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The map label for this gene is ygeR [H]

Identifier: 45656175

GI number: 45656175

Start: 308018

End: 308683

Strand: Reverse

Name: ygeR [H]

Synonym: LIC10271

Alternate gene names: 45656175

Gene position: 308683-308018 (Counterclockwise)

Preceding gene: 45656176

Following gene: 45656174

Centisome position: 7.22

GC content: 35.14

Gene sequence:

>666_bases
ATGCGTCGTGTTTTTTCAAACTTGGGAATCTGGATGTTTTTTTTCGTTCTTCCTAAGATCTTTGCCGCCGGATCACAGAA
TCCTTCCATTTACACCGTCCAAAAAGGAGATACCTATTTTTCTCTGGGAAAAAAATTTAAAGTCGATTATCATAAAATTA
TGGAATGGAACGGCAAAAAAGAAAAAGATTCTCTATTACCTGGAGAAATTTTAAAAATTCAAAAACCTACAAGTACAGAA
AACCAAAAGATCGTTTCTAAAAATACAAAATCAAACTTTGTAAAAAGCGAATCTGTAGAATCTTCAAAACCAAATTTTAA
ATTTCCACTCAAAAATAGAACTCCTATACAAAGTCATTTTACCAAATTGAGTTTTGCCCCTCATAAAGGAATTTTGTTCA
AAGCCACAAGACACGCAGAAGTTCGTCCTGCTTCTCCCGGCAAAGTCTTGGTCGTAGATGAAATGGAAGGATATAAAAAA
TACGTAATATTAGAACATAAGAATGGTTATTCCACCGTATACGCCAATTTAAAAACGGTCTCTGTAAACGAAGGTGAAAC
CGTAGACCCTTCTAAGATATTAGGTTCTTTAGAGTCCGGCAAAGGGCTCTATTTTCAACTCAACCATGGAAGTTCTGCGA
TCGATCCGAGTTTACAAATTCGTTAA

Upstream 100 bases:

>100_bases
GGCTCTTTTTTATTTAGTGTATTTCTAAAACTGTTTTCCTTTTTTTATTTTCCGAAGTTCTAGCTTCCTGTTTTCGGGTT
TTCTGCCGATATAGAAAGAG

Downstream 100 bases:

>100_bases
AAATTAAATATTAAAAATATGGAATACGAACTCGTAAATGCATGCATCGTAACTAAGGATAGATGGATTTCAAACGGAAG
CATCGTAATTAAAGACGGTA

Product: cell wall hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MRRVFSNLGIWMFFFVLPKIFAAGSQNPSIYTVQKGDTYFSLGKKFKVDYHKIMEWNGKKEKDSLLPGEILKIQKPTSTE
NQKIVSKNTKSNFVKSESVESSKPNFKFPLKNRTPIQSHFTKLSFAPHKGILFKATRHAEVRPASPGKVLVVDEMEGYKK
YVILEHKNGYSTVYANLKTVSVNEGETVDPSKILGSLESGKGLYFQLNHGSSAIDPSLQIR

Sequences:

>Translated_221_residues
MRRVFSNLGIWMFFFVLPKIFAAGSQNPSIYTVQKGDTYFSLGKKFKVDYHKIMEWNGKKEKDSLLPGEILKIQKPTSTE
NQKIVSKNTKSNFVKSESVESSKPNFKFPLKNRTPIQSHFTKLSFAPHKGILFKATRHAEVRPASPGKVLVVDEMEGYKK
YVILEHKNGYSTVYANLKTVSVNEGETVDPSKILGSLESGKGLYFQLNHGSSAIDPSLQIR
>Mature_221_residues
MRRVFSNLGIWMFFFVLPKIFAAGSQNPSIYTVQKGDTYFSLGKKFKVDYHKIMEWNGKKEKDSLLPGEILKIQKPTSTE
NQKIVSKNTKSNFVKSESVESSKPNFKFPLKNRTPIQSHFTKLSFAPHKGILFKATRHAEVRPASPGKVLVVDEMEGYKK
YVILEHKNGYSTVYANLKTVSVNEGETVDPSKILGSLESGKGLYFQLNHGSSAIDPSLQIR

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=207, Percent_Identity=26.5700483091787, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 24951; Mature: 24951

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRVFSNLGIWMFFFVLPKIFAAGSQNPSIYTVQKGDTYFSLGKKFKVDYHKIMEWNGKK
CCCHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCEEECCHHEEEECCCCC
EKDSLLPGEILKIQKPTSTENQKIVSKNTKSNFVKSESVESSKPNFKFPLKNRTPIQSHF
CCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCEECCCCCCCCCCEEECCCCCCCHHHHH
TKLSFAPHKGILFKATRHAEVRPASPGKVLVVDEMEGYKKYVILEHKNGYSTVYANLKTV
HEEECCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEEE
SVNEGETVDPSKILGSLESGKGLYFQLNHGSSAIDPSLQIR
ECCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEC
>Mature Secondary Structure
MRRVFSNLGIWMFFFVLPKIFAAGSQNPSIYTVQKGDTYFSLGKKFKVDYHKIMEWNGKK
CCCHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCEEECCHHEEEECCCCC
EKDSLLPGEILKIQKPTSTENQKIVSKNTKSNFVKSESVESSKPNFKFPLKNRTPIQSHF
CCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCEECCCCCCCCCCEEECCCCCCCHHHHH
TKLSFAPHKGILFKATRHAEVRPASPGKVLVVDEMEGYKKYVILEHKNGYSTVYANLKTV
HEEECCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEEE
SVNEGETVDPSKILGSLESGKGLYFQLNHGSSAIDPSLQIR
ECCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]