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The map label for this gene is 45358168

Identifier: 45358168

GI number: 45358168

Start: 600046

End: 600600

Strand: Direct

Name: 45358168

Synonym: MMP0605

Alternate gene names: NA

Gene position: 600046-600600 (Clockwise)

Preceding gene: 45358167

Following gene: 45358173

Centisome position: 36.12

GC content: 34.95

Gene sequence:

>555_bases
ATGTACGAGAATGTGGAAGTAGTGAAGATTCCAAAAGAGAGAACCGGTATCCTTATTGGAACTCACGGAGAAGTTAGAAA
AAAGCTTGAAAGTGATCTTGGAGTTGAATTAGAGATTGATTCGGAAGGAGAAGTTAATATTTATTCAACGGACGAACAAA
AAGACCCACTGGCACTCTGGAAAGCGAGAGATATTGTAAAAGCTATTGGACGGGGATTTAACCCTGAAAAAGCTTTAAAA
CTGGTTTCAGATGAATATGCATTTGAAGTAATCGATATTTCAGAATATGGAAATTCTGATAAAGCTATTCAAAGGTTAAA
AGGAAGAATTATTGGAAGTAGCGGAAAATCCCGAAGATATGTTGAGGAATTAACTTCAACCCACATTTCAGTTTATGGTA
AAACTGTTTCAATTATCGGGGAAATTGAAACTGCAAAAATTGCAAAAGATGCAATTGAAATGCTTTTAAGGGGAACTTCG
CACTCAAAAATGTACAAATTTTTAGAAAGACACAGACAAGATGTCAAAAGAAGTGAACTTAGACTCTGGAAATAA

Upstream 100 bases:

>100_bases
AAATGGCAAAAACATATTAATAAAATTTCTACAAAATCTTTTTTTAAGTATAAATTATATAATATTTAACGAAATTTAAC
TGCGTAATTGGTGAGATTTT

Downstream 100 bases:

>100_bases
ATTTATCTTTTTTTTTAAATTTTAAAAATAGTAAAATTATATTGGTGGAAGAATTATTCTTTTTTGGATCTCATTTCTTT
TATTCTTTTGATCATGAGTC

Product: putative RNA-processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MYENVEVVKIPKERTGILIGTHGEVRKKLESDLGVELEIDSEGEVNIYSTDEQKDPLALWKARDIVKAIGRGFNPEKALK
LVSDEYAFEVIDISEYGNSDKAIQRLKGRIIGSSGKSRRYVEELTSTHISVYGKTVSIIGEIETAKIAKDAIEMLLRGTS
HSKMYKFLERHRQDVKRSELRLWK

Sequences:

>Translated_184_residues
MYENVEVVKIPKERTGILIGTHGEVRKKLESDLGVELEIDSEGEVNIYSTDEQKDPLALWKARDIVKAIGRGFNPEKALK
LVSDEYAFEVIDISEYGNSDKAIQRLKGRIIGSSGKSRRYVEELTSTHISVYGKTVSIIGEIETAKIAKDAIEMLLRGTS
HSKMYKFLERHRQDVKRSELRLWK
>Mature_184_residues
MYENVEVVKIPKERTGILIGTHGEVRKKLESDLGVELEIDSEGEVNIYSTDEQKDPLALWKARDIVKAIGRGFNPEKALK
LVSDEYAFEVIDISEYGNSDKAIQRLKGRIIGSSGKSRRYVEELTSTHISVYGKTVSIIGEIETAKIAKDAIEMLLRGTS
HSKMYKFLERHRQDVKRSELRLWK

Specific function: Unknown

COG id: COG1094

COG function: function code R; Predicted RNA-binding protein (contains KH domains)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 KH domains [H]

Homologues:

Organism=Homo sapiens, GI10047140, Length=138, Percent_Identity=34.7826086956522, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI117676403, Length=174, Percent_Identity=29.8850574712644, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17537417, Length=167, Percent_Identity=28.7425149700599, Blast_Score=67, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6319791, Length=172, Percent_Identity=27.3255813953488, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR019964
- InterPro:   IPR004088
- InterPro:   IPR018111 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 20953; Mature: 20953

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYENVEVVKIPKERTGILIGTHGEVRKKLESDLGVELEIDSEGEVNIYSTDEQKDPLALW
CCCCCEEEEECCCCCCEEEECCHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCHHHH
KARDIVKAIGRGFNPEKALKLVSDEYAFEVIDISEYGNSDKAIQRLKGRIIGSSGKSRRY
HHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEHHHCCCHHHHHHHHHCEEECCCCCCHHH
VEELTSTHISVYGKTVSIIGEIETAKIAKDAIEMLLRGTSHSKMYKFLERHRQDVKRSEL
HHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RLWK
CCCC
>Mature Secondary Structure
MYENVEVVKIPKERTGILIGTHGEVRKKLESDLGVELEIDSEGEVNIYSTDEQKDPLALW
CCCCCEEEEECCCCCCEEEECCHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCHHHH
KARDIVKAIGRGFNPEKALKLVSDEYAFEVIDISEYGNSDKAIQRLKGRIIGSSGKSRRY
HHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEHHHCCCHHHHHHHHHCEEECCCCCCHHH
VEELTSTHISVYGKTVSIIGEIETAKIAKDAIEMLLRGTSHSKMYKFLERHRQDVKRSEL
HHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RLWK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]