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The map label for this gene is himA [H]

Identifier: 42523141

GI number: 42523141

Start: 1575719

End: 1576090

Strand: Direct

Name: himA [H]

Synonym: Bd1639

Alternate gene names: 42523141

Gene position: 1575719-1576090 (Clockwise)

Preceding gene: 42523140

Following gene: 42523142

Centisome position: 41.65

GC content: 45.16

Gene sequence:

>372_bases
ATGACTATTATGGCAGGCCAGAACTTAGGTAAATCAACTGTGACTAAGGCCGATATCGTCGAGAACGTATATCAGAAGAT
CGGTTTCTCCAAGAAAGAGGCTTCTGAATTGGTGGAACTTGTTTTCGACACCTTGAAGACTGTTCTTCAAGATGGCGAAA
AAGTTAAGATTTCTGGTTTCGGTAATTTCGTTGTTCGTGGCAAGAACGAGCGTATTGGTCGCAACCCGCAAACCGGGGAG
CAGATCAAGATCTCTGCACGCCGTGTTCTTACTTTCCGTCCGTCTCAGGTTTTGAAGGCGATGTTGAACGGTGAAGAGTA
CGCTCACTTAAAAGATGAGGACGATGATGATGACTACGACGACAATGAGTAA

Upstream 100 bases:

>100_bases
TCTGAAGAAGAATTTTGACCTTTCTGTGAGATAAATTCTTGATTGTTTTCAGTTAGTTGTTACGATTTTATGTAGCACTT
GAAGAATTTTAATGGAGTGA

Downstream 100 bases:

>100_bases
TCCGTCCCTGGAAGCTGACAGCTCCGAGCTGTCGCTAGGGGATCATCATATTGATTTTGTCGAAGAGACCGAAAAAGCCA
CTTCCGTTCCTGTGACGGCG

Product: integration host factor, alpha subunit

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MTIMAGQNLGKSTVTKADIVENVYQKIGFSKKEASELVELVFDTLKTVLQDGEKVKISGFGNFVVRGKNERIGRNPQTGE
QIKISARRVLTFRPSQVLKAMLNGEEYAHLKDEDDDDDYDDNE

Sequences:

>Translated_123_residues
MTIMAGQNLGKSTVTKADIVENVYQKIGFSKKEASELVELVFDTLKTVLQDGEKVKISGFGNFVVRGKNERIGRNPQTGE
QIKISARRVLTFRPSQVLKAMLNGEEYAHLKDEDDDDDYDDNE
>Mature_122_residues
TIMAGQNLGKSTVTKADIVENVYQKIGFSKKEASELVELVFDTLKTVLQDGEKVKISGFGNFVVRGKNERIGRNPQTGEQ
IKISARRVLTFRPSQVLKAMLNGEEYAHLKDEDDDDDYDDNE

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=101, Percent_Identity=54.4554455445545, Blast_Score=112, Evalue=7e-27,
Organism=Escherichia coli, GI1786644, Length=88, Percent_Identity=32.9545454545455, Blast_Score=64, Evalue=3e-12,
Organism=Escherichia coli, GI1790433, Length=84, Percent_Identity=36.9047619047619, Blast_Score=62, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 13826; Mature: 13695

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIMAGQNLGKSTVTKADIVENVYQKIGFSKKEASELVELVFDTLKTVLQDGEKVKISGF
CEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
GNFVVRGKNERIGRNPQTGEQIKISARRVLTFRPSQVLKAMLNGEEYAHLKDEDDDDDYD
CCEEEECCCCCCCCCCCCCCEEEEEEHEEEEECHHHHHHHHHCCCCEECCCCCCCCCCCC
DNE
CCC
>Mature Secondary Structure 
TIMAGQNLGKSTVTKADIVENVYQKIGFSKKEASELVELVFDTLKTVLQDGEKVKISGF
EECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
GNFVVRGKNERIGRNPQTGEQIKISARRVLTFRPSQVLKAMLNGEEYAHLKDEDDDDDYD
CCEEEECCCCCCCCCCCCCCEEEEEEHEEEEECHHHHHHHHHCCCCEECCCCCCCCCCCC
DNE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA