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The map label for this gene is 45656827

Identifier: 45656827

GI number: 45656827

Start: 1132755

End: 1133387

Strand: Reverse

Name: 45656827

Synonym: LIC10939

Alternate gene names: NA

Gene position: 1133387-1132755 (Counterclockwise)

Preceding gene: 45656829

Following gene: 45656826

Centisome position: 26.5

GC content: 44.39

Gene sequence:

>633_bases
ATGTCCATTCCGAACGTCATTGAGTTAAACTTTCCGGTCCTTGGGTCCTTACTCCCAGCCGACCACGGTTATGGGCTGTA
TTCCGCCATTTGCCATCTTTGTCCCGAATTACACGAACACGATTCACTCAGCATTCAAACGATCTCAGGCCTCCCGGATC
GACCCGGAATCCTTCGACTAACAGCCAATTCACGACTGAGAATTCGCATTCCCGTAGAACAAATTCCTCTTGTGTATCCT
CTTGCTGGAAAAAGTCTTACGATCGGCATTCATAAGATTCAACTCTCCATTCCCGCGATCCGTATCCTACAACCTTATTC
TGTTTTAAAGTCTCGTATAACTGTAATTAAAGGTTTTTCGGAACCGGAAAATTTTTTAGAAGCGGCGCAAAAACAACTCA
ATGCAAGGGAAATTTCCGGTAGGGTTACTTTGCTCAAAGATCCGGAAGGAAATCCAAAAAGAAACACGATTAAGATCAAA
CGATTTACGATCGTTGGCTTTGGATTGAAAGTAGAAGGTTTGAACGAAAAGGATTCTCTTGAGTTACAAGCCACCGGTCT
AGGCGGAAAACGTCGCATGGGCTGCGGCGTGTTTTATGGAGACGCAAATAAAGTAGAGAGTAAAGCTTCGTGA

Upstream 100 bases:

>100_bases
TTAAAATTATATTTTATTTTAATTTTAGAATATTCTAAAAATATTTTGTCTTTAAAAAATAAAATGGAATCCGAAAAATG
AATTTCTCCGAGTATATTGT

Downstream 100 bases:

>100_bases
TCCTTCTCGCAAAATCATATCCTGGAATCGAAAAACAATTGAAGAGTGGTGACCCAGAAAGTTGGGCTCTTTTAGAACAT
CACTCCTCCGCTACATATCA

Product: hypothetical protein

Products: NA

Alternate protein names: CRISPR-Associated Cas6 Family Protein; CRISPR-Associated Protein Cas6-Related Protein; Crispr-Associated Protein

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSIPNVIELNFPVLGSLLPADHGYGLYSAICHLCPELHEHDSLSIQTISGLPDRPGILRLTANSRLRIRIPVEQIPLVYP
LAGKSLTIGIHKIQLSIPAIRILQPYSVLKSRITVIKGFSEPENFLEAAQKQLNAREISGRVTLLKDPEGNPKRNTIKIK
RFTIVGFGLKVEGLNEKDSLELQATGLGGKRRMGCGVFYGDANKVESKAS

Sequences:

>Translated_210_residues
MSIPNVIELNFPVLGSLLPADHGYGLYSAICHLCPELHEHDSLSIQTISGLPDRPGILRLTANSRLRIRIPVEQIPLVYP
LAGKSLTIGIHKIQLSIPAIRILQPYSVLKSRITVIKGFSEPENFLEAAQKQLNAREISGRVTLLKDPEGNPKRNTIKIK
RFTIVGFGLKVEGLNEKDSLELQATGLGGKRRMGCGVFYGDANKVESKAS
>Mature_209_residues
SIPNVIELNFPVLGSLLPADHGYGLYSAICHLCPELHEHDSLSIQTISGLPDRPGILRLTANSRLRIRIPVEQIPLVYPL
AGKSLTIGIHKIQLSIPAIRILQPYSVLKSRITVIKGFSEPENFLEAAQKQLNAREISGRVTLLKDPEGNPKRNTIKIKR
FTIVGFGLKVEGLNEKDSLELQATGLGGKRRMGCGVFYGDANKVESKAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23042; Mature: 22911

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIPNVIELNFPVLGSLLPADHGYGLYSAICHLCPELHEHDSLSIQTISGLPDRPGILRL
CCCCCEEEECCCHHHCCCCCCCCCCHHHHHHHHCHHHCCCCCEEEEEECCCCCCCCEEEE
TANSRLRIRIPVEQIPLVYPLAGKSLTIGIHKIQLSIPAIRILQPYSVLKSRITVIKGFS
ECCCEEEEEECHHHCCEEEEECCCEEEEEEEEEEEECCEEEEECCHHHHHHHEEEEECCC
EPENFLEAAQKQLNAREISGRVTLLKDPEGNPKRNTIKIKRFTIVGFGLKVEGLNEKDSL
CHHHHHHHHHHHCCCEECCCEEEEEECCCCCCCCCEEEEEEEEEEEEEEEEECCCCCCCE
ELQATGLGGKRRMGCGVFYGDANKVESKAS
EEEEECCCCCCCCCCEEEECCCCCCCCCCC
>Mature Secondary Structure 
SIPNVIELNFPVLGSLLPADHGYGLYSAICHLCPELHEHDSLSIQTISGLPDRPGILRL
CCCCEEEECCCHHHCCCCCCCCCCHHHHHHHHCHHHCCCCCEEEEEECCCCCCCCEEEE
TANSRLRIRIPVEQIPLVYPLAGKSLTIGIHKIQLSIPAIRILQPYSVLKSRITVIKGFS
ECCCEEEEEECHHHCCEEEEECCCEEEEEEEEEEEECCEEEEECCHHHHHHHEEEEECCC
EPENFLEAAQKQLNAREISGRVTLLKDPEGNPKRNTIKIKRFTIVGFGLKVEGLNEKDSL
CHHHHHHHHHHHCCCEECCCEEEEEECCCCCCCCCEEEEEEEEEEEEEEEEECCCCCCCE
ELQATGLGGKRRMGCGVFYGDANKVESKAS
EEEEECCCCCCCCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA