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The map label for this gene is rfaQ [C]

Identifier: 42522209

GI number: 42522209

Start: 576260

End: 577714

Strand: Direct

Name: rfaQ [C]

Synonym: Bd0618

Alternate gene names: 42522209

Gene position: 576260-577714 (Clockwise)

Preceding gene: 42522208

Following gene: 42522210

Centisome position: 15.23

GC content: 54.09

Gene sequence:

>1455_bases
ATGAAAATACTCATCCTGCAACTCGCTAGGCTCGGGGATATCTATATGACCTGGCCTGTTTTGCAGGGCCTGCGTCGTAC
TTATCCCACGGCAGAGATTCATATTCTGACTCGTCCGCGCTTTGAAAGCGCCCTTGAAGGGTTGCAGGCGGTGGATCGTC
ATTGGTCACTGCCTTCAAGTCATATTCTGACGCCGCTGATTCAGGCCGAGCCTGATCTGGAAGCGTCTTTGAGTCATATG
GATGAATTCGTGACGACTTTGAAGTCCGAACAATTCGACCGCATTATTAATTTCACATTCTCTCCCTTCTCAAGCTATCT
GACTCACGCGTTGTCTGGCGCGAACACCGTGGTGAACGGGTACACCCGCAACGCCGACGGCAGTTTGTGTTTTGCTGATG
ACGTCAGTGCTTATTTCTATGCCCAGGTGGGGCTAGATAAGCCCAACCGCGTTCACGTCGCTGACATTCTGGCGTCGATG
GTGGATGTGCAGTACACGGAAGAAGACTGGGGCATTTCCACTTATCAGGAAGCTTCAGTGACTTTGCCAGAACGCTACAT
GGTTTTGCATGTCGGTGCCAGTGATCCACAGAAAGCTTTAAGCCCCGATGCGTGGGTGCGCGCCTTGAAGGTGACTTCGC
AAAGATACGCGCATCTGCCGGTGGTGCTGATTGGTTCCGCCGCGGAAGCCCCATTGGCGCTGCAGATTGAATCCCAGGTG
CCGGATATGACGTTTGTGAATCTGGCGGGCCGCACGCAAGTGTCCGAACTGCCAGCAATCATCAAAAAAGCCGAAGTGCT
GGTGGGGTGCGACAGTGCGCCAATTCATATCGCCTCTTTGACGGACACACCGACTTTGAACGTCAGTGTGGGGCCGGTGA
ATTTCTGGGAGACCGGCCCGAAAGCAAGTCTGTCCTTTATCTATCGCCGTGAAAGTGAAGCCGAAGTGGTGGCCGAGGAT
CTGGGCGCCGTGCTGGGGGATCTTTTGGATGGTCAGGTCCGCGAAGGACTGATCGTCAGAACGGGCGGCCTTGTGAGCTA
TGCTCGCGAAGAGGCGCCTGCTGAAAGCTTCCAGTGGCAACTGGTGGAGGCTCTTTATATGGGCGGCAGTTTCCCGATCG
CCGACCGCATGGAGATCCTGCAGGGGGCGATGAAGCTGAATGATATCAATACTTTTGCTATGGAGCAGCTGGCGTTGATT
CCCGAGCTGGGGGTGGCCAAGGTCGCTCCTTTCCTGGACAGCGCCGAAGAAGTTATCAACAACATTAGCCGAATGGTTCC
GGAATTGAGTCCTCTAGTAAGCTGGTATCACGCGGAAAGAATCCGCATTGCTCCCGGCTCGCTCGAGGAAATCCGTACCG
CAACATTGAATGTGCATGAGCGATTCAAACGCTACCTTCATGTATACATTCCGCATGAGGCACTCAAGGAAGAGGCAGGC
AATGGAGCGGTTTAA

Upstream 100 bases:

>100_bases
CTGGAAAAAGCCTACAGCGAGATCTTGAAGACGCAAAGTTATAGTAAGGAAGCTGAAAAAGTTCAGTTGTTGAAAGAACT
CGTCAAGGAACAGATTAAAA

Downstream 100 bases:

>100_bases
AGTCAGCGGAGACGATCTTCGCAATTTCTATAATGAAAATATTCCCTTAGCGCGTGTGTTCAGTGATATCGAATCAGACC
TGCGCCATACCAATCAGGTT

Product: putative lipopolysaccharide biosynthesis protein

Products: NA

Alternate protein names: Lipopolysaccharide Biosynthesis Protein; Lipopolysaccharide Heptosyltransferase-I; ADP-Heptose-LPS Heptosyltransferase III; ADP-HeptoseLPS Heptosyltransferase; Glycosyl Transferase Family Protein; Glycosyltransferase

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MKILILQLARLGDIYMTWPVLQGLRRTYPTAEIHILTRPRFESALEGLQAVDRHWSLPSSHILTPLIQAEPDLEASLSHM
DEFVTTLKSEQFDRIINFTFSPFSSYLTHALSGANTVVNGYTRNADGSLCFADDVSAYFYAQVGLDKPNRVHVADILASM
VDVQYTEEDWGISTYQEASVTLPERYMVLHVGASDPQKALSPDAWVRALKVTSQRYAHLPVVLIGSAAEAPLALQIESQV
PDMTFVNLAGRTQVSELPAIIKKAEVLVGCDSAPIHIASLTDTPTLNVSVGPVNFWETGPKASLSFIYRRESEAEVVAED
LGAVLGDLLDGQVREGLIVRTGGLVSYAREEAPAESFQWQLVEALYMGGSFPIADRMEILQGAMKLNDINTFAMEQLALI
PELGVAKVAPFLDSAEEVINNISRMVPELSPLVSWYHAERIRIAPGSLEEIRTATLNVHERFKRYLHVYIPHEALKEEAG
NGAV

Sequences:

>Translated_484_residues
MKILILQLARLGDIYMTWPVLQGLRRTYPTAEIHILTRPRFESALEGLQAVDRHWSLPSSHILTPLIQAEPDLEASLSHM
DEFVTTLKSEQFDRIINFTFSPFSSYLTHALSGANTVVNGYTRNADGSLCFADDVSAYFYAQVGLDKPNRVHVADILASM
VDVQYTEEDWGISTYQEASVTLPERYMVLHVGASDPQKALSPDAWVRALKVTSQRYAHLPVVLIGSAAEAPLALQIESQV
PDMTFVNLAGRTQVSELPAIIKKAEVLVGCDSAPIHIASLTDTPTLNVSVGPVNFWETGPKASLSFIYRRESEAEVVAED
LGAVLGDLLDGQVREGLIVRTGGLVSYAREEAPAESFQWQLVEALYMGGSFPIADRMEILQGAMKLNDINTFAMEQLALI
PELGVAKVAPFLDSAEEVINNISRMVPELSPLVSWYHAERIRIAPGSLEEIRTATLNVHERFKRYLHVYIPHEALKEEAG
NGAV
>Mature_484_residues
MKILILQLARLGDIYMTWPVLQGLRRTYPTAEIHILTRPRFESALEGLQAVDRHWSLPSSHILTPLIQAEPDLEASLSHM
DEFVTTLKSEQFDRIINFTFSPFSSYLTHALSGANTVVNGYTRNADGSLCFADDVSAYFYAQVGLDKPNRVHVADILASM
VDVQYTEEDWGISTYQEASVTLPERYMVLHVGASDPQKALSPDAWVRALKVTSQRYAHLPVVLIGSAAEAPLALQIESQV
PDMTFVNLAGRTQVSELPAIIKKAEVLVGCDSAPIHIASLTDTPTLNVSVGPVNFWETGPKASLSFIYRRESEAEVVAED
LGAVLGDLLDGQVREGLIVRTGGLVSYAREEAPAESFQWQLVEALYMGGSFPIADRMEILQGAMKLNDINTFAMEQLALI
PELGVAKVAPFLDSAEEVINNISRMVPELSPLVSWYHAERIRIAPGSLEEIRTATLNVHERFKRYLHVYIPHEALKEEAG
NGAV

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790062, Length=281, Percent_Identity=20.9964412811388, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.-.-.- [C]

Molecular weight: Translated: 53456; Mature: 53456

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILILQLARLGDIYMTWPVLQGLRRTYPTAEIHILTRPRFESALEGLQAVDRHWSLPSS
CEEEEEEHHHHCCCEEHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCH
HILTPLIQAEPDLEASLSHMDEFVTTLKSEQFDRIINFTFSPFSSYLTHALSGANTVVNG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEC
YTRNADGSLCFADDVSAYFYAQVGLDKPNRVHVADILASMVDVQYTEEDWGISTYQEASV
EEECCCCCEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHCCEECCCCCCCCCCCCCCC
TLPERYMVLHVGASDPQKALSPDAWVRALKVTSQRYAHLPVVLIGSAAEAPLALQIESQV
CCCCEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCC
PDMTFVNLAGRTQVSELPAIIKKAEVLVGCDSAPIHIASLTDTPTLNVSVGPVNFWETGP
CCEEEEEECCCCHHHHHHHHHHHHHEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCC
KASLSFIYRRESEAEVVAEDLGAVLGDLLDGQVREGLIVRTGGLVSYAREEAPAESFQWQ
CCCEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHCCEEEEECCHHHHHHHCCCHHHHHHH
LVEALYMGGSFPIADRMEILQGAMKLNDINTFAMEQLALIPELGVAKVAPFLDSAEEVIN
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
NISRMVPELSPLVSWYHAERIRIAPGSLEEIRTATLNVHERFKRYLHVYIPHEALKEEAG
HHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHEEEEECHHHHHHCCC
NGAV
CCCC
>Mature Secondary Structure
MKILILQLARLGDIYMTWPVLQGLRRTYPTAEIHILTRPRFESALEGLQAVDRHWSLPSS
CEEEEEEHHHHCCCEEHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCH
HILTPLIQAEPDLEASLSHMDEFVTTLKSEQFDRIINFTFSPFSSYLTHALSGANTVVNG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEC
YTRNADGSLCFADDVSAYFYAQVGLDKPNRVHVADILASMVDVQYTEEDWGISTYQEASV
EEECCCCCEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHCCEECCCCCCCCCCCCCCC
TLPERYMVLHVGASDPQKALSPDAWVRALKVTSQRYAHLPVVLIGSAAEAPLALQIESQV
CCCCEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCC
PDMTFVNLAGRTQVSELPAIIKKAEVLVGCDSAPIHIASLTDTPTLNVSVGPVNFWETGP
CCEEEEEECCCCHHHHHHHHHHHHHEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCC
KASLSFIYRRESEAEVVAEDLGAVLGDLLDGQVREGLIVRTGGLVSYAREEAPAESFQWQ
CCCEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHCCEEEEECCHHHHHHHCCCHHHHHHH
LVEALYMGGSFPIADRMEILQGAMKLNDINTFAMEQLALIPELGVAKVAPFLDSAEEVIN
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
NISRMVPELSPLVSWYHAERIRIAPGSLEEIRTATLNVHERFKRYLHVYIPHEALKEEAG
HHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHEEEEECHHHHHHCCC
NGAV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA