| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522104
Identifier: 42522104
GI number: 42522104
Start: 463565
End: 465409
Strand: Direct
Name: 42522104
Synonym: Bd0498
Alternate gene names: NA
Gene position: 463565-465409 (Clockwise)
Preceding gene: 42522102
Following gene: 42522105
Centisome position: 12.25
GC content: 51.49
Gene sequence:
>1845_bases GTGAACAGCTTGATTTCATCTTTGGTCGTCATCTTATTTTTCCAAACTGCTATTGCACAAGAGGCAGCACAGCCCACCCC TCCGGCGGCGGCTCCAGTCGCGGCTTCTGCGGAGACTCCTGAAAAAGCCGAGAAAAAAGAAACAGAGTTTTCAAGACCTC TGTTTTTTTCTGTGATGGATCAAGAGCTTAAAATCAAGAATCCCGTGGTCGAATACGATTTGAAAAAATCCAAGGGCAAG CAGCTTGAAATGGGCGGTCTGGTTTTCGACAACCAGTCGCTGTCTGCCAAAGTAGAAAACAACACACTGAATCTGACCTG GAATCATGAACTGGTTCCTGGCGGAGACGTGTCTGTGATCAATCAGCAGGGGAAAGAGTTGTGGAAGCAGCCCGTGAAGG GAACTGGCAGCTGGTCTTACTCCGGGATCCAGGAAAGCAAAGGCCCGCAGTGGAAGGACGGCGAACGATTCCGTTTCTGT CTTCGTGCGGAAGCCGGCAGGGGTTATTCGAGCATCTGTTCCCAGTGGTACGGGGTTGAGATCAAAGAAGGCAGCGTCCA AATCGGTGTGACCAAATCAGAAGCCAGCCCTCGTGTGATTTTCCAGAATGAAGAAAAGAAACTGCAGGGGGCCGAGGAAG TGGCGGTGGGAACTCCGGTTCAGTTCCTGGCGACGCTGGATTCTGATGCGACCTATGAATTCGTTTCTGAGCCAGTGGCG CCTGTGATTCGTGACATGATCGAATCTGAAAAGAAATCCGGTGATGTGACCCTGACCGGGGATCTGCCGAAGCCATTGAA GCTGGAATCCGAAAGTATTGCCGGCGAAGACTATGGTGCTGTGACTAAAATACTGGGCTTTGAAAGCACGATCGGGGCCC GCGCCGACATGTGGAAAGCGGATGTGCCTCAGAAAAACGCCCGCCTGACATTGCCGGGAAAATCCGGTGGGGTGTTTGTC TATAATCTGGAGATCACCGAACCACCTCGTCAGAAGGACCGCCGATTTATTTCCACGCGTGCACTGAAGGGCACTTATCT TTCCAAGGATCAGATGCCGGTACGTGATATGGAAGACAACGTGACGGTCTGGAACTTTGAAACTCCTCAGAAGTTTGCGA TGAACACGGTGACACTGGATGTGCCGGGTGAAAAGTCCACGCACAAATCTTATCTGGAAATCTATCGTGCCGGTGCTGGT GAGGCCAGTTTGCGCCTGACCGGAGTTGTGACCAGTGAATCTGACTATGTGATTCTGGGGGAAGGCCACGTTTCCTGGTG GTTTAACGATCTGTTTGGCTGGCAGAACTATTGGTTGTCGAAACAGCGCTGGGGTGTGAGTGCCAAGTACTTCACGTCCC TGACGAATCTTCCAGCCTCCACCGCAGGCGGGAATTCAGAAGATGTGAAGCTGGCGGTGATGGATGCGGATTTGCGTTAT CGTTTTACCCCGGGCCTGTGGGAAAAAGATGAAACCGTGGGGCTGATTGTGGCTTATGAGGCGATGACTTTGGGGGACAG CAATGTTCCGAAGATCGGTGCGGGTCTGTTCTGGGCGCGCTCCATGCCGCGGGCGATTGACTATTGGTTCTCTAAAATTC CATTCATGAACTATCCAAAATGGGTGGACATGGAATTCATCAAGTATTTCTCTTCCACTGACAGCGATATCACCTTGGGT GATGACTATGTGCTGAACTTCCACGGCAAGGTGTTGTGGACTCCGCGTTTCTTTGGTGAAGCCGGGTTTGGCTTGAAGAA CTATTATTATGAAAAGAACTCTGACGGCTCGGGTGCGAAACTGACCACCTTCTATGGCACTGTCGGGTTGGGTGTGAACT TCTAA
Upstream 100 bases:
>100_bases CTAGCCCTAGCACTAAGTCTTAAGTGCTCTGATTTAAAGGACTTATTCATGTTTATTAGATTATTCTTAGTGTTAACGAA ATTTTGCATAAGGAACATCT
Downstream 100 bases:
>100_bases CCCACGGGTAGAATGAAAAAGAAGCTGACCTTTGTCCATTTATTCCTGCTGAATCAGCTGGTGACAACCCTGGTGCTTTT GACAGTGCTGGGGGTGTATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 614; Mature: 614
Protein sequence:
>614_residues MNSLISSLVVILFFQTAIAQEAAQPTPPAAAPVAASAETPEKAEKKETEFSRPLFFSVMDQELKIKNPVVEYDLKKSKGK QLEMGGLVFDNQSLSAKVENNTLNLTWNHELVPGGDVSVINQQGKELWKQPVKGTGSWSYSGIQESKGPQWKDGERFRFC LRAEAGRGYSSICSQWYGVEIKEGSVQIGVTKSEASPRVIFQNEEKKLQGAEEVAVGTPVQFLATLDSDATYEFVSEPVA PVIRDMIESEKKSGDVTLTGDLPKPLKLESESIAGEDYGAVTKILGFESTIGARADMWKADVPQKNARLTLPGKSGGVFV YNLEITEPPRQKDRRFISTRALKGTYLSKDQMPVRDMEDNVTVWNFETPQKFAMNTVTLDVPGEKSTHKSYLEIYRAGAG EASLRLTGVVTSESDYVILGEGHVSWWFNDLFGWQNYWLSKQRWGVSAKYFTSLTNLPASTAGGNSEDVKLAVMDADLRY RFTPGLWEKDETVGLIVAYEAMTLGDSNVPKIGAGLFWARSMPRAIDYWFSKIPFMNYPKWVDMEFIKYFSSTDSDITLG DDYVLNFHGKVLWTPRFFGEAGFGLKNYYYEKNSDGSGAKLTTFYGTVGLGVNF
Sequences:
>Translated_614_residues MNSLISSLVVILFFQTAIAQEAAQPTPPAAAPVAASAETPEKAEKKETEFSRPLFFSVMDQELKIKNPVVEYDLKKSKGK QLEMGGLVFDNQSLSAKVENNTLNLTWNHELVPGGDVSVINQQGKELWKQPVKGTGSWSYSGIQESKGPQWKDGERFRFC LRAEAGRGYSSICSQWYGVEIKEGSVQIGVTKSEASPRVIFQNEEKKLQGAEEVAVGTPVQFLATLDSDATYEFVSEPVA PVIRDMIESEKKSGDVTLTGDLPKPLKLESESIAGEDYGAVTKILGFESTIGARADMWKADVPQKNARLTLPGKSGGVFV YNLEITEPPRQKDRRFISTRALKGTYLSKDQMPVRDMEDNVTVWNFETPQKFAMNTVTLDVPGEKSTHKSYLEIYRAGAG EASLRLTGVVTSESDYVILGEGHVSWWFNDLFGWQNYWLSKQRWGVSAKYFTSLTNLPASTAGGNSEDVKLAVMDADLRY RFTPGLWEKDETVGLIVAYEAMTLGDSNVPKIGAGLFWARSMPRAIDYWFSKIPFMNYPKWVDMEFIKYFSSTDSDITLG DDYVLNFHGKVLWTPRFFGEAGFGLKNYYYEKNSDGSGAKLTTFYGTVGLGVNF >Mature_614_residues MNSLISSLVVILFFQTAIAQEAAQPTPPAAAPVAASAETPEKAEKKETEFSRPLFFSVMDQELKIKNPVVEYDLKKSKGK QLEMGGLVFDNQSLSAKVENNTLNLTWNHELVPGGDVSVINQQGKELWKQPVKGTGSWSYSGIQESKGPQWKDGERFRFC LRAEAGRGYSSICSQWYGVEIKEGSVQIGVTKSEASPRVIFQNEEKKLQGAEEVAVGTPVQFLATLDSDATYEFVSEPVA PVIRDMIESEKKSGDVTLTGDLPKPLKLESESIAGEDYGAVTKILGFESTIGARADMWKADVPQKNARLTLPGKSGGVFV YNLEITEPPRQKDRRFISTRALKGTYLSKDQMPVRDMEDNVTVWNFETPQKFAMNTVTLDVPGEKSTHKSYLEIYRAGAG EASLRLTGVVTSESDYVILGEGHVSWWFNDLFGWQNYWLSKQRWGVSAKYFTSLTNLPASTAGGNSEDVKLAVMDADLRY RFTPGLWEKDETVGLIVAYEAMTLGDSNVPKIGAGLFWARSMPRAIDYWFSKIPFMNYPKWVDMEFIKYFSSTDSDITLG DDYVLNFHGKVLWTPRFFGEAGFGLKNYYYEKNSDGSGAKLTTFYGTVGLGVNF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68366; Mature: 68366
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSLISSLVVILFFQTAIAQEAAQPTPPAAAPVAASAETPEKAEKKETEFSRPLFFSVMD CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECC QELKIKNPVVEYDLKKSKGKQLEMGGLVFDNQSLSAKVENNTLNLTWNHELVPGGDVSVI CCCCCCCCEEEEECCCCCCCEEEECCEEECCCCCEEEEECCEEEEEECCEECCCCCEEHE NQQGKELWKQPVKGTGSWSYSGIQESKGPQWKDGERFRFCLRAEAGRGYSSICSQWYGVE HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCE IKEGSVQIGVTKSEASPRVIFQNEEKKLQGAEEVAVGTPVQFLATLDSDATYEFVSEPVA EECCCEEEEEEECCCCCEEEEECCHHHHCCCHHHCCCCCCEEEEECCCCCCHHHHHCCHH PVIRDMIESEKKSGDVTLTGDLPKPLKLESESIAGEDYGAVTKILGFESTIGARADMWKA HHHHHHHHHHHCCCCEEEECCCCCCCEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC DVPQKNARLTLPGKSGGVFVYNLEITEPPRQKDRRFISTRALKGTYLSKDQMPVRDMEDN CCCCCCCEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCC VTVWNFETPQKFAMNTVTLDVPGEKSTHKSYLEIYRAGAGEASLRLTGVVTSESDYVILG EEEEECCCCHHHEEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEE EGHVSWWFNDLFGWQNYWLSKQRWGVSAKYFTSLTNLPASTAGGNSEDVKLAVMDADLRY CCCEEEHHHHHCCHHHHCCCHHHCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEE RFTPGLWEKDETVGLIVAYEAMTLGDSNVPKIGAGLFWARSMPRAIDYWFSKIPFMNYPK EECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCCCCC WVDMEFIKYFSSTDSDITLGDDYVLNFHGKVLWTPRFFGEAGFGLKNYYYEKNSDGSGAK CCCHHHHHHHCCCCCCEEECCCEEEEECCEEEECCHHCCCCCCCHHHEEEECCCCCCCCE LTTFYGTVGLGVNF EEEEEEEEECCCCC >Mature Secondary Structure MNSLISSLVVILFFQTAIAQEAAQPTPPAAAPVAASAETPEKAEKKETEFSRPLFFSVMD CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECC QELKIKNPVVEYDLKKSKGKQLEMGGLVFDNQSLSAKVENNTLNLTWNHELVPGGDVSVI CCCCCCCCEEEEECCCCCCCEEEECCEEECCCCCEEEEECCEEEEEECCEECCCCCEEHE NQQGKELWKQPVKGTGSWSYSGIQESKGPQWKDGERFRFCLRAEAGRGYSSICSQWYGVE HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCE IKEGSVQIGVTKSEASPRVIFQNEEKKLQGAEEVAVGTPVQFLATLDSDATYEFVSEPVA EECCCEEEEEEECCCCCEEEEECCHHHHCCCHHHCCCCCCEEEEECCCCCCHHHHHCCHH PVIRDMIESEKKSGDVTLTGDLPKPLKLESESIAGEDYGAVTKILGFESTIGARADMWKA HHHHHHHHHHHCCCCEEEECCCCCCCEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC DVPQKNARLTLPGKSGGVFVYNLEITEPPRQKDRRFISTRALKGTYLSKDQMPVRDMEDN CCCCCCCEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCC VTVWNFETPQKFAMNTVTLDVPGEKSTHKSYLEIYRAGAGEASLRLTGVVTSESDYVILG EEEEECCCCHHHEEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEE EGHVSWWFNDLFGWQNYWLSKQRWGVSAKYFTSLTNLPASTAGGNSEDVKLAVMDADLRY CCCEEEHHHHHCCHHHHCCCHHHCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEE RFTPGLWEKDETVGLIVAYEAMTLGDSNVPKIGAGLFWARSMPRAIDYWFSKIPFMNYPK EECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCCCCC WVDMEFIKYFSSTDSDITLGDDYVLNFHGKVLWTPRFFGEAGFGLKNYYYEKNSDGSGAK CCCHHHHHHHCCCCCCEEECCCEEEEECCEEEECCHHCCCCCCCHHHEEEECCCCCCCCE LTTFYGTVGLGVNF EEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA