Click here to switch to the map view.

The map label for this gene is tdcF [H]

Identifier: 42523256

GI number: 42523256

Start: 1700549

End: 1700926

Strand: Direct

Name: tdcF [H]

Synonym: Bd1766

Alternate gene names: 42523256

Gene position: 1700549-1700926 (Clockwise)

Preceding gene: 42523255

Following gene: 42523257

Centisome position: 44.95

GC content: 47.88

Gene sequence:

>378_bases
ATGAAAAAAGTTATTCACACAGACAATGCGCCGAAAGCGGTGGGTCCTTATTCTCAGGCAATTCAGATCGGGGACATGTT
GTTCTGTTCCGGTCAGATTTCCATCGACCCAAAAACCAATGAAGTTTTCACGGGCGATATCAAAACCCAGACTGAAATGG
TTTTGAAAAACATCGAAGCGGTACTGGCCGCTGCCAACATGAAATACAGCAACATCGTGAAAACCACGATCTTTCTGACC
AGCATGTCGGACTTTGCGACTGTAAACGAGATCTACTCCAAAGCTTTCACAGACGCTCCTCCGGCGCGTTCGACTGTGGC
GGTTGCAGGTTTGCCTAAAGGTGTGAACGTGGAGATCGAAGTCATTGCGCATCGCTAA

Upstream 100 bases:

>100_bases
AACGTGCGCTTCAGAACCATCGGCGACGGCCCTTTCAGCGCGGGAATCATCTTCTACTTCTAATCCTCAAACAAATTTCC
AATCTCCAAAAAGGATATTT

Downstream 100 bases:

>100_bases
GTCCCTGTTGAAATCCCGTTCATTCTGGGCTCTGGCATTCCTGAGCGCGGTGGTGCTTTACCGCTTCGTCGATGAATTTC
AGAAGGTGCAGAGTGAGCGG

Product: putative translation initiation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MKKVIHTDNAPKAVGPYSQAIQIGDMLFCSGQISIDPKTNEVFTGDIKTQTEMVLKNIEAVLAAANMKYSNIVKTTIFLT
SMSDFATVNEIYSKAFTDAPPARSTVAVAGLPKGVNVEIEVIAHR

Sequences:

>Translated_125_residues
MKKVIHTDNAPKAVGPYSQAIQIGDMLFCSGQISIDPKTNEVFTGDIKTQTEMVLKNIEAVLAAANMKYSNIVKTTIFLT
SMSDFATVNEIYSKAFTDAPPARSTVAVAGLPKGVNVEIEVIAHR
>Mature_125_residues
MKKVIHTDNAPKAVGPYSQAIQIGDMLFCSGQISIDPKTNEVFTGDIKTQTEMVLKNIEAVLAAANMKYSNIVKTTIFLT
SMSDFATVNEIYSKAFTDAPPARSTVAVAGLPKGVNVEIEVIAHR

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=123, Percent_Identity=43.0894308943089, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87082213, Length=128, Percent_Identity=45.3125, Blast_Score=122, Evalue=9e-30,
Organism=Escherichia coli, GI87082396, Length=128, Percent_Identity=49.21875, Blast_Score=121, Evalue=1e-29,
Organism=Escherichia coli, GI1787245, Length=123, Percent_Identity=29.2682926829268, Blast_Score=63, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=46.7213114754098, Blast_Score=121, Evalue=8e-29,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=46.7213114754098, Blast_Score=121, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=46.7213114754098, Blast_Score=121, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6322138, Length=119, Percent_Identity=42.0168067226891, Blast_Score=96, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=42.7184466019417, Blast_Score=88, Evalue=4e-19,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=40.650406504065, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13490; Mature: 13490

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVIHTDNAPKAVGPYSQAIQIGDMLFCSGQISIDPKTNEVFTGDIKTQTEMVLKNIEA
CCCEECCCCCCCCCCCHHHHEEECCEEEECCEEEECCCCCEEEECCCCHHHHHHHHHHHH
VLAAANMKYSNIVKTTIFLTSMSDFATVNEIYSKAFTDAPPARSTVAVAGLPKGVNVEIE
HHHHCCCCHHHHHEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEE
VIAHR
EEEEC
>Mature Secondary Structure
MKKVIHTDNAPKAVGPYSQAIQIGDMLFCSGQISIDPKTNEVFTGDIKTQTEMVLKNIEA
CCCEECCCCCCCCCCCHHHHEEECCEEEECCEEEECCCCCEEEECCCCHHHHHHHHHHHH
VLAAANMKYSNIVKTTIFLTSMSDFATVNEIYSKAFTDAPPARSTVAVAGLPKGVNVEIE
HHHHCCCCHHHHHEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEE
VIAHR
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA