| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is katA [H]
Identifier: 42522696
GI number: 42522696
Start: 1094604
End: 1096133
Strand: Direct
Name: katA [H]
Synonym: Bd1154
Alternate gene names: 42522696
Gene position: 1094604-1096133 (Clockwise)
Preceding gene: 42522692
Following gene: 42522697
Centisome position: 28.94
GC content: 51.7
Gene sequence:
>1530_bases ATGCTTAAGGGGTCGTTCAAAATTCAAGAAAGGATGCATGATATGGCTCAATCAAAGAAGGGTTTGACCACCAGTGCTGG TGCGCCGGTTTCAGACAATCAGAATTCGTTGACGGTGGGGCCTCGTGGGCCGTTGGTACTTCAGGATGTGGCGCTGATTG AAAAGCTCGCGCACCAAAACCGCGAGCGGGTGCCGGAAAGAACAGTGCATGCCAAGGGCTCCGGCGCTTTTGGCACGCTG ACGATCAACGGAGATATTTCCAAATACACCCGCGCAAAGTTCCTTCAGCCGGGAACAAAAACAGATCTGCTGATTCGTTT TTCAACGGTTGCCGGCGAAAGGGGCGCTGCAGATGCTGAACGCGACGTGCGGGGATTTGCGCTGAAGTTTTACACCGAAG AAGGCAACTTTGATTTGGTCGGCAACAACACGCCGGTTTTTTTCGTGCGTGATCCTTATAAATTTCCCGACTTCATTCAC ACACAAAAACGCGATCCGCGCACCAACTTACGAAGCCCCACGGCAATGTGGGACTTCTGGTCACTAAGTCCCGAGTCCTG CCACCAGGTGACAATTCTATTCTCTGACCGTGGTTTACCGGCGTCATATCGGCACATGCACGGATTTGGTTCGCACACCT ATTCCCTGATCAATAGCAAGGAGGACCGTCACTGGGTGAAGTTCCACTTCAAAACCCAGCAAGGGATCAAAAATCTGACC AATGATGAAGGGGCAGAGCTTGTGGGGCGCACGCGCGAAAGCCATCAGGAGGATCTGTACAATTCGATCGAAGAAAAAAG CTTTCCGAAATGGCGCATGTACGTGCAGATCATGAGCGAAGAGCAGGCCAAGAAAACCTGGTACAATCCCTTTGATCTTA CCAAAGTGTGGCCGCACGGAGAGTTCCCGATGATTGAGGTGGGCACCATGGAGCTCAACCGCAATCCGACAAACTATTTT GCTGAAATAGAGCAGGCGGCTTTCAACCCGAACAACATGGTACCGGGTGTTTCCTGGTCGCCGGACAAGATGCTGCAGTC GCGCACTTTTGCGTATGCTGATGCCCATCGCTATCGCATCGGCACTCACTACGAAATGCTTCCTGTGAACAAACCCAAAG TGGAAGTGAACCACTATCATCTGGACGGGGCCATGCGCCTGGATGTTCCTGAATACAATCATGCCTATTATGAACCGAAC TCTTTCGGGGGACCTGCTCAGCAGGAACAGTACCGGGAACCGCCATTGAAGCTGGATGATGCCACCATGGACCGGTTTGA TCATCATCAGGGCAATGATGATTACCGTCAGGCAGGGGATTTGTTCCGGTTGATGGACGCCGATAAAAAAAGGCAGCTGC TGGATAATATCGCCGAACACATGAAGCGCGGAAATGTGCCTGAAGAAATCGTACGCCGTCAGATCGAGGTCTTTATGAGG TGCGATCCTGCTTACGGTAGCGGCTTGGCCGAGCGCATGGGTGTAAAGGTTTATTCAGACAAATATGAAAGTGGCAGTGC CCATCATTAG
Upstream 100 bases:
>100_bases TGCAGGCAGGATATTTGTATTTCCACAGCCAGGGAGGACCCGCAGATTTCGTCTGACATAGCTGAAAAATACAACTCACG GCGGAATATTCTTTGTCCTT
Downstream 100 bases:
>100_bases GGCGGAGGATGTATGGCGACCTGGGAAGAATATAAAAAGACAATGGTGGTGGAACCGCTGATTTTTGAAGAGGCCCGCAA CGGCAACTGCGAGGCCTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 509; Mature: 509
Protein sequence:
>509_residues MLKGSFKIQERMHDMAQSKKGLTTSAGAPVSDNQNSLTVGPRGPLVLQDVALIEKLAHQNRERVPERTVHAKGSGAFGTL TINGDISKYTRAKFLQPGTKTDLLIRFSTVAGERGAADAERDVRGFALKFYTEEGNFDLVGNNTPVFFVRDPYKFPDFIH TQKRDPRTNLRSPTAMWDFWSLSPESCHQVTILFSDRGLPASYRHMHGFGSHTYSLINSKEDRHWVKFHFKTQQGIKNLT NDEGAELVGRTRESHQEDLYNSIEEKSFPKWRMYVQIMSEEQAKKTWYNPFDLTKVWPHGEFPMIEVGTMELNRNPTNYF AEIEQAAFNPNNMVPGVSWSPDKMLQSRTFAYADAHRYRIGTHYEMLPVNKPKVEVNHYHLDGAMRLDVPEYNHAYYEPN SFGGPAQQEQYREPPLKLDDATMDRFDHHQGNDDYRQAGDLFRLMDADKKRQLLDNIAEHMKRGNVPEEIVRRQIEVFMR CDPAYGSGLAERMGVKVYSDKYESGSAHH
Sequences:
>Translated_509_residues MLKGSFKIQERMHDMAQSKKGLTTSAGAPVSDNQNSLTVGPRGPLVLQDVALIEKLAHQNRERVPERTVHAKGSGAFGTL TINGDISKYTRAKFLQPGTKTDLLIRFSTVAGERGAADAERDVRGFALKFYTEEGNFDLVGNNTPVFFVRDPYKFPDFIH TQKRDPRTNLRSPTAMWDFWSLSPESCHQVTILFSDRGLPASYRHMHGFGSHTYSLINSKEDRHWVKFHFKTQQGIKNLT NDEGAELVGRTRESHQEDLYNSIEEKSFPKWRMYVQIMSEEQAKKTWYNPFDLTKVWPHGEFPMIEVGTMELNRNPTNYF AEIEQAAFNPNNMVPGVSWSPDKMLQSRTFAYADAHRYRIGTHYEMLPVNKPKVEVNHYHLDGAMRLDVPEYNHAYYEPN SFGGPAQQEQYREPPLKLDDATMDRFDHHQGNDDYRQAGDLFRLMDADKKRQLLDNIAEHMKRGNVPEEIVRRQIEVFMR CDPAYGSGLAERMGVKVYSDKYESGSAHH >Mature_509_residues MLKGSFKIQERMHDMAQSKKGLTTSAGAPVSDNQNSLTVGPRGPLVLQDVALIEKLAHQNRERVPERTVHAKGSGAFGTL TINGDISKYTRAKFLQPGTKTDLLIRFSTVAGERGAADAERDVRGFALKFYTEEGNFDLVGNNTPVFFVRDPYKFPDFIH TQKRDPRTNLRSPTAMWDFWSLSPESCHQVTILFSDRGLPASYRHMHGFGSHTYSLINSKEDRHWVKFHFKTQQGIKNLT NDEGAELVGRTRESHQEDLYNSIEEKSFPKWRMYVQIMSEEQAKKTWYNPFDLTKVWPHGEFPMIEVGTMELNRNPTNYF AEIEQAAFNPNNMVPGVSWSPDKMLQSRTFAYADAHRYRIGTHYEMLPVNKPKVEVNHYHLDGAMRLDVPEYNHAYYEPN SFGGPAQQEQYREPPLKLDDATMDRFDHHQGNDDYRQAGDLFRLMDADKKRQLLDNIAEHMKRGNVPEEIVRRQIEVFMR CDPAYGSGLAERMGVKVYSDKYESGSAHH
Specific function: Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide [H]
COG id: COG0753
COG function: function code P; Catalase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the catalase family [H]
Homologues:
Organism=Homo sapiens, GI4557014, Length=478, Percent_Identity=50, Blast_Score=488, Evalue=1e-138, Organism=Escherichia coli, GI48994891, Length=518, Percent_Identity=37.6447876447876, Blast_Score=341, Evalue=8e-95, Organism=Caenorhabditis elegans, GI71998444, Length=470, Percent_Identity=48.2978723404255, Blast_Score=456, Evalue=1e-128, Organism=Caenorhabditis elegans, GI25151141, Length=488, Percent_Identity=45.9016393442623, Blast_Score=445, Evalue=1e-125, Organism=Caenorhabditis elegans, GI25147792, Length=480, Percent_Identity=46.25, Blast_Score=444, Evalue=1e-125, Organism=Saccharomyces cerevisiae, GI6320462, Length=500, Percent_Identity=45.2, Blast_Score=396, Evalue=1e-111, Organism=Saccharomyces cerevisiae, GI6321525, Length=338, Percent_Identity=47.0414201183432, Blast_Score=320, Evalue=2e-88, Organism=Drosophila melanogaster, GI17981717, Length=484, Percent_Identity=49.3801652892562, Blast_Score=468, Evalue=1e-132, Organism=Drosophila melanogaster, GI19920968, Length=488, Percent_Identity=43.2377049180328, Blast_Score=425, Evalue=1e-119,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002226 - InterPro: IPR020835 - InterPro: IPR010582 - InterPro: IPR018028 - InterPro: IPR011614 [H]
Pfam domain/function: PF00199 Catalase; PF06628 Catalase-rel [H]
EC number: =1.11.1.6 [H]
Molecular weight: Translated: 58535; Mature: 58535
Theoretical pI: Translated: 7.28; Mature: 7.28
Prosite motif: PS00437 CATALASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKGSFKIQERMHDMAQSKKGLTTSAGAPVSDNQNSLTVGPRGPLVLQDVALIEKLAHQN CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH RERVPERTVHAKGSGAFGTLTINGDISKYTRAKFLQPGTKTDLLIRFSTVAGERGAADAE HHCCCCHHEECCCCCCEEEEEECCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCH RDVRGFALKFYTEEGNFDLVGNNTPVFFVRDPYKFPDFIHTQKRDPRTNLRSPTAMWDFW HCCCEEEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCCEEEEE SLSPESCHQVTILFSDRGLPASYRHMHGFGSHTYSLINSKEDRHWVKFHFKTQQGIKNLT CCCCCCCCEEEEEEECCCCCHHHHHHCCCCCHHHHHHCCCCCCEEEEEEEEHHHHHHHCC NDEGAELVGRTRESHQEDLYNSIEEKSFPKWRMYVQIMSEEQAKKTWYNPFDLTKVWPHG CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHCCCCCCCEEECCCC EFPMIEVGTMELNRNPTNYFAEIEQAAFNPNNMVPGVSWSPDKMLQSRTFAYADAHRYRI CCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHEEECCCEEEE GTHYEMLPVNKPKVEVNHYHLDGAMRLDVPEYNHAYYEPNSFGGPAQQEQYREPPLKLDD CCCEEEECCCCCEEEEEEEEECCEEEECCCCCCCCEECCCCCCCCCCHHHHCCCCCCCCC ATMDRFDHHQGNDDYRQAGDLFRLMDADKKRQLLDNIAEHMKRGNVPEEIVRRQIEVFMR HHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC CDPAYGSGLAERMGVKVYSDKYESGSAHH CCCCCCCCHHHHHCCEEEECCCCCCCCCC >Mature Secondary Structure MLKGSFKIQERMHDMAQSKKGLTTSAGAPVSDNQNSLTVGPRGPLVLQDVALIEKLAHQN CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH RERVPERTVHAKGSGAFGTLTINGDISKYTRAKFLQPGTKTDLLIRFSTVAGERGAADAE HHCCCCHHEECCCCCCEEEEEECCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCH RDVRGFALKFYTEEGNFDLVGNNTPVFFVRDPYKFPDFIHTQKRDPRTNLRSPTAMWDFW HCCCEEEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCCEEEEE SLSPESCHQVTILFSDRGLPASYRHMHGFGSHTYSLINSKEDRHWVKFHFKTQQGIKNLT CCCCCCCCEEEEEEECCCCCHHHHHHCCCCCHHHHHHCCCCCCEEEEEEEEHHHHHHHCC NDEGAELVGRTRESHQEDLYNSIEEKSFPKWRMYVQIMSEEQAKKTWYNPFDLTKVWPHG CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHCCCCCCCEEECCCC EFPMIEVGTMELNRNPTNYFAEIEQAAFNPNNMVPGVSWSPDKMLQSRTFAYADAHRYRI CCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHEEECCCEEEE GTHYEMLPVNKPKVEVNHYHLDGAMRLDVPEYNHAYYEPNSFGGPAQQEQYREPPLKLDD CCCEEEECCCCCEEEEEEEEECCEEEECCCCCCCCEECCCCCCCCCCHHHHCCCCCCCCC ATMDRFDHHQGNDDYRQAGDLFRLMDADKKRQLLDNIAEHMKRGNVPEEIVRRQIEVFMR HHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC CDPAYGSGLAERMGVKVYSDKYESGSAHH CCCCCCCCHHHHHCCEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8955300; 11481430 [H]