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The map label for this gene is 45656829

Identifier: 45656829

GI number: 45656829

Start: 1134467

End: 1134751

Strand: Reverse

Name: 45656829

Synonym: LIC10941

Alternate gene names: NA

Gene position: 1134751-1134467 (Counterclockwise)

Preceding gene: 45656830

Following gene: 45656827

Centisome position: 26.53

GC content: 37.54

Gene sequence:

>285_bases
ATGAAACATTGGAGATTAGTATCTTATGATATTCGAGAACCAAAACGACTTCGGAGAGTTGCCAAAATTATGGAGGGTTT
CGGAGAAAGAATCCAATATAGCGTTTTTCGAATCTATTCTACAGACAAAGAATTAGAAAAACTACGGTGGAAATTGGCAA
AAGTCACCGAAGAAGAAGACAATATATTTTATCTGACTCTTTGCACCAAGTGTGCTTCGGGCGCCCATACCCAAGAAAAA
AAATCCGCGTGGCCAGAAGCTCCAAAAACATTAAAAATTCTATAA

Upstream 100 bases:

>100_bases
ACTCGCTTTCTTATTACCGGATGATTGAGCTTGAAGTAAGACTGTTAGAAAAAGAATGGAGCGGAGAAGCGAATATATTT
GCACAAGCGAGGTTAAGATA

Downstream 100 bases:

>100_bases
TTCAAGTATCTCTTCAGGGCATAGACATAATTCTACTTAAAAAGCAAAACTAAATCTTTGAATCTATATTTAATTCCAAG
ACATATCCAATCTTTACTCG

Product: hypothetical protein

Products: NA

Alternate protein names: CRISPR-Associated Cas2 Family Protein

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MKHWRLVSYDIREPKRLRRVAKIMEGFGERIQYSVFRIYSTDKELEKLRWKLAKVTEEEDNIFYLTLCTKCASGAHTQEK
KSAWPEAPKTLKIL

Sequences:

>Translated_94_residues
MKHWRLVSYDIREPKRLRRVAKIMEGFGERIQYSVFRIYSTDKELEKLRWKLAKVTEEEDNIFYLTLCTKCASGAHTQEK
KSAWPEAPKTLKIL
>Mature_94_residues
MKHWRLVSYDIREPKRLRRVAKIMEGFGERIQYSVFRIYSTDKELEKLRWKLAKVTEEEDNIFYLTLCTKCASGAHTQEK
KSAWPEAPKTLKIL

Specific function: Unknown

COG id: COG1343

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11233; Mature: 11233

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHWRLVSYDIREPKRLRRVAKIMEGFGERIQYSVFRIYSTDKELEKLRWKLAKVTEEED
CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHCCCCC
NIFYLTLCTKCASGAHTQEKKSAWPEAPKTLKIL
CEEEEEEEHHHCCCCCCCHHHHCCCCCCCEEECC
>Mature Secondary Structure
MKHWRLVSYDIREPKRLRRVAKIMEGFGERIQYSVFRIYSTDKELEKLRWKLAKVTEEED
CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHCCCCC
NIFYLTLCTKCASGAHTQEKKSAWPEAPKTLKIL
CEEEEEEEHHHCCCCCCCHHHHCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA