| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is ppdK [H]
Identifier: 42522692
GI number: 42522692
Start: 1090180
End: 1092891
Strand: Direct
Name: ppdK [H]
Synonym: Bd1150
Alternate gene names: 42522692
Gene position: 1090180-1092891 (Clockwise)
Preceding gene: 42522689
Following gene: 42522696
Centisome position: 28.82
GC content: 53.39
Gene sequence:
>2712_bases ATGCACCAGAATGTAAACTCTGACAAACAAGCATCCAAAACAGCCGTTCCACAGAAGTTCGTCTACTTCTTTGCTGCCGG GGATTCCGAAGGCAATGCAGGCATGAAGAACATCCTGGGTGGTAAAGGCGCCAACCTGGCCGAGATGACCTCTTTGGGCA TTCCGGTTCCTCCGGGCTTCACGATCTCCACTGAGATCTGCGCTCACTTCTATGAAGCCGGTGGCAAGCTGCCTGACTGG GTTCGCCCGGCGGTGCAGGAGTCCATGAACAAAGTGGAATCCAAGATTGGCAAAAAATTCGGCGATGTGAACAACCCACT TTTGGTTTCTGTTCGTTCCGGGGCTCGCGCTTCCATGCCAGGCATGATGGATACGATCCTGAATCTGGGCTTGAATGATC AGACTGTGGAAGGCTTGGCGAAGTCCTCTAACAATCCGCGCTTTGCGTGGGACTCTTACCGTCGTTTCATTCAGATGTAT TCTGATGTGGTGATGGGGATGAACTCTTCACTTCTGGAAGTGACTCTGGAAGACATGAAAGAGGAAAAACACTACAAACT TGACACCGAAATGACGGTCGATGACCTGAAGCTTCTGGTGAAAAAATTCAAAGACCTGGTTCATCAGATGACCGGTCAGT CCTTCCCGGCAGATCCTTGGGAGCAGCTGTGGGGCGCGATTTCCGCGGTCTTCCATTCCTGGAACACGCCGCGTGCGATC ACTTACCGTGAATTGCATTCGATCCCGGCAGCCTGGGGTACAGCGGTGAACGTTCAGTCCATGGTCTTTGGGAACATGGG GGATGACTCTGCAACGGGTGTGGCGTTCACGCGCAATCCATCCACAGGTGAAAAAGCCTTCTACGGCGAATTCCTGATCA ATGCTCAGGGCGAGGACGTGGTGGCGGGCATCCGCACCCCGCAACCGATCACCAAGATTGCCGCAGCCGCGGCGGGTGTC ATGTCTTTGGAAGAAGCTCTTCCTCAGGCCTACGGTCAGTTGGTTGAAATCTATAAAAAGCTGGAAGGTCACTACCGCGA CATGCAGGACATCGAGTTCACGATCGAACGCGGTGTTTTGTGGATGCTGCAAACCCGTAACGGCAAAAGAACCGCAGCGG CGGCTTTGAAAATCGCCTGTGACATGATCGATGAAAAGTTGATCACGCAGGACGAAGCGATTCTGCGTCTGGATCCTTCC TCATTGGATCAGCTTCTGCATCCGACTTTGGATCCAAAAGCGGCAAAGACCACTTTGGCCAAAGGTTTGCCTGCGTCTCC GGGCGGGGTGAACGGCCAGATCGTCTTCACTTCTGAAGAAGCGGTCGAGTGGAGAGAGCAAGGCAAGAAAGTCATCCTGG TGCGCATTGAAACCTCTCCGGAAGACATTGCCGGCATGGTGGCAGCACAAGGTATCCTGACAACTCGTGGTGGTATGACA TCACACGCGGCCGTTGTGGCGCGTGGTATGGGTAAATGCTGTGTGGCGGGTTGTGGTGACATCGAAGTCGACTACCGCAA TGAAACCATGAAAGTGAAAGGGTACGTTCTGAAAAAGGGCGACGTGATCACTTTGGACGGCTCCACGGGTGAAGTTTATC TGGGCGAAGTTAAAACCATCGAACCGAAACTGGATGGCAACTTCGAGCGCATCATGAAAATCGCTGATGGCATTCGCAGA CTGAAAGTTCGCACCAATGCCGACACGCCAAAAGACGCGCAAACGGCGCGCAACTTCGGTGCAGAAGGCATCGGCCTTTG CCGTACTGAGCACATGTTCTTCGGCGCAGACCGCATCGATGCGGTTCGTGAGATGATCATTGCTGACAACAAAATGGACC GTGAAAAAGCATTGGCGAAACTTTTGCCAATGCAGCGTGAAGACTTCTATCAGCTGTTCAAAATCATGGACGGCCTGCCA GTGACGATCCGTTTGTTGGATCCACCTCTGCATGAATTCGTTCCGCACACGGATGAAGAAACCAAGGAATTGGCAAAACG TCTGAACACGGACTATGAGCGCCTGCGCTCTAAAGTAAAATCCCTGCATGAATTCAATCCGATGCTGGGTCACCGTGGCT GTCGTCTGGCGATCACTTATCCTGAAATTTACCAGATGCAGGTTCGTGCAATCGCGGAAGCTGCGGCTCAGTTGATGGCT GAAGGCAAAACCTTGGCGCCGGAAATCATGATTCCGCTGGTGGCGACAGACAAGGAACTGGACACTTTGCGCGGTCAGGC CGTGGCGGAAGTGAACAAGGTTCAATCTGAAAAGAACGTGAAGTTTGAATACACAGTGGGCACGATGATTGAGCTTCCAA GAGCTGCGATCACGGCGGACGCCATTGCAGAACACGCGGACTTCTTCAGTTTCGGTACGAACGATTTGACTCAGACGACT TTGGGCTTGTCCCGTGATGACTCCGGTCGCTTCCTGGGCACTTACGTGTCTCATGGAATTCTGCCGAAAGATCCGTTCAT GTCCATCGATCAGGTGGGTGTGGGTTCTTTGGTGAAAATGGGTGTGGACCTGGGCCGTCGCACGAAGCCTGACCTGAAAG TCGGCGTGTGCGGTGAGCACGGTGGGGACCCTGAATCCATCGAGTTCTTCCACAAGGTGGGGCTGGATTACGTGTCCTGC TCTCCGTTCCGTGTGCCTATCGCCAGACTGGCGGCAGCCCGCGCAGCCCTGATCGGTAAGAAAATCCACTAA
Upstream 100 bases:
>100_bases GCATACTGGGCCCCAAAATTTCATTGATATTAAGGGCTTAGGGATGTTCTATGTCTACTAGATAGGACAACTAATTTTAC TTTTCCGGTGGGGGAGACTA
Downstream 100 bases:
>100_bases GCAAAAAACGAAAAAGCCCTCTGATGAAGAGGGCTTTTTTTGTTTCACCGGTTCACTTTGTAAAATAGGTGACCAGAATT CCTAACACCATGGTGGTGAA
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 903; Mature: 903
Protein sequence:
>903_residues MHQNVNSDKQASKTAVPQKFVYFFAAGDSEGNAGMKNILGGKGANLAEMTSLGIPVPPGFTISTEICAHFYEAGGKLPDW VRPAVQESMNKVESKIGKKFGDVNNPLLVSVRSGARASMPGMMDTILNLGLNDQTVEGLAKSSNNPRFAWDSYRRFIQMY SDVVMGMNSSLLEVTLEDMKEEKHYKLDTEMTVDDLKLLVKKFKDLVHQMTGQSFPADPWEQLWGAISAVFHSWNTPRAI TYRELHSIPAAWGTAVNVQSMVFGNMGDDSATGVAFTRNPSTGEKAFYGEFLINAQGEDVVAGIRTPQPITKIAAAAAGV MSLEEALPQAYGQLVEIYKKLEGHYRDMQDIEFTIERGVLWMLQTRNGKRTAAAALKIACDMIDEKLITQDEAILRLDPS SLDQLLHPTLDPKAAKTTLAKGLPASPGGVNGQIVFTSEEAVEWREQGKKVILVRIETSPEDIAGMVAAQGILTTRGGMT SHAAVVARGMGKCCVAGCGDIEVDYRNETMKVKGYVLKKGDVITLDGSTGEVYLGEVKTIEPKLDGNFERIMKIADGIRR LKVRTNADTPKDAQTARNFGAEGIGLCRTEHMFFGADRIDAVREMIIADNKMDREKALAKLLPMQREDFYQLFKIMDGLP VTIRLLDPPLHEFVPHTDEETKELAKRLNTDYERLRSKVKSLHEFNPMLGHRGCRLAITYPEIYQMQVRAIAEAAAQLMA EGKTLAPEIMIPLVATDKELDTLRGQAVAEVNKVQSEKNVKFEYTVGTMIELPRAAITADAIAEHADFFSFGTNDLTQTT LGLSRDDSGRFLGTYVSHGILPKDPFMSIDQVGVGSLVKMGVDLGRRTKPDLKVGVCGEHGGDPESIEFFHKVGLDYVSC SPFRVPIARLAAARAALIGKKIH
Sequences:
>Translated_903_residues MHQNVNSDKQASKTAVPQKFVYFFAAGDSEGNAGMKNILGGKGANLAEMTSLGIPVPPGFTISTEICAHFYEAGGKLPDW VRPAVQESMNKVESKIGKKFGDVNNPLLVSVRSGARASMPGMMDTILNLGLNDQTVEGLAKSSNNPRFAWDSYRRFIQMY SDVVMGMNSSLLEVTLEDMKEEKHYKLDTEMTVDDLKLLVKKFKDLVHQMTGQSFPADPWEQLWGAISAVFHSWNTPRAI TYRELHSIPAAWGTAVNVQSMVFGNMGDDSATGVAFTRNPSTGEKAFYGEFLINAQGEDVVAGIRTPQPITKIAAAAAGV MSLEEALPQAYGQLVEIYKKLEGHYRDMQDIEFTIERGVLWMLQTRNGKRTAAAALKIACDMIDEKLITQDEAILRLDPS SLDQLLHPTLDPKAAKTTLAKGLPASPGGVNGQIVFTSEEAVEWREQGKKVILVRIETSPEDIAGMVAAQGILTTRGGMT SHAAVVARGMGKCCVAGCGDIEVDYRNETMKVKGYVLKKGDVITLDGSTGEVYLGEVKTIEPKLDGNFERIMKIADGIRR LKVRTNADTPKDAQTARNFGAEGIGLCRTEHMFFGADRIDAVREMIIADNKMDREKALAKLLPMQREDFYQLFKIMDGLP VTIRLLDPPLHEFVPHTDEETKELAKRLNTDYERLRSKVKSLHEFNPMLGHRGCRLAITYPEIYQMQVRAIAEAAAQLMA EGKTLAPEIMIPLVATDKELDTLRGQAVAEVNKVQSEKNVKFEYTVGTMIELPRAAITADAIAEHADFFSFGTNDLTQTT LGLSRDDSGRFLGTYVSHGILPKDPFMSIDQVGVGSLVKMGVDLGRRTKPDLKVGVCGEHGGDPESIEFFHKVGLDYVSC SPFRVPIARLAAARAALIGKKIH >Mature_903_residues MHQNVNSDKQASKTAVPQKFVYFFAAGDSEGNAGMKNILGGKGANLAEMTSLGIPVPPGFTISTEICAHFYEAGGKLPDW VRPAVQESMNKVESKIGKKFGDVNNPLLVSVRSGARASMPGMMDTILNLGLNDQTVEGLAKSSNNPRFAWDSYRRFIQMY SDVVMGMNSSLLEVTLEDMKEEKHYKLDTEMTVDDLKLLVKKFKDLVHQMTGQSFPADPWEQLWGAISAVFHSWNTPRAI TYRELHSIPAAWGTAVNVQSMVFGNMGDDSATGVAFTRNPSTGEKAFYGEFLINAQGEDVVAGIRTPQPITKIAAAAAGV MSLEEALPQAYGQLVEIYKKLEGHYRDMQDIEFTIERGVLWMLQTRNGKRTAAAALKIACDMIDEKLITQDEAILRLDPS SLDQLLHPTLDPKAAKTTLAKGLPASPGGVNGQIVFTSEEAVEWREQGKKVILVRIETSPEDIAGMVAAQGILTTRGGMT SHAAVVARGMGKCCVAGCGDIEVDYRNETMKVKGYVLKKGDVITLDGSTGEVYLGEVKTIEPKLDGNFERIMKIADGIRR LKVRTNADTPKDAQTARNFGAEGIGLCRTEHMFFGADRIDAVREMIIADNKMDREKALAKLLPMQREDFYQLFKIMDGLP VTIRLLDPPLHEFVPHTDEETKELAKRLNTDYERLRSKVKSLHEFNPMLGHRGCRLAITYPEIYQMQVRAIAEAAAQLMA EGKTLAPEIMIPLVATDKELDTLRGQAVAEVNKVQSEKNVKFEYTVGTMIELPRAAITADAIAEHADFFSFGTNDLTQTT LGLSRDDSGRFLGTYVSHGILPKDPFMSIDQVGVGSLVKMGVDLGRRTKPDLKVGVCGEHGGDPESIEFFHKVGLDYVSC SPFRVPIARLAAARAALIGKKIH
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1788756, Length=460, Percent_Identity=26.7391304347826, Blast_Score=124, Evalue=3e-29, Organism=Escherichia coli, GI48994992, Length=430, Percent_Identity=24.4186046511628, Blast_Score=97, Evalue=6e-21, Organism=Escherichia coli, GI1787994, Length=444, Percent_Identity=27.7027027027027, Blast_Score=91, Evalue=4e-19, Organism=Escherichia coli, GI1789193, Length=460, Percent_Identity=24.5652173913043, Blast_Score=91, Evalue=4e-19, Organism=Escherichia coli, GI1788726, Length=467, Percent_Identity=23.7687366167024, Blast_Score=82, Evalue=1e-16,
Paralogues:
None
Copy number: 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2659 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 4,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 99175; Mature: 99175
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHQNVNSDKQASKTAVPQKFVYFFAAGDSEGNAGMKNILGGKGANLAEMTSLGIPVPPGF CCCCCCCCHHHHHHCCCCEEEEEEEECCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCC TISTEICAHFYEAGGKLPDWVRPAVQESMNKVESKIGKKFGDVNNPLLVSVRSGARASMP EEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC GMMDTILNLGLNDQTVEGLAKSSNNPRFAWDSYRRFIQMYSDVVMGMNSSLLEVTLEDMK HHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH EEKHYKLDTEMTVDDLKLLVKKFKDLVHQMTGQSFPADPWEQLWGAISAVFHSWNTPRAI HHHCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEE TYRELHSIPAAWGTAVNVQSMVFGNMGDDSATGVAFTRNPSTGEKAFYGEFLINAQGEDV EHHHHHCCCHHHCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCE VAGIRTPQPITKIAAAAAGVMSLEEALPQAYGQLVEIYKKLEGHYRDMQDIEFTIERGVL EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEE WMLQTRNGKRTAAAALKIACDMIDEKLITQDEAILRLDPSSLDQLLHPTLDPKAAKTTLA EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCHHHHHHHH KGLPASPGGVNGQIVFTSEEAVEWREQGKKVILVRIETSPEDIAGMVAAQGILTTRGGMT CCCCCCCCCCCCEEEEECHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHCCHHEECCCCC SHAAVVARGMGKCCVAGCGDIEVDYRNETMKVKGYVLKKGDVITLDGSTGEVYLGEVKTI HHHHHHHHCCCCCEECCCCCEEEECCCCEEEEEEEEEECCCEEEEECCCCCEEECCEEEE EPKLDGNFERIMKIADGIRRLKVRTNADTPKDAQTARNFGAEGIGLCRTEHMFFGADRID CCCCCCCHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHCCCCCCCEEEECCCEECCHHHH AVREMIIADNKMDREKALAKLLPMQREDFYQLFKIMDGLPVTIRLLDPPLHEFVPHTDEE HHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCHH TKELAKRLNTDYERLRSKVKSLHEFNPMLGHRGCRLAITYPEIYQMQVRAIAEAAAQLMA HHHHHHHHCCHHHHHHHHHHHHHHCCHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH EGKTLAPEIMIPLVATDKELDTLRGQAVAEVNKVQSEKNVKFEYTVGTMIELPRAAITAD CCCCCCCHHEEEEEECCCHHHHHCCHHHHHHHHHHCCCCCEEEEECCHHHHCCHHHHHHH AIAEHADFFSFGTNDLTQTTLGLSRDDSGRFLGTYVSHGILPKDPFMSIDQVGVGSLVKM HHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEHHHHHCCCCCCCCCCCHHHCCHHHHHHH GVDLGRRTKPDLKVGVCGEHGGDPESIEFFHKVGLDYVSCSPFRVPIARLAAARAALIGK HHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHC KIH CCC >Mature Secondary Structure MHQNVNSDKQASKTAVPQKFVYFFAAGDSEGNAGMKNILGGKGANLAEMTSLGIPVPPGF CCCCCCCCHHHHHHCCCCEEEEEEEECCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCC TISTEICAHFYEAGGKLPDWVRPAVQESMNKVESKIGKKFGDVNNPLLVSVRSGARASMP EEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC GMMDTILNLGLNDQTVEGLAKSSNNPRFAWDSYRRFIQMYSDVVMGMNSSLLEVTLEDMK HHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH EEKHYKLDTEMTVDDLKLLVKKFKDLVHQMTGQSFPADPWEQLWGAISAVFHSWNTPRAI HHHCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEE TYRELHSIPAAWGTAVNVQSMVFGNMGDDSATGVAFTRNPSTGEKAFYGEFLINAQGEDV EHHHHHCCCHHHCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCE VAGIRTPQPITKIAAAAAGVMSLEEALPQAYGQLVEIYKKLEGHYRDMQDIEFTIERGVL EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEE WMLQTRNGKRTAAAALKIACDMIDEKLITQDEAILRLDPSSLDQLLHPTLDPKAAKTTLA EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCHHHHHHHH KGLPASPGGVNGQIVFTSEEAVEWREQGKKVILVRIETSPEDIAGMVAAQGILTTRGGMT CCCCCCCCCCCCEEEEECHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHCCHHEECCCCC SHAAVVARGMGKCCVAGCGDIEVDYRNETMKVKGYVLKKGDVITLDGSTGEVYLGEVKTI HHHHHHHHCCCCCEECCCCCEEEECCCCEEEEEEEEEECCCEEEEECCCCCEEECCEEEE EPKLDGNFERIMKIADGIRRLKVRTNADTPKDAQTARNFGAEGIGLCRTEHMFFGADRID CCCCCCCHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHCCCCCCCEEEECCCEECCHHHH AVREMIIADNKMDREKALAKLLPMQREDFYQLFKIMDGLPVTIRLLDPPLHEFVPHTDEE HHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCHH TKELAKRLNTDYERLRSKVKSLHEFNPMLGHRGCRLAITYPEIYQMQVRAIAEAAAQLMA HHHHHHHHCCHHHHHHHHHHHHHHCCHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH EGKTLAPEIMIPLVATDKELDTLRGQAVAEVNKVQSEKNVKFEYTVGTMIELPRAAITAD CCCCCCCHHEEEEEECCCHHHHHCCHHHHHHHHHHCCCCCEEEEECCHHHHCCHHHHHHH AIAEHADFFSFGTNDLTQTTLGLSRDDSGRFLGTYVSHGILPKDPFMSIDQVGVGSLVKM HHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEHHHHHCCCCCCCCCCCHHHCCHHHHHHH GVDLGRRTKPDLKVGVCGEHGGDPESIEFFHKVGLDYVSCSPFRVPIARLAAARAALIGK HHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHC KIH CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430; 9168612 [H]