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The map label for this gene is rpsF

Identifier: 45657961

GI number: 45657961

Start: 2553980

End: 2554255

Strand: Reverse

Name: rpsF

Synonym: LIC12113

Alternate gene names: 45657961

Gene position: 2554255-2553980 (Counterclockwise)

Preceding gene: 45657962

Following gene: 45657960

Centisome position: 59.72

GC content: 41.67

Gene sequence:

>276_bases
TTGAGAAACTACGAACTCACCACAATTACACGTGTGAGCTCTCGGGAAGTTGCAAAGTCCGAAATTCAGGAAACTTTGAA
AAAACATTCCGTGAGCGTCACAGCCGAAGAAGATTGGGGCCAAAGAAAACTCTGGCATCCGATTAAACATGAAGAACAGG
GAATCTTTCACCACTATAAATGTAGCGCAGATCCAAACGCCATTGAAAAAGTGGAAAAGGAATTCTTAATCAATCAAAAT
ATTCTTCGTTCTATGGTCGTTCGCCTCCATGGCTAA

Upstream 100 bases:

>100_bases
TCTACCTTGACCCCTGTCTCTAAACGCAAAAAATAGGCTAAATTATCGGTTCTTCTGCTCGTCGCAAACCGCAGACGGGC
TATAACCATAGGAGAAACTT

Downstream 100 bases:

>100_bases
TGATATTAATAGAGTAACTTTAGTCGGGCGTTTCACGCGCGACCCTGAATTCAAATCGATCAATGGAACCTCTTTGGTAA
ACTTTTCCTTAGCAAATGGT

Product: 30S ribosomal protein S6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 91; Mature: 91

Protein sequence:

>91_residues
MRNYELTTITRVSSREVAKSEIQETLKKHSVSVTAEEDWGQRKLWHPIKHEEQGIFHHYKCSADPNAIEKVEKEFLINQN
ILRSMVVRLHG

Sequences:

>Translated_91_residues
MRNYELTTITRVSSREVAKSEIQETLKKHSVSVTAEEDWGQRKLWHPIKHEEQGIFHHYKCSADPNAIEKVEKEFLINQN
ILRSMVVRLHG
>Mature_91_residues
MRNYELTTITRVSSREVAKSEIQETLKKHSVSVTAEEDWGQRKLWHPIKHEEQGIFHHYKCSADPNAIEKVEKEFLINQN
ILRSMVVRLHG

Specific function: Binds together with S18 to 16S ribosomal RNA [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000529
- InterPro:   IPR020814
- InterPro:   IPR014717 [H]

Pfam domain/function: PF01250 Ribosomal_S6 [H]

EC number: NA

Molecular weight: Translated: 10711; Mature: 10711

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNYELTTITRVSSREVAKSEIQETLKKHSVSVTAEEDWGQRKLWHPIKHEEQGIFHHYK
CCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCEEEEE
CSADPNAIEKVEKEFLINQNILRSMVVRLHG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRNYELTTITRVSSREVAKSEIQETLKKHSVSVTAEEDWGQRKLWHPIKHEEQGIFHHYK
CCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCEEEEE
CSADPNAIEKVEKEFLINQNILRSMVVRLHG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA