| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is asd [H]
Identifier: 42522092
GI number: 42522092
Start: 453100
End: 454080
Strand: Direct
Name: asd [H]
Synonym: Bd0484
Alternate gene names: 42522092
Gene position: 453100-454080 (Clockwise)
Preceding gene: 42522091
Following gene: 42522093
Centisome position: 11.98
GC content: 51.58
Gene sequence:
>981_bases GTGGGCGCGACCGGAATGGTCGGCCAAACCTTCATGAACATCCTGTCAGAGCGCAGTTTCCCAATTGAAGAACTGCGCCC CTTTGCTTCTGAAAACTCTCTGGGTAAGAAAATTGAACTGCAAGGTCAGCAATGGCCTTGTCAGGTATTGAAGGACGGCT GCTTTGACGGGCTGGATCTGGTTTTCTTCTCGTCCGGAGACGACATCTCGGCTGAATGGGCCCCAAAGGCCGTGGCGGCA GGGGCTTTTGCCGTAGACAACTCGGCAGCCTTCCGTATGGATCCCAACACCGTGTTGATCGTTCCTGAAGTGAACGGGGA CCTGGTGAACAAGGATTCCAAACCTCAGATCATCGCCAATCCAAATTGTTCCACCATTCAGTTGGTGGTGGCGTTGAAAC CTCTGCTTGAAAAATTCGGCCTGGAAGAAGTGCGTGTCAGCACCTACCAGGCGGTGAGTGGAGCCGGTCAGGGCGGTCAT GACGAATTGATCGAACAGACCACGAATCATCCAAAACCAACAGACCCAAAAACTTTCCCGCACACCATTTTGTTCAACTG CATTCCTCAGATTGGTTCTTTCAACGATGAAGGTTACTGCAGCGAAGAAGTGAAGATCATGAAAGAGACCCGCAAGATTT TGGGTCAAAAAGATCTTAAGGTGTCCGCATTCACCGTGCGTATCCCGGCTTTGAACGCTCACAGCGAATCGGTATGGGTG ACTTTAAACAAGTCCGTCAGTCGTGACGAAGTCATGGCGGCTTTGTCCGGGCAAGAAGGCATCGTAGTTCAGGATGAACC CAAGAAAAGCGTTTATCCTTTGGCCCGCGATGTTTCTGGCAAGGACCCGGTCTATGTGGGCCGTGTTCACCGTGACCCGG AAAATCCAAAGATGTGGCTGATGTGGGTTGTTTCAGACAACATCCGCAAAGGGGCTGCCCTGAACGGCATCCAGATCGCG GAAAAGATCTTCTTTAACTAA
Upstream 100 bases:
>100_bases AGCGTGTACGCTCCTGCATCTGTGCATGAAAGCGATCTGGTCCTCGAAGACGAGGAAGAAGAGGCGAAGAAAGATGAAAA GAAAACTTAAAGTCGGTGTG
Downstream 100 bases:
>100_bases GTGTGGAAAGGGCTGTCTCAGGACGGCCCTTTTTATTTCGACCTTGGTCGGGGCGGGGGGCATTTTTTGACTTCCGGACC TTAGCATGGTTCGATGAAAG
Product: aspartate-semialdehyde dehydrogenase
Products: NA
Alternate protein names: ASA dehydrogenase; ASADH [H]
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MGATGMVGQTFMNILSERSFPIEELRPFASENSLGKKIELQGQQWPCQVLKDGCFDGLDLVFFSSGDDISAEWAPKAVAA GAFAVDNSAAFRMDPNTVLIVPEVNGDLVNKDSKPQIIANPNCSTIQLVVALKPLLEKFGLEEVRVSTYQAVSGAGQGGH DELIEQTTNHPKPTDPKTFPHTILFNCIPQIGSFNDEGYCSEEVKIMKETRKILGQKDLKVSAFTVRIPALNAHSESVWV TLNKSVSRDEVMAALSGQEGIVVQDEPKKSVYPLARDVSGKDPVYVGRVHRDPENPKMWLMWVVSDNIRKGAALNGIQIA EKIFFN
Sequences:
>Translated_326_residues MGATGMVGQTFMNILSERSFPIEELRPFASENSLGKKIELQGQQWPCQVLKDGCFDGLDLVFFSSGDDISAEWAPKAVAA GAFAVDNSAAFRMDPNTVLIVPEVNGDLVNKDSKPQIIANPNCSTIQLVVALKPLLEKFGLEEVRVSTYQAVSGAGQGGH DELIEQTTNHPKPTDPKTFPHTILFNCIPQIGSFNDEGYCSEEVKIMKETRKILGQKDLKVSAFTVRIPALNAHSESVWV TLNKSVSRDEVMAALSGQEGIVVQDEPKKSVYPLARDVSGKDPVYVGRVHRDPENPKMWLMWVVSDNIRKGAALNGIQIA EKIFFN >Mature_325_residues GATGMVGQTFMNILSERSFPIEELRPFASENSLGKKIELQGQQWPCQVLKDGCFDGLDLVFFSSGDDISAEWAPKAVAAG AFAVDNSAAFRMDPNTVLIVPEVNGDLVNKDSKPQIIANPNCSTIQLVVALKPLLEKFGLEEVRVSTYQAVSGAGQGGHD ELIEQTTNHPKPTDPKTFPHTILFNCIPQIGSFNDEGYCSEEVKIMKETRKILGQKDLKVSAFTVRIPALNAHSESVWVT LNKSVSRDEVMAALSGQEGIVVQDEPKKSVYPLARDVSGKDPVYVGRVHRDPENPKMWLMWVVSDNIRKGAALNGIQIAE KIFFN
Specific function: Unknown
COG id: COG0136
COG function: function code E; Aspartate-semialdehyde dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aspartate-semialdehyde dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1788658, Length=327, Percent_Identity=31.8042813455657, Blast_Score=163, Evalue=2e-41, Organism=Escherichia coli, GI1789841, Length=358, Percent_Identity=27.9329608938547, Blast_Score=84, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6320362, Length=381, Percent_Identity=28.8713910761155, Blast_Score=88, Evalue=1e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000319 - InterPro: IPR012080 - InterPro: IPR005986 - InterPro: IPR016040 - InterPro: IPR000534 - InterPro: IPR012280 [H]
Pfam domain/function: PF01118 Semialdhyde_dh; PF02774 Semialdhyde_dhC [H]
EC number: =1.2.1.11 [H]
Molecular weight: Translated: 35775; Mature: 35644
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGATGMVGQTFMNILSERSFPIEELRPFASENSLGKKIELQGQQWPCQVLKDGCFDGLDL CCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCEEE VFFSSGDDISAEWAPKAVAAGAFAVDNSAAFRMDPNTVLIVPEVNGDLVNKDSKPQIIAN EEEECCCCCCCCCCCHHHHCCEEEECCCEEEEECCCEEEEEECCCCCCCCCCCCCCEEEC PNCSTIQLVVALKPLLEKFGLEEVRVSTYQAVSGAGQGGHDELIEQTTNHPKPTDPKTFP CCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCC HTILFNCIPQIGSFNDEGYCSEEVKIMKETRKILGQKDLKVSAFTVRIPALNAHSESVWV HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEE TLNKSVSRDEVMAALSGQEGIVVQDEPKKSVYPLARDVSGKDPVYVGRVHRDPENPKMWL EECCCCCHHHHHHHHCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEEEEECCCCCCCEEE MWVVSDNIRKGAALNGIQIAEKIFFN EEEEECCCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure GATGMVGQTFMNILSERSFPIEELRPFASENSLGKKIELQGQQWPCQVLKDGCFDGLDL CCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCEEE VFFSSGDDISAEWAPKAVAAGAFAVDNSAAFRMDPNTVLIVPEVNGDLVNKDSKPQIIAN EEEECCCCCCCCCCCHHHHCCEEEECCCEEEEECCCEEEEEECCCCCCCCCCCCCCEEEC PNCSTIQLVVALKPLLEKFGLEEVRVSTYQAVSGAGQGGHDELIEQTTNHPKPTDPKTFP CCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCC HTILFNCIPQIGSFNDEGYCSEEVKIMKETRKILGQKDLKVSAFTVRIPALNAHSESVWV HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEE TLNKSVSRDEVMAALSGQEGIVVQDEPKKSVYPLARDVSGKDPVYVGRVHRDPENPKMWL EECCCCCHHHHHHHHCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEEEEECCCCCCCEEE MWVVSDNIRKGAALNGIQIAEKIFFN EEEEECCCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]