| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522596
Identifier: 42522596
GI number: 42522596
Start: 983798
End: 984982
Strand: Direct
Name: 42522596
Synonym: Bd1038
Alternate gene names: NA
Gene position: 983798-984982 (Clockwise)
Preceding gene: 42522595
Following gene: 42522597
Centisome position: 26.01
GC content: 52.32
Gene sequence:
>1185_bases TTGCATTTTTCAGCGCTTAATATGAAAAACGTGGTGCGCTCCCTTACCTTTGCGGCTTTGCTTGTCTCTGCTTGGATCCC GGCCTGGGCCGAGGATTTTTCGTCTATTGAGACGGAAGTCGTCGAGAGCACACTTGAAAAGGCCCAGATCGCCCAGCAGG ACAAGTTGCTTATTAAGGTAGGCAAGGGCGAGCAGATCTATGAGTTTGAAACGACTCCGGATCGAGAACTGATGAAAGAA TCTTTAGGATTGAAGATCCCGGAAAAAGTGCGGGAGCAGATTATCGCCCGGGGTGGTTCGGTGGCGGAAGCTGATCCTAT GGAGCCCTTTGAAAGCCTGCCGGAAGATCGCCGCAAAAAATTCCATGAAATGCGCCTGATGTTTTTGACGAATGCCGCGC GCATTCTGAATTCCACCAAGTTCGTTTATGGTGCCGGAAGCCTTGTGGGCGACGGTCTGAGTTTTGTGAAAATCAAAGTG AAAAAAGCCTTCGGAAAAGAGACTGTCGTGGAATCCCACGCCCAAAGATCCTTCCAGGTGCGCAGCCAGCAGGCCGTGCA GAGCATCCTGCGTGGTTTGGATTACAAGCTGTGGTCCCAGGCACCACTCGTGATTGATTCCAACGAATTTGGTTTGAGTG TTTCCGCCGGTATTTTGGCTGAAGCGGGCGTTCTGCGCAAAGGCGGCGGCGGAGCTGATGAAATGGGCTTCAGCATTGCC TTTAACAAAACCAAAAAGGCCTTCGTGTTTGAGATCTTCCATAACTCTGAAAAATTCGACAACACCAAGGCGGCCATCAC CGTGATAGGTGTGGTTGGAAAAGCCGGTATTACCATGGGCCGCCGTGATGGTGCTGAGTCCCTGAAAGGGACGTCGTTCT ATCCTCCGGCAATTCCGGGCTACAGTGCCTCTTCGCCCGAATTTTTCTCTTCGGGTTTGAGCTCAAGTCTTGGCTTCCCT CCGCCCCCTCTGGCGGACCTGTTGACGTTCACCAACCGCTTTGAGCGCCAGGCTTTGATCCGCGTGACTGTGTCACCGTT GGTCAAGGGCTTCGTCAGAGTCCAAATAGGCGATGTAAAGGGCTCAATGCGCCTTGTTGCAATGCGATTTGTTGACGTCT ACACCGCAATATCTGACAAAGTCCACTTGGGTGGGCGTCGTGCTTGCGGCCCTGTATTCAACTAA
Upstream 100 bases:
>100_bases GATCCCATGCAGTGGCGGGCTGGGGCCTGGTGTCTAAGCCTTAGACAGGAAAAACTCGAAGAATCAAATAGTTAGCATTG CAAAAAGCCCGGTCCTGGGA
Downstream 100 bases:
>100_bases TCTTTCTTGCGGTGCAAAATGAAATTTATCGTATTTGAGGGGCTGGACGGCTCCGGCAAAAGTTCTTTGATGGCGGCGTT GGAGCGTGAGCTGCAAAACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 394; Mature: 394
Protein sequence:
>394_residues MHFSALNMKNVVRSLTFAALLVSAWIPAWAEDFSSIETEVVESTLEKAQIAQQDKLLIKVGKGEQIYEFETTPDRELMKE SLGLKIPEKVREQIIARGGSVAEADPMEPFESLPEDRRKKFHEMRLMFLTNAARILNSTKFVYGAGSLVGDGLSFVKIKV KKAFGKETVVESHAQRSFQVRSQQAVQSILRGLDYKLWSQAPLVIDSNEFGLSVSAGILAEAGVLRKGGGGADEMGFSIA FNKTKKAFVFEIFHNSEKFDNTKAAITVIGVVGKAGITMGRRDGAESLKGTSFYPPAIPGYSASSPEFFSSGLSSSLGFP PPPLADLLTFTNRFERQALIRVTVSPLVKGFVRVQIGDVKGSMRLVAMRFVDVYTAISDKVHLGGRRACGPVFN
Sequences:
>Translated_394_residues MHFSALNMKNVVRSLTFAALLVSAWIPAWAEDFSSIETEVVESTLEKAQIAQQDKLLIKVGKGEQIYEFETTPDRELMKE SLGLKIPEKVREQIIARGGSVAEADPMEPFESLPEDRRKKFHEMRLMFLTNAARILNSTKFVYGAGSLVGDGLSFVKIKV KKAFGKETVVESHAQRSFQVRSQQAVQSILRGLDYKLWSQAPLVIDSNEFGLSVSAGILAEAGVLRKGGGGADEMGFSIA FNKTKKAFVFEIFHNSEKFDNTKAAITVIGVVGKAGITMGRRDGAESLKGTSFYPPAIPGYSASSPEFFSSGLSSSLGFP PPPLADLLTFTNRFERQALIRVTVSPLVKGFVRVQIGDVKGSMRLVAMRFVDVYTAISDKVHLGGRRACGPVFN >Mature_394_residues MHFSALNMKNVVRSLTFAALLVSAWIPAWAEDFSSIETEVVESTLEKAQIAQQDKLLIKVGKGEQIYEFETTPDRELMKE SLGLKIPEKVREQIIARGGSVAEADPMEPFESLPEDRRKKFHEMRLMFLTNAARILNSTKFVYGAGSLVGDGLSFVKIKV KKAFGKETVVESHAQRSFQVRSQQAVQSILRGLDYKLWSQAPLVIDSNEFGLSVSAGILAEAGVLRKGGGGADEMGFSIA FNKTKKAFVFEIFHNSEKFDNTKAAITVIGVVGKAGITMGRRDGAESLKGTSFYPPAIPGYSASSPEFFSSGLSSSLGFP PPPLADLLTFTNRFERQALIRVTVSPLVKGFVRVQIGDVKGSMRLVAMRFVDVYTAISDKVHLGGRRACGPVFN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43114; Mature: 43114
Theoretical pI: Translated: 9.96; Mature: 9.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHFSALNMKNVVRSLTFAALLVSAWIPAWAEDFSSIETEVVESTLEKAQIAQQDKLLIKV CCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE GKGEQIYEFETTPDRELMKESLGLKIPEKVREQIIARGGSVAEADPMEPFESLPEDRRKK CCCCEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHH FHEMRLMFLTNAARILNSTKFVYGAGSLVGDGLSFVKIKVKKAFGKETVVESHAQRSFQV HHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCEEEEEEEHHHCCHHHHHHHHHHHHHHH RSQQAVQSILRGLDYKLWSQAPLVIDSNEFGLSVSAGILAEAGVLRKGGGGADEMGFSIA HHHHHHHHHHHHCCHHHHCCCCEEEECCCCCCEEHHHHHHHCCCCCCCCCCCHHCCEEEE FNKTKKAFVFEIFHNSEKFDNTKAAITVIGVVGKAGITMGRRDGAESLKGTSFYPPAIPG ECCCCCEEEEEEECCCCCCCCCHHEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCC YSASSPEFFSSGLSSSLGFPPPPLADLLTFTNRFERQALIRVTVSPLVKGFVRVQIGDVK CCCCCCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCC GSMRLVAMRFVDVYTAISDKVHLGGRRACGPVFN CCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCC >Mature Secondary Structure MHFSALNMKNVVRSLTFAALLVSAWIPAWAEDFSSIETEVVESTLEKAQIAQQDKLLIKV CCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE GKGEQIYEFETTPDRELMKESLGLKIPEKVREQIIARGGSVAEADPMEPFESLPEDRRKK CCCCEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHH FHEMRLMFLTNAARILNSTKFVYGAGSLVGDGLSFVKIKVKKAFGKETVVESHAQRSFQV HHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCEEEEEEEHHHCCHHHHHHHHHHHHHHH RSQQAVQSILRGLDYKLWSQAPLVIDSNEFGLSVSAGILAEAGVLRKGGGGADEMGFSIA HHHHHHHHHHHHCCHHHHCCCCEEEECCCCCCEEHHHHHHHCCCCCCCCCCCHHCCEEEE FNKTKKAFVFEIFHNSEKFDNTKAAITVIGVVGKAGITMGRRDGAESLKGTSFYPPAIPG ECCCCCEEEEEEECCCCCCCCCHHEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCC YSASSPEFFSSGLSSSLGFPPPPLADLLTFTNRFERQALIRVTVSPLVKGFVRVQIGDVK CCCCCCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCC GSMRLVAMRFVDVYTAISDKVHLGGRRACGPVFN CCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA