| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is 42522602
Identifier: 42522602
GI number: 42522602
Start: 990129
End: 991673
Strand: Direct
Name: 42522602
Synonym: Bd1045
Alternate gene names: NA
Gene position: 990129-991673 (Clockwise)
Preceding gene: 42522601
Following gene: 42522603
Centisome position: 26.17
GC content: 52.1
Gene sequence:
>1545_bases ATGAAACGTCGGTTGATTGCCACTGTGCTTGCGACACTTTCCATGATGCAAAATGCTCATGCAGATATTATTTCGGACCT GCCGGGCTTTGATGATGTCGGCGGCGGCATGGAATTCCCGCAGCCACCACAAGAGCAAGGGGCAGATACAACGACTACGA CGACGTCTTCAACTGCCACGTCCACGGTGCAGCGCCAGTACACGGGCGACGTTCAGGTGCGCGAAGTTTCCCGTAAGAAA GACGGTGAGATCCGTAAGATCACTCTGGCAGAGGCTTTGACCTTGCAAAATATGGAAATCAAAGCCCGTAATGCCCGCGT GAAAATTCACGAAGTGACTTTGATTCTGGCAAATGGCCAGCGCTCGGATGTTCGCGAGTACCGTAACGCCGCTGTTTTGG AAATCAACGCCACGGCGTCTTCCGGCAATCTGAATTTGAATCAAAAAGTGGCGGCTATCGAAATCCGCGCGGAATCCTAC GGTGGTATCAGTGAATTGAGCGTGAAAGCGGTTTCTGATCTGGGTGTGCCACGTATGACGGCGCAGGGGCCGGCAGTCGC GCAACCAGTGACTCCGACCGCTCCTCCGGCTCCGGGCCGCACTGAAGAATCCGCGACTGTTCGTGTGGGCGATAAAGTTC TTTTTGATAATGGCAGCAGCTATGTCGGCACAGTGAAAGAGATCTTCATGTCCGGCAAAGCCCGCGTGAGCTTCCCGGGG TACAGCCAGGATTCCATTTTGGATTTGAAGGACCTTGCACGCTCGGTGAACTGCCAGGCCACCCAGTGTGTCGGTGACCG CGTTCTGTTCGACAATGGAAATCAGTATGTTGGCATGATCAGCATGGTGTTTGCCAACGGTGTTCGTCAGGTGAAGTTCC CAGGCTACAGCGAGCCATCTTTCATTAAAGCACAAAAGCTGACTAAGTCCGCGCAGTGTGCAGGCTCTGTGTGTGTGGGT GAAAGAATCATCTTTAGCAACGGCAGCGATTATTATGCCGGCACTGTGCGCGAGGCATTCGTAAACGGGATGGTTTCCAT CAAGTTTGATGGTTATAACGAAATTAGCTTCCTGGATCACAAGAAGTTGATGAAAGGGCAGGCCTGCGCCAGCGATATCT GCGTGGATACGCGAGTCATGTTCGATAATGGCAGCGGAAATTATCTGGGCCGTGTCACTGAAATTTATGCTGATGGCACC GCGAAAATCAAATTTGAAGGTTACAGTGAATACAGCTTCATCAAGACTTCGCGCCTTGTAAAGGTGGTGTCTTCCGTGAA GGGTTACAGCAGCGGCACTCGCGTGCTGTTCAATAACGGTTCCGGCTACTATGTCGGTACCGTGCGTGAGGTGTTCGCTG ATGGCACAGCCTCCATCAAATTTGAAGGTTACAGTGACCTGAGCTTTATCAAAGTGGATCGCTTGGGACGTCAGGCGGAT TGTCATAAAAACATCTGCACCGGAAACCGGGTGATCCTTAACGGTCAGTACTCGGGGACTGTTCGTGCGGTCTATAGCAA TGGGTACGCTCTGGTGAAATACTGA
Upstream 100 bases:
>100_bases TTGACCAGCTTTATATCAAATTTATCTGTGTTTGAGGCCGCCCGCAGGCGGCACGAACCTTGGATTACTGCCTGCGGAAC CAAAACAGTATGGAGTCTTT
Downstream 100 bases:
>100_bases CGGATACACGGACCTGACCTATACAGACGTGTCCAAACTTTCCAGATAGTGTTCCTTGAAAGCTGAAACTTAGAAATTAG AAATTTAAAATATCAATATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 514; Mature: 514
Protein sequence:
>514_residues MKRRLIATVLATLSMMQNAHADIISDLPGFDDVGGGMEFPQPPQEQGADTTTTTTSSTATSTVQRQYTGDVQVREVSRKK DGEIRKITLAEALTLQNMEIKARNARVKIHEVTLILANGQRSDVREYRNAAVLEINATASSGNLNLNQKVAAIEIRAESY GGISELSVKAVSDLGVPRMTAQGPAVAQPVTPTAPPAPGRTEESATVRVGDKVLFDNGSSYVGTVKEIFMSGKARVSFPG YSQDSILDLKDLARSVNCQATQCVGDRVLFDNGNQYVGMISMVFANGVRQVKFPGYSEPSFIKAQKLTKSAQCAGSVCVG ERIIFSNGSDYYAGTVREAFVNGMVSIKFDGYNEISFLDHKKLMKGQACASDICVDTRVMFDNGSGNYLGRVTEIYADGT AKIKFEGYSEYSFIKTSRLVKVVSSVKGYSSGTRVLFNNGSGYYVGTVREVFADGTASIKFEGYSDLSFIKVDRLGRQAD CHKNICTGNRVILNGQYSGTVRAVYSNGYALVKY
Sequences:
>Translated_514_residues MKRRLIATVLATLSMMQNAHADIISDLPGFDDVGGGMEFPQPPQEQGADTTTTTTSSTATSTVQRQYTGDVQVREVSRKK DGEIRKITLAEALTLQNMEIKARNARVKIHEVTLILANGQRSDVREYRNAAVLEINATASSGNLNLNQKVAAIEIRAESY GGISELSVKAVSDLGVPRMTAQGPAVAQPVTPTAPPAPGRTEESATVRVGDKVLFDNGSSYVGTVKEIFMSGKARVSFPG YSQDSILDLKDLARSVNCQATQCVGDRVLFDNGNQYVGMISMVFANGVRQVKFPGYSEPSFIKAQKLTKSAQCAGSVCVG ERIIFSNGSDYYAGTVREAFVNGMVSIKFDGYNEISFLDHKKLMKGQACASDICVDTRVMFDNGSGNYLGRVTEIYADGT AKIKFEGYSEYSFIKTSRLVKVVSSVKGYSSGTRVLFNNGSGYYVGTVREVFADGTASIKFEGYSDLSFIKVDRLGRQAD CHKNICTGNRVILNGQYSGTVRAVYSNGYALVKY >Mature_514_residues MKRRLIATVLATLSMMQNAHADIISDLPGFDDVGGGMEFPQPPQEQGADTTTTTTSSTATSTVQRQYTGDVQVREVSRKK DGEIRKITLAEALTLQNMEIKARNARVKIHEVTLILANGQRSDVREYRNAAVLEINATASSGNLNLNQKVAAIEIRAESY GGISELSVKAVSDLGVPRMTAQGPAVAQPVTPTAPPAPGRTEESATVRVGDKVLFDNGSSYVGTVKEIFMSGKARVSFPG YSQDSILDLKDLARSVNCQATQCVGDRVLFDNGNQYVGMISMVFANGVRQVKFPGYSEPSFIKAQKLTKSAQCAGSVCVG ERIIFSNGSDYYAGTVREAFVNGMVSIKFDGYNEISFLDHKKLMKGQACASDICVDTRVMFDNGSGNYLGRVTEIYADGT AKIKFEGYSEYSFIKTSRLVKVVSSVKGYSSGTRVLFNNGSGYYVGTVREVFADGTASIKFEGYSDLSFIKVDRLGRQAD CHKNICTGNRVILNGQYSGTVRAVYSNGYALVKY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55698; Mature: 55698
Theoretical pI: Translated: 8.89; Mature: 8.89
Prosite motif: PS00131 CARBOXYPEPT_SER_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRRLIATVLATLSMMQNAHADIISDLPGFDDVGGGMEFPQPPQEQGADTTTTTTSSTAT CCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCEECCCCHHH STVQRQYTGDVQVREVSRKKDGEIRKITLAEALTLQNMEIKARNARVKIHEVTLILANGQ HHHHHHCCCCEEEEEHHCCCCCCEEEEEEHHHHEECCEEEEECCCEEEEEEEEEEEECCC RSDVREYRNAAVLEINATASSGNLNLNQKVAAIEIRAESYGGISELSVKAVSDLGVPRMT HHHHHHHCCEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCC AQGPAVAQPVTPTAPPAPGRTEESATVRVGDKVLFDNGSSYVGTVKEIFMSGKARVSFPG CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHHHHHCCCCEEECCC YSQDSILDLKDLARSVNCQATQCVGDRVLFDNGNQYVGMISMVFANGVRQVKFPGYSEPS CCCCCCCCHHHHHHHCCCCEEECCCCEEEEECCCCEEHHHHHHHHCCCEEEECCCCCCCC FIKAQKLTKSAQCAGSVCVGERIIFSNGSDYYAGTVREAFVNGMVSIKFDGYNEISFLDH HHHHHHHHHHHHHCCCEEECCEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCHHHH KKLMKGQACASDICVDTRVMFDNGSGNYLGRVTEIYADGTAKIKFEGYSEYSFIKTSRLV HHHHCCCCCHHHCEEEEEEEEECCCCCEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHH KVVSSVKGYSSGTRVLFNNGSGYYVGTVREVFADGTASIKFEGYSDLSFIKVDRLGRQAD HHHHHHCCCCCCCEEEEECCCEEEEEEHHHHHCCCCEEEEECCCCCCEEEEEHHCCCCCC CHKNICTGNRVILNGQYSGTVRAVYSNGYALVKY CCCCCCCCCEEEEECCCCCEEEEEEECCEEEEEC >Mature Secondary Structure MKRRLIATVLATLSMMQNAHADIISDLPGFDDVGGGMEFPQPPQEQGADTTTTTTSSTAT CCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCEECCCCHHH STVQRQYTGDVQVREVSRKKDGEIRKITLAEALTLQNMEIKARNARVKIHEVTLILANGQ HHHHHHCCCCEEEEEHHCCCCCCEEEEEEHHHHEECCEEEEECCCEEEEEEEEEEEECCC RSDVREYRNAAVLEINATASSGNLNLNQKVAAIEIRAESYGGISELSVKAVSDLGVPRMT HHHHHHHCCEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCC AQGPAVAQPVTPTAPPAPGRTEESATVRVGDKVLFDNGSSYVGTVKEIFMSGKARVSFPG CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHHHHHCCCCEEECCC YSQDSILDLKDLARSVNCQATQCVGDRVLFDNGNQYVGMISMVFANGVRQVKFPGYSEPS CCCCCCCCHHHHHHHCCCCEEECCCCEEEEECCCCEEHHHHHHHHCCCEEEECCCCCCCC FIKAQKLTKSAQCAGSVCVGERIIFSNGSDYYAGTVREAFVNGMVSIKFDGYNEISFLDH HHHHHHHHHHHHHCCCEEECCEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCHHHH KKLMKGQACASDICVDTRVMFDNGSGNYLGRVTEIYADGTAKIKFEGYSEYSFIKTSRLV HHHHCCCCCHHHCEEEEEEEEECCCCCEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHH KVVSSVKGYSSGTRVLFNNGSGYYVGTVREVFADGTASIKFEGYSDLSFIKVDRLGRQAD HHHHHHCCCCCCCEEEEECCCEEEEEEHHHHHCCCCEEEEECCCCCCEEEEEHHCCCCCC CHKNICTGNRVILNGQYSGTVRAVYSNGYALVKY CCCCCCCCCEEEEECCCCCEEEEEEECCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA