| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is torS [H]
Identifier: 42522105
GI number: 42522105
Start: 465422
End: 467722
Strand: Direct
Name: torS [H]
Synonym: Bd0499
Alternate gene names: 42522105
Gene position: 465422-467722 (Clockwise)
Preceding gene: 42522104
Following gene: 42522106
Centisome position: 12.3
GC content: 53.85
Gene sequence:
>2301_bases ATGAAAAAGAAGCTGACCTTTGTCCATTTATTCCTGCTGAATCAGCTGGTGACAACCCTGGTGCTTTTGACAGTGCTGGG GGTGTATGGCACGCATCTTTTCATTCAAGAGCAGCGTGCGATCCGCGAGCGTATGGAACCGGCCTCGGCCCGTGAAGTGG ACCGGATCAACAATGACTTTGCCACGCTGGAAGCCAACGTTCAGCGCCTTAAGAGCATGGTGGAACTTTTTGATGTGATG CCCAAGGGCACGCGGGTGGAAAAGTTCCGTCAGTTTGCCTCGGCCACCATTGCGGGCCACAGCACACAATTCAACGCCTG GGTTGCTTTGGGGCCCCGCCTTGCCAAGGAATACTTGGGACGGGAATCCTATGTGTATGTTGTGCACCGGGATTATTCCC TGTTTGCCAGTCCCAAATACAATGATCCAACCACTTTCGTTGCAGAAGTGTTTACTGAGCCCGGTTACGACAAGGATCCG GATGTTCAATGGTGGTGGATGAATGAAAAGAGCTCCGGAGTAAACTATTCGGATTTCTATTTCGACAAGGGCTATATGGA AAAGGTGATGTTCAGCACCACCACCGGCATTTTCAGCAATGCCGGAAAGCTCGAAGCGGTGGTGGGGATCGACACGTTGG CCGGGGATATTGCGCATCGACTGGGGATCTTCAAGCTGGGGGATACCGGGGGGGCTCTGGTCGTGGATGAGCACGGTCGC CCGGTCCTGCCGTTGATCGCCAAAGACACACCCGTGCTGGGTTTTAAATATCTGCGGGCCCTGAATCAGGATGAGTTCAG GGCGATGCCCAAGCTTTCGCAGAAGGTGTTTAACATTCAAAACCAGCGTCAGCTTCAGGAATTTCCCGGAGCCGACGGCA AAACTTATCTGACTTATTCCCGTCCCATCAAAGGCAAGCCCTGGCATCTGGTGATTTATCAGGAAAAGGGCGAGGCGTAT TCCGGATTGTACTTCCGTTTGTTCTTCTTTGGTTTTGTGGCCCTGGTGGCTTATGTGGTGTTCACCCTGATGGTGTGGAT GACCGGAAAGTACGTGATCGCGCAGGACAAAGAGGCCCTGGCCCGCCTGCAGGATTCCCGCGACCGTGCTGAAGCGGCGA CGCGGGCCAAGTCATTGTTTCTTTCAACCATGAGCCACGAGATCCGCACGCCACTGAATGCGATGCTGGGATCGGCTGAG CTGCTGAATGAAACGCATTTGAATTTTGAACAGAAAGAACTTCTGATATCTCTGCAAAGTGCCGGGGATACGCTGCTTAG CATGCTGAATAACATCCTGGATTTCTCCAAGTTCGAGTCAGGCCGCATGCAGCTGGAAAGCCGTGAGTTTCTGTTGAGCG ATCTTGTGCGTGAGGTGCAGGCATTGATCAGCACGTCGGTCTTGCGCAAGAATTTGCAGTTCACCTTCCATCCTCCGGAG CATGACCGCTGGATTGTCGGGGACTCTCTGCGGCTGAAGCAGGTGTTGATGAACCTGCTGGGGAATGCCGTGAAGTTCAC GGACCGCGGGGCGATCGAGTTGACGGTGCAGCCTTATCCCGGAAGTGAGCCGGGAAAAGAGACTATCTTTTTTGAGGTCA AGGACACCGGCATCGGGATTGCCAAAGAAAACCTGAAAAAAGTCTTTGATGAATTCGGGCAGGAGGACTCTTCGGTCACG CGTCGCTTCGGGGGCACGGGCCTGGGCCTGAGCATTTCGCAGAAGATCGTGCAATTGATGGGCGGGGAGCTTTACTGTGA AAGCCGCCAGTTTGTGGGGTCGCGTTTCCATTTCTCTGTTCAGATGACTTCCCGCCGGGCGGAACTGTGGAGTGCGCGCT TTAATCTGGAGCTGACGCCGCCGCCGCAGCTGGTGCGACCTAGTTCTGAAGCGGGTCGCAAGAGCATCCTGATCGTGGAT GACATGGAAGAAAACCACACGCTGCTCAAAGCCTATATCAAGCGTCTGGAATATGTGACCACCGATTCGGCCTACAACGG CTATGAATGTCTGGAGATGTGGGAACGGGGTCATTACGACATGATCTTTATGGATGTGCAGATGCCGAAGATGTCGGGGC TGGACACCATCAGGAAGCTGCGTGAAATAGAGCGGGCCCGGGGTCTGCACCGAACCCCGGTGGTGGTGATTTCCGCCAAC AGCTTTACGGAAGACATTGAAAAAAGCCTTATGGCCGGAGCGGATCAGCACTGTGGCAAGCCGGTGCGCAAACAGACCGT TCTGGAAATCGTTCAAAAATACTGTTCAGAAGACATCGAAACAGCCCCTGCAAACTCTTAA
Upstream 100 bases:
>100_bases GAACTATTATTATGAAAAGAACTCTGACGGCTCGGGTGCGAAACTGACCACCTTCTATGGCACTGTCGGGTTGGGTGTGA ACTTCTAACCCACGGGTAGA
Downstream 100 bases:
>100_bases GACAGCGTTAAGTTTCTAACAGCTTATCCCGATATTACGAAGGTCCGACCGCGGAACGGATCTTGCCTCTATTCATTATG AAACGGGCAAACAGGGGGAA
Product: sensory transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 766; Mature: 766
Protein sequence:
>766_residues MKKKLTFVHLFLLNQLVTTLVLLTVLGVYGTHLFIQEQRAIRERMEPASAREVDRINNDFATLEANVQRLKSMVELFDVM PKGTRVEKFRQFASATIAGHSTQFNAWVALGPRLAKEYLGRESYVYVVHRDYSLFASPKYNDPTTFVAEVFTEPGYDKDP DVQWWWMNEKSSGVNYSDFYFDKGYMEKVMFSTTTGIFSNAGKLEAVVGIDTLAGDIAHRLGIFKLGDTGGALVVDEHGR PVLPLIAKDTPVLGFKYLRALNQDEFRAMPKLSQKVFNIQNQRQLQEFPGADGKTYLTYSRPIKGKPWHLVIYQEKGEAY SGLYFRLFFFGFVALVAYVVFTLMVWMTGKYVIAQDKEALARLQDSRDRAEAATRAKSLFLSTMSHEIRTPLNAMLGSAE LLNETHLNFEQKELLISLQSAGDTLLSMLNNILDFSKFESGRMQLESREFLLSDLVREVQALISTSVLRKNLQFTFHPPE HDRWIVGDSLRLKQVLMNLLGNAVKFTDRGAIELTVQPYPGSEPGKETIFFEVKDTGIGIAKENLKKVFDEFGQEDSSVT RRFGGTGLGLSISQKIVQLMGGELYCESRQFVGSRFHFSVQMTSRRAELWSARFNLELTPPPQLVRPSSEAGRKSILIVD DMEENHTLLKAYIKRLEYVTTDSAYNGYECLEMWERGHYDMIFMDVQMPKMSGLDTIRKLREIERARGLHRTPVVVISAN SFTEDIEKSLMAGADQHCGKPVRKQTVLEIVQKYCSEDIETAPANS
Sequences:
>Translated_766_residues MKKKLTFVHLFLLNQLVTTLVLLTVLGVYGTHLFIQEQRAIRERMEPASAREVDRINNDFATLEANVQRLKSMVELFDVM PKGTRVEKFRQFASATIAGHSTQFNAWVALGPRLAKEYLGRESYVYVVHRDYSLFASPKYNDPTTFVAEVFTEPGYDKDP DVQWWWMNEKSSGVNYSDFYFDKGYMEKVMFSTTTGIFSNAGKLEAVVGIDTLAGDIAHRLGIFKLGDTGGALVVDEHGR PVLPLIAKDTPVLGFKYLRALNQDEFRAMPKLSQKVFNIQNQRQLQEFPGADGKTYLTYSRPIKGKPWHLVIYQEKGEAY SGLYFRLFFFGFVALVAYVVFTLMVWMTGKYVIAQDKEALARLQDSRDRAEAATRAKSLFLSTMSHEIRTPLNAMLGSAE LLNETHLNFEQKELLISLQSAGDTLLSMLNNILDFSKFESGRMQLESREFLLSDLVREVQALISTSVLRKNLQFTFHPPE HDRWIVGDSLRLKQVLMNLLGNAVKFTDRGAIELTVQPYPGSEPGKETIFFEVKDTGIGIAKENLKKVFDEFGQEDSSVT RRFGGTGLGLSISQKIVQLMGGELYCESRQFVGSRFHFSVQMTSRRAELWSARFNLELTPPPQLVRPSSEAGRKSILIVD DMEENHTLLKAYIKRLEYVTTDSAYNGYECLEMWERGHYDMIFMDVQMPKMSGLDTIRKLREIERARGLHRTPVVVISAN SFTEDIEKSLMAGADQHCGKPVRKQTVLEIVQKYCSEDIETAPANS >Mature_766_residues MKKKLTFVHLFLLNQLVTTLVLLTVLGVYGTHLFIQEQRAIRERMEPASAREVDRINNDFATLEANVQRLKSMVELFDVM PKGTRVEKFRQFASATIAGHSTQFNAWVALGPRLAKEYLGRESYVYVVHRDYSLFASPKYNDPTTFVAEVFTEPGYDKDP DVQWWWMNEKSSGVNYSDFYFDKGYMEKVMFSTTTGIFSNAGKLEAVVGIDTLAGDIAHRLGIFKLGDTGGALVVDEHGR PVLPLIAKDTPVLGFKYLRALNQDEFRAMPKLSQKVFNIQNQRQLQEFPGADGKTYLTYSRPIKGKPWHLVIYQEKGEAY SGLYFRLFFFGFVALVAYVVFTLMVWMTGKYVIAQDKEALARLQDSRDRAEAATRAKSLFLSTMSHEIRTPLNAMLGSAE LLNETHLNFEQKELLISLQSAGDTLLSMLNNILDFSKFESGRMQLESREFLLSDLVREVQALISTSVLRKNLQFTFHPPE HDRWIVGDSLRLKQVLMNLLGNAVKFTDRGAIELTVQPYPGSEPGKETIFFEVKDTGIGIAKENLKKVFDEFGQEDSSVT RRFGGTGLGLSISQKIVQLMGGELYCESRQFVGSRFHFSVQMTSRRAELWSARFNLELTPPPQLVRPSSEAGRKSILIVD DMEENHTLLKAYIKRLEYVTTDSAYNGYECLEMWERGHYDMIFMDVQMPKMSGLDTIRKLREIERARGLHRTPVVVISAN SFTEDIEKSLMAGADQHCGKPVRKQTVLEIVQKYCSEDIETAPANS
Specific function: At low cell density, in absence of AI-2 (autoinducer 2), luxQ has a kinase activity and autophosphorylates on a histidine residue. The phosphoryl group is then transferred to an aspartate residue in the response regulator domain. The phosphoryl group is t
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI48994928, Length=393, Percent_Identity=32.0610687022901, Blast_Score=202, Evalue=5e-53, Organism=Escherichia coli, GI1789149, Length=327, Percent_Identity=34.8623853211009, Blast_Score=184, Evalue=3e-47, Organism=Escherichia coli, GI1788713, Length=420, Percent_Identity=32.6190476190476, Blast_Score=177, Evalue=2e-45, Organism=Escherichia coli, GI145693157, Length=241, Percent_Identity=36.9294605809129, Blast_Score=161, Evalue=1e-40, Organism=Escherichia coli, GI87081816, Length=361, Percent_Identity=31.5789473684211, Blast_Score=144, Evalue=2e-35, Organism=Escherichia coli, GI1788549, Length=253, Percent_Identity=28.4584980237154, Blast_Score=86, Evalue=6e-18, Organism=Escherichia coli, GI1786600, Length=228, Percent_Identity=29.8245614035088, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1788393, Length=214, Percent_Identity=27.5700934579439, Blast_Score=84, Evalue=4e-17, Organism=Escherichia coli, GI1786912, Length=265, Percent_Identity=27.1698113207547, Blast_Score=76, Evalue=8e-15, Organism=Escherichia coli, GI1787894, Length=236, Percent_Identity=26.6949152542373, Blast_Score=76, Evalue=1e-14, Organism=Escherichia coli, GI1790551, Length=229, Percent_Identity=27.9475982532751, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1790436, Length=236, Percent_Identity=28.8135593220339, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1790346, Length=242, Percent_Identity=29.7520661157025, Blast_Score=70, Evalue=7e-13, Organism=Escherichia coli, GI1786783, Length=232, Percent_Identity=26.7241379310345, Blast_Score=70, Evalue=7e-13, Organism=Escherichia coli, GI87082128, Length=305, Percent_Identity=26.5573770491803, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1789808, Length=233, Percent_Identity=25.3218884120172, Blast_Score=66, Evalue=1e-11, Organism=Escherichia coli, GI1790861, Length=214, Percent_Identity=25.2336448598131, Blast_Score=64, Evalue=4e-11, Organism=Escherichia coli, GI1788545, Length=256, Percent_Identity=25.78125, Blast_Score=63, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6322044, Length=83, Percent_Identity=40.9638554216867, Blast_Score=68, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR015387 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 - ProDom: PD142495 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF09308 LuxQ-periplasm; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 87101; Mature: 87101
Theoretical pI: Translated: 7.28; Mature: 7.28
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN ; PS00589 PTS_HPR_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKLTFVHLFLLNQLVTTLVLLTVLGVYGTHLFIQEQRAIRERMEPASAREVDRINNDF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCCCCHHHHHHHCCCH ATLEANVQRLKSMVELFDVMPKGTRVEKFRQFASATIAGHSTQFNAWVALGPRLAKEYLG HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHCC RESYVYVVHRDYSLFASPKYNDPTTFVAEVFTEPGYDKDPDVQWWWMNEKSSGVNYSDFY CCCEEEEEEECCEEEECCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHEE FDKGYMEKVMFSTTTGIFSNAGKLEAVVGIDTLAGDIAHRLGIFKLGDTGGALVVDEHGR CCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCCEEEECCCCCEEEECCCCC PVLPLIAKDTPVLGFKYLRALNQDEFRAMPKLSQKVFNIQNQRQLQEFPGADGKTYLTYS CEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEC RPIKGKPWHLVIYQEKGEAYSGLYFRLFFFGFVALVAYVVFTLMVWMTGKYVIAQDKEAL CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHH ARLQDSRDRAEAATRAKSLFLSTMSHEIRTPLNAMLGSAELLNETHLNFEQKELLISLQS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHCCCCCHHHHHHHHHH AGDTLLSMLNNILDFSKFESGRMQLESREFLLSDLVREVQALISTSVLRKNLQFTFHPPE CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC HDRWIVGDSLRLKQVLMNLLGNAVKFTDRGAIELTVQPYPGSEPGKETIFFEVKDTGIGI CCCEEECCCHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCH AKENLKKVFDEFGQEDSSVTRRFGGTGLGLSISQKIVQLMGGELYCESRQFVGSRFHFSV HHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEECCHHHCCCEEEEEE QMTSRRAELWSARFNLELTPPPQLVRPSSEAGRKSILIVDDMEENHTLLKAYIKRLEYVT EEHHHHHHHHHHEEEEEECCCCHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHEE TDSAYNGYECLEMWERGHYDMIFMDVQMPKMSGLDTIRKLREIERARGLHRTPVVVISAN CCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECC SFTEDIEKSLMAGADQHCGKPVRKQTVLEIVQKYCSEDIETAPANS CHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MKKKLTFVHLFLLNQLVTTLVLLTVLGVYGTHLFIQEQRAIRERMEPASAREVDRINNDF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCCCCHHHHHHHCCCH ATLEANVQRLKSMVELFDVMPKGTRVEKFRQFASATIAGHSTQFNAWVALGPRLAKEYLG HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHCC RESYVYVVHRDYSLFASPKYNDPTTFVAEVFTEPGYDKDPDVQWWWMNEKSSGVNYSDFY CCCEEEEEEECCEEEECCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHEE FDKGYMEKVMFSTTTGIFSNAGKLEAVVGIDTLAGDIAHRLGIFKLGDTGGALVVDEHGR CCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCCEEEECCCCCEEEECCCCC PVLPLIAKDTPVLGFKYLRALNQDEFRAMPKLSQKVFNIQNQRQLQEFPGADGKTYLTYS CEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEC RPIKGKPWHLVIYQEKGEAYSGLYFRLFFFGFVALVAYVVFTLMVWMTGKYVIAQDKEAL CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHH ARLQDSRDRAEAATRAKSLFLSTMSHEIRTPLNAMLGSAELLNETHLNFEQKELLISLQS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHCCCCCHHHHHHHHHH AGDTLLSMLNNILDFSKFESGRMQLESREFLLSDLVREVQALISTSVLRKNLQFTFHPPE CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC HDRWIVGDSLRLKQVLMNLLGNAVKFTDRGAIELTVQPYPGSEPGKETIFFEVKDTGIGI CCCEEECCCHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCH AKENLKKVFDEFGQEDSSVTRRFGGTGLGLSISQKIVQLMGGELYCESRQFVGSRFHFSV HHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEECCHHHCCCEEEEEE QMTSRRAELWSARFNLELTPPPQLVRPSSEAGRKSILIVDDMEENHTLLKAYIKRLEYVT EEHHHHHHHHHHEEEEEECCCCHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHEE TDSAYNGYECLEMWERGHYDMIFMDVQMPKMSGLDTIRKLREIERARGLHRTPVVVISAN CCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECC SFTEDIEKSLMAGADQHCGKPVRKQTVLEIVQKYCSEDIETAPANS CHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301; 12176318 [H]