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The map label for this gene is yafD [C]

Identifier: 42523207

GI number: 42523207

Start: 1645133

End: 1645879

Strand: Direct

Name: yafD [C]

Synonym: Bd1711

Alternate gene names: 42523207

Gene position: 1645133-1645879 (Clockwise)

Preceding gene: 42523206

Following gene: 42523211

Centisome position: 43.49

GC content: 50.2

Gene sequence:

>747_bases
ATGGTTCCTTTTATCGTTCCGGCCAAAGAAAAAGTGCTGCTGAAAATCGGAGAGGCCCCAAAGCTTCCTCTGGCATCTTC
GCAGTTTGATATCTTTGTCTGGAACGTTTACAAGGGGCAGAAGGCTCATCTGTTTGAGCAGGACTTCAAGCGGCTGGGGG
AAAACAAGGATTTTATTTTCCTGCAAGAGGCTTTGCTTGATCAGCGCATGCCCGCCATGTGGCGCTCGGATTTTTCCGCC
TATGAATGGCATCTGGCGCAGAGTTTTCACTATAAAAAAGATCTTTCCAGCACCGGGGTCGCGATTGGTTCAAAGCTGAC
ACCTTTGTCGGTGGACTTTATCCGGTCCAAAACCCGCGAGCTGTTCTGGCTGACGCCCAAGCTGACCCTGTTCAGTGAAT
ACAGTTTCGGTGAAAAGAAAGCCCTGTTCGTCTGCACGCATGTGTTGAATTTTGTGACCTTAAAAGCGTTCACGTCTTCG
CTGTACGAAATCGCAGAGAAGATCTCACACTTCGACGGCCCCGTGGTGTTGGCCGGGGACTTCAACACCTGGAACTTTAA
ACGCTACATGATCATGAAGTCCATCTTCCGTGAGTTGGGCCTGGAGCATCTGGATTTGGAAGATGACGGGCGCATCCTGA
AGTTGGATCACGTCTTTGTCCGTGGCTTTGACGTGGTCAAAGCCAAAGTCCACCACACGATCGTAAGCTCCGATCATTTC
CCCCTGGAAATCACCCTCAAACTCTAA

Upstream 100 bases:

>100_bases
GGTATCTGTCGACCTTGTTGGCCGAACAGGAACGGGCAGAGGCATTGAGTTTGCCTGTCGCTACGGTGGATGAAAATTAC
CTGAGTAAAGTGAAGTAAAA

Downstream 100 bases:

>100_bases
AAGGTTCCCGGTTCTTTTTCGAGTCTACACTGCGTCAGCTTTACTTGCTGTTAAGTACAGCTTTTTCCAATCGATCCATC
CGGGCTTTCAGTTCTGCCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MVPFIVPAKEKVLLKIGEAPKLPLASSQFDIFVWNVYKGQKAHLFEQDFKRLGENKDFIFLQEALLDQRMPAMWRSDFSA
YEWHLAQSFHYKKDLSSTGVAIGSKLTPLSVDFIRSKTRELFWLTPKLTLFSEYSFGEKKALFVCTHVLNFVTLKAFTSS
LYEIAEKISHFDGPVVLAGDFNTWNFKRYMIMKSIFRELGLEHLDLEDDGRILKLDHVFVRGFDVVKAKVHHTIVSSDHF
PLEITLKL

Sequences:

>Translated_248_residues
MVPFIVPAKEKVLLKIGEAPKLPLASSQFDIFVWNVYKGQKAHLFEQDFKRLGENKDFIFLQEALLDQRMPAMWRSDFSA
YEWHLAQSFHYKKDLSSTGVAIGSKLTPLSVDFIRSKTRELFWLTPKLTLFSEYSFGEKKALFVCTHVLNFVTLKAFTSS
LYEIAEKISHFDGPVVLAGDFNTWNFKRYMIMKSIFRELGLEHLDLEDDGRILKLDHVFVRGFDVVKAKVHHTIVSSDHF
PLEITLKL
>Mature_248_residues
MVPFIVPAKEKVLLKIGEAPKLPLASSQFDIFVWNVYKGQKAHLFEQDFKRLGENKDFIFLQEALLDQRMPAMWRSDFSA
YEWHLAQSFHYKKDLSSTGVAIGSKLTPLSVDFIRSKTRELFWLTPKLTLFSEYSFGEKKALFVCTHVLNFVTLKAFTSS
LYEIAEKISHFDGPVVLAGDFNTWNFKRYMIMKSIFRELGLEHLDLEDDGRILKLDHVFVRGFDVVKAKVHHTIVSSDHF
PLEITLKL

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family [H]

Homologues:

Organism=Escherichia coli, GI1786403, Length=236, Percent_Identity=30.5084745762712, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135
- InterPro:   IPR022958 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 28740; Mature: 28740

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPFIVPAKEKVLLKIGEAPKLPLASSQFDIFVWNVYKGQKAHLFEQDFKRLGENKDFIF
CCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEE
LQEALLDQRMPAMWRSDFSAYEWHLAQSFHYKKDLSSTGVAIGSKLTPLSVDFIRSKTRE
EHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHCCCE
LFWLTPKLTLFSEYSFGEKKALFVCTHVLNFVTLKAFTSSLYEIAEKISHFDGPVVLAGD
EEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
FNTWNFKRYMIMKSIFRELGLEHLDLEDDGRILKLDHVFVRGFDVVKAKVHHTIVSSDHF
CCCCCHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEHEEEHHHHHHHHHHHHHEECCCCC
PLEITLKL
CEEEEEEC
>Mature Secondary Structure
MVPFIVPAKEKVLLKIGEAPKLPLASSQFDIFVWNVYKGQKAHLFEQDFKRLGENKDFIF
CCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEE
LQEALLDQRMPAMWRSDFSAYEWHLAQSFHYKKDLSSTGVAIGSKLTPLSVDFIRSKTRE
EHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHCCCE
LFWLTPKLTLFSEYSFGEKKALFVCTHVLNFVTLKAFTSSLYEIAEKISHFDGPVVLAGD
EEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
FNTWNFKRYMIMKSIFRELGLEHLDLEDDGRILKLDHVFVRGFDVVKAKVHHTIVSSDHF
CCCCCHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEHEEEHHHHHHHHHHHHHEECCCCC
PLEITLKL
CEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]