Definition Bdellovibrio bacteriovorus HD100, complete genome.
Accession NC_005363
Length 3,782,950

Click here to switch to the map view.

The map label for this gene is 42522603

Identifier: 42522603

GI number: 42522603

Start: 991793

End: 993151

Strand: Direct

Name: 42522603

Synonym: Bd1046

Alternate gene names: NA

Gene position: 991793-993151 (Clockwise)

Preceding gene: 42522602

Following gene: 42522604

Centisome position: 26.22

GC content: 52.1

Gene sequence:

>1359_bases
ATGAAAAAGAAACTGATTGTTGGAATGTTGGCCGCTGCAGCGGTGATGCAGGCGACAAGTCCTGCGATGGCTGAATACAG
TGAAAGACGCCCGGCTCCATATCCAGAGGCTCCGCCGATGCCACCACCTCCTCCAGGTCAGTATCTTCAGGAAGGCTCTT
TGGAAATCCAGAGTGTGACCCGTCGTACAGGCGGGGAGTGGTATCGCATCAGTCTGCGTCGCGCGGCTTCTTTGGAGCGT
ATAGAAGTGGCGGCTTTGGCAATGCGTTTGAAAATTCATGACGCCAGTGTGATCACTGAAGATGGCCGTCGTGTATCCAT
TCGTGAGTTTCGCAACACGGCGGTGTTCGGTGTGGGTTCCCGCGCGGTCTCTGAAAATCTGAACCTGCGTTCTCGTATTG
TGGCTATCGATATTCTGGCTGAATCCTATGGTGGCTATGCGGATGTGCGCGTGACGGCTCTTTCCACGGACAGCCGTCCG
CAACTGGTTCTGGGGAATCTGCCGCAACAGCCGGGTGGCAACGGCGGTCACAATGGTGGGCACAATGGCGGTGGCAATAA
TGGTGGTCATGGTGGTGGCAACTATGCGTGCTCTCGTCGTGCCGATGTGACTCGCAGCCTGGAGCAACAGGATGTGGAAA
TGGATGCTTGGTCGCGCCGAAAGAATGCAGCCAGCTACAATTCCGTGGAATACAACATGGCCGACCGGGAGCTGAAAGCA
ACAGCGGCCAGAATGGTTCAGATCGCAAAAAGCAATGAAGCCAAAGAAACCAAGATGGAAAAACTGGAGGTTTTGGGCGC
CCTTTACTTCCAGAAGATGAATCAGCAGTCGTACAACTCAACTCAGTACAATGCCTACTCTGAGGTGGGAAGAGCGATCT
TCAGCGCCATGGAAAACGGTCTTAAACTGGCGTTGGATTGTGACATCAGAACCACGGTTCAGTTGCTGGCTCGCGGGGAT
GAGTATGTAGGGAAAATGAACACTTATTCCTACAACTCGGTTCCGTACAACGCCTACAGCCGGATGGCTCAGCAGGTATA
TGCTGCGGCCCCGAACTTCTATGAGCAGGAAGTTCGTCGCTTGGACAAGACCTTCATGAAGATCGATGAAGAGCTGGATG
AAAACCATAGAAAGATGAATTCCTATTCATACAATTCTGTAGGGTATAATTCTTACGCCGCCATTATCCGTAAAGGTGTC
GAATTGTCTCAAGGAAGCCTGCGCCGTCTGGTGCCTCATATGGGCAGCCTGCAGCGCTTTGATCTGGTGAAGCACTTTGA
CGGTCGCAAGAATGCGTACTCTTACAATTCGCTTCTTTATAATCACTTTGCTGCGATGAAAGAGATCGCGGCTCGTTAA

Upstream 100 bases:

>100_bases
TATACAGACGTGTCCAAACTTTCCAGATAGTGTTCCTTGAAAGCTGAAACTTAGAAATTAGAAATTTAAAATATCAATAT
TTGTAAATTTGGAGATTGTT

Downstream 100 bases:

>100_bases
AATGGTTTTAAGGGAATTTTGGTTCCCTTTTGACACTGGTTTTCTTGGCACAAAGTTTGGATATAGGGTCAACGGATTCA
CTAATCAGTCTTTTAAGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MKKKLIVGMLAAAAVMQATSPAMAEYSERRPAPYPEAPPMPPPPPGQYLQEGSLEIQSVTRRTGGEWYRISLRRAASLER
IEVAALAMRLKIHDASVITEDGRRVSIREFRNTAVFGVGSRAVSENLNLRSRIVAIDILAESYGGYADVRVTALSTDSRP
QLVLGNLPQQPGGNGGHNGGHNGGGNNGGHGGGNYACSRRADVTRSLEQQDVEMDAWSRRKNAASYNSVEYNMADRELKA
TAARMVQIAKSNEAKETKMEKLEVLGALYFQKMNQQSYNSTQYNAYSEVGRAIFSAMENGLKLALDCDIRTTVQLLARGD
EYVGKMNTYSYNSVPYNAYSRMAQQVYAAAPNFYEQEVRRLDKTFMKIDEELDENHRKMNSYSYNSVGYNSYAAIIRKGV
ELSQGSLRRLVPHMGSLQRFDLVKHFDGRKNAYSYNSLLYNHFAAMKEIAAR

Sequences:

>Translated_452_residues
MKKKLIVGMLAAAAVMQATSPAMAEYSERRPAPYPEAPPMPPPPPGQYLQEGSLEIQSVTRRTGGEWYRISLRRAASLER
IEVAALAMRLKIHDASVITEDGRRVSIREFRNTAVFGVGSRAVSENLNLRSRIVAIDILAESYGGYADVRVTALSTDSRP
QLVLGNLPQQPGGNGGHNGGHNGGGNNGGHGGGNYACSRRADVTRSLEQQDVEMDAWSRRKNAASYNSVEYNMADRELKA
TAARMVQIAKSNEAKETKMEKLEVLGALYFQKMNQQSYNSTQYNAYSEVGRAIFSAMENGLKLALDCDIRTTVQLLARGD
EYVGKMNTYSYNSVPYNAYSRMAQQVYAAAPNFYEQEVRRLDKTFMKIDEELDENHRKMNSYSYNSVGYNSYAAIIRKGV
ELSQGSLRRLVPHMGSLQRFDLVKHFDGRKNAYSYNSLLYNHFAAMKEIAAR
>Mature_452_residues
MKKKLIVGMLAAAAVMQATSPAMAEYSERRPAPYPEAPPMPPPPPGQYLQEGSLEIQSVTRRTGGEWYRISLRRAASLER
IEVAALAMRLKIHDASVITEDGRRVSIREFRNTAVFGVGSRAVSENLNLRSRIVAIDILAESYGGYADVRVTALSTDSRP
QLVLGNLPQQPGGNGGHNGGHNGGGNNGGHGGGNYACSRRADVTRSLEQQDVEMDAWSRRKNAASYNSVEYNMADRELKA
TAARMVQIAKSNEAKETKMEKLEVLGALYFQKMNQQSYNSTQYNAYSEVGRAIFSAMENGLKLALDCDIRTTVQLLARGD
EYVGKMNTYSYNSVPYNAYSRMAQQVYAAAPNFYEQEVRRLDKTFMKIDEELDENHRKMNSYSYNSVGYNSYAAIIRKGV
ELSQGSLRRLVPHMGSLQRFDLVKHFDGRKNAYSYNSLLYNHFAAMKEIAAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50386; Mature: 50386

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS00131 CARBOXYPEPT_SER_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKLIVGMLAAAAVMQATSPAMAEYSERRPAPYPEAPPMPPPPPGQYLQEGSLEIQSVT
CCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHH
RRTGGEWYRISLRRAASLERIEVAALAMRLKIHDASVITEDGRRVSIREFRNTAVFGVGS
HHCCCCEEEEEEHHHHHHHHHHHHHHHHHHEECCCCEEECCCCEEEHHHHCCCEEEECCC
RAVSENLNLRSRIVAIDILAESYGGYADVRVTALSTDSRPQLVLGNLPQQPGGNGGHNGG
HHHHCCCCHHHHEEEEEEHHHHCCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCC
HNGGGNNGGHGGGNYACSRRADVTRSLEQQDVEMDAWSRRKNAASYNSVEYNMADRELKA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEECCCHHHHHH
TAARMVQIAKSNEAKETKMEKLEVLGALYFQKMNQQSYNSTQYNAYSEVGRAIFSAMENG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
LKLALDCDIRTTVQLLARGDEYVGKMNTYSYNSVPYNAYSRMAQQVYAAAPNFYEQEVRR
CEEEEECCHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
LDKTFMKIDEELDENHRKMNSYSYNSVGYNSYAAIIRKGVELSQGSLRRLVPHMGSLQRF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHH
DLVKHFDGRKNAYSYNSLLYNHFAAMKEIAAR
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKKLIVGMLAAAAVMQATSPAMAEYSERRPAPYPEAPPMPPPPPGQYLQEGSLEIQSVT
CCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHH
RRTGGEWYRISLRRAASLERIEVAALAMRLKIHDASVITEDGRRVSIREFRNTAVFGVGS
HHCCCCEEEEEEHHHHHHHHHHHHHHHHHHEECCCCEEECCCCEEEHHHHCCCEEEECCC
RAVSENLNLRSRIVAIDILAESYGGYADVRVTALSTDSRPQLVLGNLPQQPGGNGGHNGG
HHHHCCCCHHHHEEEEEEHHHHCCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCC
HNGGGNNGGHGGGNYACSRRADVTRSLEQQDVEMDAWSRRKNAASYNSVEYNMADRELKA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEECCCHHHHHH
TAARMVQIAKSNEAKETKMEKLEVLGALYFQKMNQQSYNSTQYNAYSEVGRAIFSAMENG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
LKLALDCDIRTTVQLLARGDEYVGKMNTYSYNSVPYNAYSRMAQQVYAAAPNFYEQEVRR
CEEEEECCHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
LDKTFMKIDEELDENHRKMNSYSYNSVGYNSYAAIIRKGVELSQGSLRRLVPHMGSLQRF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHH
DLVKHFDGRKNAYSYNSLLYNHFAAMKEIAAR
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA