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The map label for this gene is rnpO

Identifier: 42523074

GI number: 42523074

Start: 1494075

End: 1494314

Strand: Direct

Name: rnpO

Synonym: Bd1569

Alternate gene names: 42523074

Gene position: 1494075-1494314 (Clockwise)

Preceding gene: 42523073

Following gene: 42523075

Centisome position: 39.49

GC content: 47.5

Gene sequence:

>240_bases
ATGGCTCGTGTAACCGTTGAAGATTGCTTGGAAAAAGTACCTAACAGATTTGCCCTTGTTTTGATGGTTGCAAAACGTGC
GAAGCAACTTCTGAAAGGTGCAGAAGCGACAGTTTCCACTCGTAGCAACAAGTACATCGTAAGCTCCCTGCGTGAAGTTG
CGATGGGCAACGTGGGCTACCAGGACAGCCTGGATGCAAACGAAGCTATCCGTCAGATCGAAAAGGATCTGAACAAGTAA

Upstream 100 bases:

>100_bases
TCAACGACGTGTTTGAGAAATCCTATGGGGAATTTAAGAAAATCGTTGAAGATTTGCTAGCTTAGCTGTAATTTGGCCTG
ATCTATTTGCTGGAGGCGTA

Downstream 100 bases:

>100_bases
TCACATTAAAGGCGCAAGCCCCATTTATGTGAACCCAATGAAGGGAGGCGGAAGTCTCCCTTTTTGCGTTTTCTGGACGC
CTGTAATTCTTCGTTGGACA

Product: putative DNA-directed RNA polymerase, omega subunit

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MARVTVEDCLEKVPNRFALVLMVAKRAKQLLKGAEATVSTRSNKYIVSSLREVAMGNVGYQDSLDANEAIRQIEKDLNK

Sequences:

>Translated_79_residues
MARVTVEDCLEKVPNRFALVLMVAKRAKQLLKGAEATVSTRSNKYIVSSLREVAMGNVGYQDSLDANEAIRQIEKDLNK
>Mature_78_residues
ARVTVEDCLEKVPNRFALVLMVAKRAKQLLKGAEATVSTRSNKYIVSSLREVAMGNVGYQDSLDANEAIRQIEKDLNK

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_BDEBA (Q6MMQ7)

Other databases:

- EMBL:   BX842650
- RefSeq:   NP_968454.1
- GeneID:   2735454
- GenomeReviews:   BX842601_GR
- KEGG:   bba:Bd1569
- NMPDR:   fig|264462.1.peg.1424
- HOGENOM:   HBG742204
- OMA:   SESADNE
- BioCyc:   BBAC264462:BD1569-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 8796; Mature: 8665

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCLEKVPNRFALVLMVAKRAKQLLKGAEATVSTRSNKYIVSSLREVAMGNVGY
CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHCCCCC
QDSLDANEAIRQIEKDLNK
CCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
ARVTVEDCLEKVPNRFALVLMVAKRAKQLLKGAEATVSTRSNKYIVSSLREVAMGNVGY
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHCCCCC
QDSLDANEAIRQIEKDLNK
CCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA