| Definition | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_005823 |
| Length | 4,277,185 |
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The map label for this gene is ygcB [C]
Identifier: 45656826
GI number: 45656826
Start: 1130506
End: 1132758
Strand: Reverse
Name: ygcB [C]
Synonym: LIC10938
Alternate gene names: 45656826
Gene position: 1132758-1130506 (Counterclockwise)
Preceding gene: 45656827
Following gene: 45656825
Centisome position: 26.48
GC content: 45.27
Gene sequence:
>2253_bases GTGATCCTTCTCGCAAAATCATATCCTGGAATCGAAAAACAATTGAAGAGTGGTGACCCAGAAAGTTGGGCTCTTTTAGA ACATCACTCCTCCGCTACATATCAGGTAGCGGAGGTTTTACTCAAAATCTTAGAACCCATCCTCAGAAAATGGACCCGAC TTTCAGAATCCGAATACAATAAATTTGTTTTAGTCGTCTGTCTTTCCGCCGGTTTACACGATCTCGGTAAGGCGAACGAG GATTTTCAAAAAATGCTCCGACGGAGAAAATACCTTCAAAGGTTTCGTCATGAAATCTGGTCGGTCCTCGCATTAACCGG ATCAGGCCCCTTTTCCGATTGGTTTCGAAAAACAATCGGAGACGAAACCTGGGTTCGTATCGGACAAATGGGAATTCTCT CTCATCATCTCAAAGCAACTCGAGAGACTCTGTATGCGGATCATGAGACCGCTGAAATCAAAGTTTTCTGGAAAGACCAA GGAGTCATAAAAATGTTCCAGTCTATTTGTAGATTGGCCGGCATTTCCTCTCCCGATTTTTCCTCTCCTTCGATTTCTTC TTACACCTGCCTTGGCGAAGATGCGGACAAATCCATTCGAATTTGGACCCGAGAGATCCTAAATGCAAGAATCGATCCAC GATACCAACATTCTATCGGTGCCGTGAGAGCGATGATCATTGCTGCGGATCGACTCGCTTCCGCATACAAAGGCGCGGAC GCCTTGAAACTCTGGGCGACAGAGGCTCTCAATCGAGTTCTTTCCGAACAGGAATGTTCCAAAATCGTTAAACAAGGTTT AGGCGAAAAGAATCTACGACCATTTCAAAAACAGGTCGGAGATTCTACTTCCAGAGTCACTCTCGTTCGTGCGGGATGTG GAAACGGAAAAACGATCGCTGCTTTTCAATGGGCTAAAACTCACTCGGCGGGTCGCAAACTTTTTTTCTGTTATCCGACT ATGGGTACGGCCACCGAAGGTTTTAGAGATTATGTGTCTGATATTCCCGGTTTAGATGCGCTTCTCAGCCATTCTCGCGC TTCGTTGGATCTTGGAGAACTGGCAAGCACGGGAGAAGAAGACGAGGGAGATTCTCTAAACATGCACAGTCGTATGCTTC AGGAATGGACCGCACAAGTGACTTTCTGCACGGTCGATCAGATACTCGGTCTACTACAAAATTACCGTTCTTCTTTGACT CTTTCTCCGGCGATTTTTTTAGGCGCGTTCGTTTTCGACGAGATTCATATGTATGATTCCATTCTATTCGGAAATCTACT TACGTTTTTAAAAGAGTTTTCGCACACTTCGATTCTACTGATGACCGCTTCCCTTCCGGAAACGATGCTCTCCGCCATTC AAGAAACCGTAGGCGCCGACTTGGGGCCGGTGATCTCTGGAGAAGCTCAGATCGAAGAACGTCTTCGGTATCGAATTTTA CATTCAAGCCGAGAGGACGCTTTGCAAAAGGCGATTCAAGAATTTAAGAACGGAGGTAGGGTTCTCTGGGTCTGCAACAA GGTGGAACATTGTTTAAAATTGTATGATGAACTTTCCGAAAAATACGACATCGAAGCCCTTGTCTATCATAGTCGATTTA AGTACGAAGATCGTAAAGAAAGACATCGGGCCGTAATAGACTCCTTTCAAGAAGGTTATAAAAAATCTCTTCCCGTTTTT GCGATCACCACACAAGTCTGTGAAGTTTCCTTGGACATCAGCGCGACTCTACTTATAAGCGAGCTTTGTCCGTTTGCTGC ATTGATTCAACGATTGGGAAGAGTGAACCGTCCGGGTCAAGAGATGGAGGGCATTGCACAGGCTTTGATCATTCCATTTC AAGGAAAACCCTACGAAAAGGAAAATGAAGACGACGGTGAATCCGAACTAGAACGCTGCAAAGAGATCCTGAAACCTCTC CTAGACCGGGAACTTTCTCAGAAAGATTTGGCGCTTGCACTTGAAAATGCAAAAGGAACCGAACATCAAAAAATACCGTC CCAATGGCTTTCGTTAGGATGGGAAGCGGAACCGGATTCGATCCGTGAAAGCGGATATACTCTGGATGTCATTTTAGAAA GCGACGCGTACAAAGTTCTGAAAAACGAAAGACCTTGGGAAAAGTCAAAACTCTACACAATTCCTATGCCGATTCAAAAA CAATTCAGTTATGGAGAGCCTCCTCTGCGTATCCCGGTCGTCCCCGATTCTCAAATTCAATATTCATCCGTTCGAGGCGG AGAATGGAATTGA
Upstream 100 bases:
>100_bases AGGATTCTCTTGAGTTACAAGCCACCGGTCTAGGCGGAAAACGTCGCATGGGCTGCGGCGTGTTTTATGGAGACGCAAAT AAAGTAGAGAGTAAAGCTTC
Downstream 100 bases:
>100_bases AACTAAGATGAGTTCCCGTCCAAGCGCTTCTATCGAGACAACTCCTAACACTCCGGTCGTATTTCAAAGAGGATTGTCTG AATGCACGTCTCCCCTACTT
Product: ATP-dependent RNA helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 750; Mature: 750
Protein sequence:
>750_residues MILLAKSYPGIEKQLKSGDPESWALLEHHSSATYQVAEVLLKILEPILRKWTRLSESEYNKFVLVVCLSAGLHDLGKANE DFQKMLRRRKYLQRFRHEIWSVLALTGSGPFSDWFRKTIGDETWVRIGQMGILSHHLKATRETLYADHETAEIKVFWKDQ GVIKMFQSICRLAGISSPDFSSPSISSYTCLGEDADKSIRIWTREILNARIDPRYQHSIGAVRAMIIAADRLASAYKGAD ALKLWATEALNRVLSEQECSKIVKQGLGEKNLRPFQKQVGDSTSRVTLVRAGCGNGKTIAAFQWAKTHSAGRKLFFCYPT MGTATEGFRDYVSDIPGLDALLSHSRASLDLGELASTGEEDEGDSLNMHSRMLQEWTAQVTFCTVDQILGLLQNYRSSLT LSPAIFLGAFVFDEIHMYDSILFGNLLTFLKEFSHTSILLMTASLPETMLSAIQETVGADLGPVISGEAQIEERLRYRIL HSSREDALQKAIQEFKNGGRVLWVCNKVEHCLKLYDELSEKYDIEALVYHSRFKYEDRKERHRAVIDSFQEGYKKSLPVF AITTQVCEVSLDISATLLISELCPFAALIQRLGRVNRPGQEMEGIAQALIIPFQGKPYEKENEDDGESELERCKEILKPL LDRELSQKDLALALENAKGTEHQKIPSQWLSLGWEAEPDSIRESGYTLDVILESDAYKVLKNERPWEKSKLYTIPMPIQK QFSYGEPPLRIPVVPDSQIQYSSVRGGEWN
Sequences:
>Translated_750_residues MILLAKSYPGIEKQLKSGDPESWALLEHHSSATYQVAEVLLKILEPILRKWTRLSESEYNKFVLVVCLSAGLHDLGKANE DFQKMLRRRKYLQRFRHEIWSVLALTGSGPFSDWFRKTIGDETWVRIGQMGILSHHLKATRETLYADHETAEIKVFWKDQ GVIKMFQSICRLAGISSPDFSSPSISSYTCLGEDADKSIRIWTREILNARIDPRYQHSIGAVRAMIIAADRLASAYKGAD ALKLWATEALNRVLSEQECSKIVKQGLGEKNLRPFQKQVGDSTSRVTLVRAGCGNGKTIAAFQWAKTHSAGRKLFFCYPT MGTATEGFRDYVSDIPGLDALLSHSRASLDLGELASTGEEDEGDSLNMHSRMLQEWTAQVTFCTVDQILGLLQNYRSSLT LSPAIFLGAFVFDEIHMYDSILFGNLLTFLKEFSHTSILLMTASLPETMLSAIQETVGADLGPVISGEAQIEERLRYRIL HSSREDALQKAIQEFKNGGRVLWVCNKVEHCLKLYDELSEKYDIEALVYHSRFKYEDRKERHRAVIDSFQEGYKKSLPVF AITTQVCEVSLDISATLLISELCPFAALIQRLGRVNRPGQEMEGIAQALIIPFQGKPYEKENEDDGESELERCKEILKPL LDRELSQKDLALALENAKGTEHQKIPSQWLSLGWEAEPDSIRESGYTLDVILESDAYKVLKNERPWEKSKLYTIPMPIQK QFSYGEPPLRIPVVPDSQIQYSSVRGGEWN >Mature_750_residues MILLAKSYPGIEKQLKSGDPESWALLEHHSSATYQVAEVLLKILEPILRKWTRLSESEYNKFVLVVCLSAGLHDLGKANE DFQKMLRRRKYLQRFRHEIWSVLALTGSGPFSDWFRKTIGDETWVRIGQMGILSHHLKATRETLYADHETAEIKVFWKDQ GVIKMFQSICRLAGISSPDFSSPSISSYTCLGEDADKSIRIWTREILNARIDPRYQHSIGAVRAMIIAADRLASAYKGAD ALKLWATEALNRVLSEQECSKIVKQGLGEKNLRPFQKQVGDSTSRVTLVRAGCGNGKTIAAFQWAKTHSAGRKLFFCYPT MGTATEGFRDYVSDIPGLDALLSHSRASLDLGELASTGEEDEGDSLNMHSRMLQEWTAQVTFCTVDQILGLLQNYRSSLT LSPAIFLGAFVFDEIHMYDSILFGNLLTFLKEFSHTSILLMTASLPETMLSAIQETVGADLGPVISGEAQIEERLRYRIL HSSREDALQKAIQEFKNGGRVLWVCNKVEHCLKLYDELSEKYDIEALVYHSRFKYEDRKERHRAVIDSFQEGYKKSLPVF AITTQVCEVSLDISATLLISELCPFAALIQRLGRVNRPGQEMEGIAQALIIPFQGKPYEKENEDDGESELERCKEILKPL LDRELSQKDLALALENAKGTEHQKIPSQWLSLGWEAEPDSIRESGYTLDVILESDAYKVLKNERPWEKSKLYTIPMPIQK QFSYGEPPLRIPVVPDSQIQYSSVRGGEWN
Specific function: Unknown
COG id: COG1203
COG function: function code R; Predicted helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1789119, Length=402, Percent_Identity=24.1293532338308, Blast_Score=98, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR006474 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD [H]
EC number: NA
Molecular weight: Translated: 84881; Mature: 84881
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILLAKSYPGIEKQLKSGDPESWALLEHHSSATYQVAEVLLKILEPILRKWTRLSESEYN CEEEECCCCCHHHHHHCCCCCCEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCC KFVLVVCLSAGLHDLGKANEDFQKMLRRRKYLQRFRHEIWSVLALTGSGPFSDWFRKTIG CEEEEHHHHHCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC DETWVRIGQMGILSHHLKATRETLYADHETAEIKVFWKDQGVIKMFQSICRLAGISSPDF CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCC SSPSISSYTCLGEDADKSIRIWTREILNARIDPRYQHSIGAVRAMIIAADRLASAYKGAD CCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH ALKLWATEALNRVLSEQECSKIVKQGLGEKNLRPFQKQVGDSTSRVTLVRAGCGNGKTIA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCEEE AFQWAKTHSAGRKLFFCYPTMGTATEGFRDYVSDIPGLDALLSHSRASLDLGELASTGEE EEEEHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHCCCCC DEGDSLNMHSRMLQEWTAQVTFCTVDQILGLLQNYRSSLTLSPAIFLGAFVFDEIHMYDS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH ILFGNLLTFLKEFSHTSILLMTASLPETMLSAIQETVGADLGPVISGEAQIEERLRYRIL HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH HSSREDALQKAIQEFKNGGRVLWVCNKVEHCLKLYDELSEKYDIEALVYHSRFKYEDRKE HCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCHHHEEEHHHCCCHHHHH RHRAVIDSFQEGYKKSLPVFAITTQVCEVSLDISATLLISELCPFAALIQRLGRVNRPGQ HHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCH EMEGIAQALIIPFQGKPYEKENEDDGESELERCKEILKPLLDRELSQKDLALALENAKGT HHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC EHQKIPSQWLSLGWEAEPDSIRESGYTLDVILESDAYKVLKNERPWEKSKLYTIPMPIQK CHHHCHHHHHHCCCCCCCHHHHHCCCEEEEEECCCHHHHHCCCCCCCCCCEEECCCCHHH QFSYGEPPLRIPVVPDSQIQYSSVRGGEWN HCCCCCCCEEEECCCCCCCEECCCCCCCCC >Mature Secondary Structure MILLAKSYPGIEKQLKSGDPESWALLEHHSSATYQVAEVLLKILEPILRKWTRLSESEYN CEEEECCCCCHHHHHHCCCCCCEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCC KFVLVVCLSAGLHDLGKANEDFQKMLRRRKYLQRFRHEIWSVLALTGSGPFSDWFRKTIG CEEEEHHHHHCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC DETWVRIGQMGILSHHLKATRETLYADHETAEIKVFWKDQGVIKMFQSICRLAGISSPDF CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCC SSPSISSYTCLGEDADKSIRIWTREILNARIDPRYQHSIGAVRAMIIAADRLASAYKGAD CCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH ALKLWATEALNRVLSEQECSKIVKQGLGEKNLRPFQKQVGDSTSRVTLVRAGCGNGKTIA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCEEE AFQWAKTHSAGRKLFFCYPTMGTATEGFRDYVSDIPGLDALLSHSRASLDLGELASTGEE EEEEHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHCCCCC DEGDSLNMHSRMLQEWTAQVTFCTVDQILGLLQNYRSSLTLSPAIFLGAFVFDEIHMYDS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH ILFGNLLTFLKEFSHTSILLMTASLPETMLSAIQETVGADLGPVISGEAQIEERLRYRIL HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH HSSREDALQKAIQEFKNGGRVLWVCNKVEHCLKLYDELSEKYDIEALVYHSRFKYEDRKE HCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCHHHEEEHHHCCCHHHHH RHRAVIDSFQEGYKKSLPVFAITTQVCEVSLDISATLLISELCPFAALIQRLGRVNRPGQ HHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCH EMEGIAQALIIPFQGKPYEKENEDDGESELERCKEILKPLLDRELSQKDLALALENAKGT HHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC EHQKIPSQWLSLGWEAEPDSIRESGYTLDVILESDAYKVLKNERPWEKSKLYTIPMPIQK CHHHCHHHHHHCCCCCCCHHHHHCCCEEEEEECCCHHHHHCCCCCCCCCCEEECCCCHHH QFSYGEPPLRIPVVPDSQIQYSSVRGGEWN HCCCCCCCEEEECCCCCCCEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]