| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is gmk [H]
Identifier: 42523073
GI number: 42523073
Start: 1493569
End: 1494039
Strand: Direct
Name: gmk [H]
Synonym: Bd1568
Alternate gene names: 42523073
Gene position: 1493569-1494039 (Clockwise)
Preceding gene: 42523072
Following gene: 42523074
Centisome position: 39.48
GC content: 48.62
Gene sequence:
>471_bases TTGGTGGATATCGTCACTTTCACAACGCGCTCTATCCGCCAGGGAGAGACGCCGGGTCTGCAGTACAATTTCATTGATCA TGCTGATTTTGAACAGAAGATCAAAGAGGGCTTCTTTGTGGAGTGGGCGAAGGTTCACACCAATTTCTATGGAACCTCAT ATTCGTCCCTGGAAACAGCCTGGAATCAGGGTAAAACCGCCATTATGGACATCGACATCCAGGGTGTGGCGACCTTTAAG TCCAAGTTCCCGGACGCTAAAACCGTCTTTATCCATCCCCCGAGTATTGACGAGCTGCGTCGTCGCATTGAAAAGCGCGA TGGCAAGGTCCCTGCGGACATTGAAGTTCGTATGGCCAATGCCGAAAAGGAGATCCGTGAGGCCTCCAAGTTCGATTATC AGATCGTCAACGACGTGTTTGAGAAATCCTATGGGGAATTTAAGAAAATCGTTGAAGATTTGCTAGCTTAG
Upstream 100 bases:
>100_bases ACGTTCAGTAATTATGAAAACTCGCATGATTATCGTCGCCGCTCCAAGTGGCGCAGGAAAAAGCAGCTTTGTCGAAAGGA TCACCCGGGAGGATTCCCGA
Downstream 100 bases:
>100_bases CTGTAATTTGGCCTGATCTATTTGCTGGAGGCGTAATGGCTCGTGTAACCGTTGAAGATTGCTTGGAAAAAGTACCTAAC AGATTTGCCCTTGTTTTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: GMP kinase [H]
Number of amino acids: Translated: 156; Mature: 156
Protein sequence:
>156_residues MVDIVTFTTRSIRQGETPGLQYNFIDHADFEQKIKEGFFVEWAKVHTNFYGTSYSSLETAWNQGKTAIMDIDIQGVATFK SKFPDAKTVFIHPPSIDELRRRIEKRDGKVPADIEVRMANAEKEIREASKFDYQIVNDVFEKSYGEFKKIVEDLLA
Sequences:
>Translated_156_residues MVDIVTFTTRSIRQGETPGLQYNFIDHADFEQKIKEGFFVEWAKVHTNFYGTSYSSLETAWNQGKTAIMDIDIQGVATFK SKFPDAKTVFIHPPSIDELRRRIEKRDGKVPADIEVRMANAEKEIREASKFDYQIVNDVFEKSYGEFKKIVEDLLA >Mature_156_residues MVDIVTFTTRSIRQGETPGLQYNFIDHADFEQKIKEGFFVEWAKVHTNFYGTSYSSLETAWNQGKTAIMDIDIQGVATFK SKFPDAKTVFIHPPSIDELRRRIEKRDGKVPADIEVRMANAEKEIREASKFDYQIVNDVFEKSYGEFKKIVEDLLA
Specific function: Essential for recycling GMP and indirectly, cGMP [H]
COG id: COG0194
COG function: function code F; Guanylate kinase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 guanylate kinase-like domain [H]
Homologues:
Organism=Homo sapiens, GI226874831, Length=154, Percent_Identity=29.8701298701299, Blast_Score=86, Evalue=1e-17, Organism=Homo sapiens, GI226874833, Length=154, Percent_Identity=29.8701298701299, Blast_Score=86, Evalue=1e-17, Organism=Homo sapiens, GI4504221, Length=154, Percent_Identity=29.8701298701299, Blast_Score=86, Evalue=1e-17, Organism=Homo sapiens, GI38570142, Length=153, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=2e-16, Organism=Homo sapiens, GI21361598, Length=161, Percent_Identity=26.7080745341615, Blast_Score=67, Evalue=8e-12, Organism=Homo sapiens, GI111154074, Length=163, Percent_Identity=28.2208588957055, Blast_Score=65, Evalue=2e-11, Organism=Homo sapiens, GI192447426, Length=155, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=2e-11, Organism=Homo sapiens, GI4557529, Length=155, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=3e-11, Organism=Escherichia coli, GI1790080, Length=147, Percent_Identity=38.7755102040816, Blast_Score=107, Evalue=3e-25, Organism=Caenorhabditis elegans, GI193203132, Length=155, Percent_Identity=34.8387096774194, Blast_Score=94, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17508835, Length=155, Percent_Identity=34.8387096774194, Blast_Score=93, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17557440, Length=150, Percent_Identity=30.6666666666667, Blast_Score=67, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6320662, Length=151, Percent_Identity=38.4105960264901, Blast_Score=109, Evalue=1e-25, Organism=Drosophila melanogaster, GI21356141, Length=151, Percent_Identity=32.4503311258278, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI45554481, Length=146, Percent_Identity=30.8219178082192, Blast_Score=76, Evalue=1e-14, Organism=Drosophila melanogaster, GI85724806, Length=146, Percent_Identity=30.8219178082192, Blast_Score=76, Evalue=1e-14, Organism=Drosophila melanogaster, GI161077626, Length=146, Percent_Identity=30.8219178082192, Blast_Score=75, Evalue=1e-14, Organism=Drosophila melanogaster, GI116007136, Length=146, Percent_Identity=30.8219178082192, Blast_Score=75, Evalue=1e-14, Organism=Drosophila melanogaster, GI24640542, Length=146, Percent_Identity=30.8219178082192, Blast_Score=75, Evalue=1e-14, Organism=Drosophila melanogaster, GI45554489, Length=146, Percent_Identity=30.8219178082192, Blast_Score=75, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008144 - InterPro: IPR008145 - InterPro: IPR020590 - InterPro: IPR017665 [H]
Pfam domain/function: PF00625 Guanylate_kin [H]
EC number: =2.7.4.8 [H]
Molecular weight: Translated: 18022; Mature: 18022
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS00856 GUANYLATE_KINASE_1 ; PS50052 GUANYLATE_KINASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVDIVTFTTRSIRQGETPGLQYNFIDHADFEQKIKEGFFVEWAKVHTNFYGTSYSSLETA CCEEEEECCHHHHCCCCCCEEEECCCCCCHHHHHHCCHHEEHHHHHHHHCCCCHHHHHHH WNQGKTAIMDIDIQGVATFKSKFPDAKTVFIHPPSIDELRRRIEKRDGKVPADIEVRMAN HCCCCEEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECC AEKEIREASKFDYQIVNDVFEKSYGEFKKIVEDLLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MVDIVTFTTRSIRQGETPGLQYNFIDHADFEQKIKEGFFVEWAKVHTNFYGTSYSSLETA CCEEEEECCHHHHCCCCCCEEEECCCCCCHHHHHHCCHHEEHHHHHHHHCCCCHHHHHHH WNQGKTAIMDIDIQGVATFKSKFPDAKTVFIHPPSIDELRRRIEKRDGKVPADIEVRMAN HCCCCEEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECC AEKEIREASKFDYQIVNDVFEKSYGEFKKIVEDLLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA