTAGAAGGCGTAGTAATTACTTCGTTGAAAGAAATATTCGATCCAAGAGG
ATCCGTACTACATATGATTCGTATCGATGATCCCGAATACAATGGATTCGGAGAATGTTATTTTTCGGAGATTAATCCTC
GTGCTGTAAAGGCCTGGAAGTTTCATAAAAAACAAACGCAAAATTTTACGGTTCCCTCTGGTAGGATCAAATTGATACTT
TTTGATCCTAGAGAAAATTCAAAAACAAAGGGAAAAATTCAGGAAATCATTTTAGGAAGGCCAGAAAATTATCAAAGAGT
TAAAATCCCTCCTCAAATTTGGTACGGTTTTACCTGTATTTCTAAGGAAAAAGCGCTCATTGCAAATTTTACCGACATAC
CTCATGATCCATCCGAAGCTGAGCGTTTGCCAGAACATGGTTCATTCATTCCATTTACTTGGGGCTAG

Upstream 100 bases:

>100_bases
ATTGGTATAGAAATTGGATTGAAAAAAAAGAAAACGTTTATGATTTCACTCTTTCTCAAATTCGTATTTATTGTGAACTA
GCTTCAAAAAAGAATTACAT

Downstream 100 bases:

>100_bases
TGATTCTTAAGAGGATATTAATCACTGGCTCTTTCGGGTTTTTAGGTGGAAGAATTGCGCAATATTTCGGGCAATTAAAC
GAATACGAATTAATTTTAGG

Product: dTDP-4-dehydrorhamnose epimerase

Products: dTDP-4-dehydro-6-deoxy-L-mannose

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MDSITMNKVLLEGVVITSLKEIFDPRGSVLHMIRIDDPEYNGFGECYFSEINPRAVKAWKFHKKQTQNFTVPSGRIKLIL
FDPRENSKTKGKIQEIILGRPENYQRVKIPPQIWYGFTCISKEKALIANFTDIPHDPSEAERLPEHGSFIPFTWG

Sequences:

>Translated_155_residues
MDSITMNKVLLEGVVITSLKEIFDPRGSVLHMIRIDDPEYNGFGECYFSEINPRAVKAWKFHKKQTQNFTVPSGRIKLIL
FDPRENSKTKGKIQEIILGRPENYQRVKIPPQIWYGFTCISKEKALIANFTDIPHDPSEAERLPEHGSFIPFTWG
>Mature_155_residues
MDSITMNKVLLEGVVITSLKEIFDPRGSVLHMIRIDDPEYNGFGECYFSEINPRAVKAWKFHKKQTQNFTVPSGRIKLIL
FDPRENSKTKGKIQEIILGRPENYQRVKIPPQIWYGFTCISKEKALIANFTDIPHDPSEAERLPEHGSFIPFTWG

Specific function: Unknown

COG id: COG1898

COG function: function code M; dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To dTDP-4-dehydrorhamnose reductase [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR000888
- InterPro:   IPR014710
- ProDom:   PD001462 [H]

Pfam domain/function: PF00908 dTDP_sugar_isom [H]

EC number: 5.1.3.13

Molecular weight: Translated: 17880; Mature: 17880

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSITMNKVLLEGVVITSLKEIFDPRGSVLHMIRIDDPEYNGFGECYFSEINPRAVKAWK
CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEECCCCCHHHHHH
FHKKQTQNFTVPSGRIKLILFDPRENSKTKGKIQEIILGRPENYQRVKIPPQIWYGFTCI
HHHHCCCCEECCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEECCHHHEEEEEEE
SKEKALIANFTDIPHDPSEAERLPEHGSFIPFTWG
CCCCEEEEECCCCCCCCHHHHHCCCCCCEEEEECC
>Mature Secondary Structure
MDSITMNKVLLEGVVITSLKEIFDPRGSVLHMIRIDDPEYNGFGECYFSEINPRAVKAWK
CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEECCCCCHHHHHH
FHKKQTQNFTVPSGRIKLILFDPRENSKTKGKIQEIILGRPENYQRVKIPPQIWYGFTCI
HHHHCCCCEECCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEECCHHHEEEEEEE
SKEKALIANFTDIPHDPSEAERLPEHGSFIPFTWG
CCCCEEEEECCCCCCCCHHHHHCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: dTDP-4-dehydro-6-deoxy-D-glucose

Specific reaction: dTDP-4-dehydro-6-deoxy-D-glucose = dTDP-4-dehydro-6-deoxy-L-mannose

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]