| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is pssA [H]
Identifier: 42522091
GI number: 42522091
Start: 452232
End: 453089
Strand: Direct
Name: pssA [H]
Synonym: Bd0483
Alternate gene names: 42522091
Gene position: 452232-453089 (Clockwise)
Preceding gene: 42522090
Following gene: 42522092
Centisome position: 11.95
GC content: 50.0
Gene sequence:
>858_bases ATGGCTACTGATACTCATCTTGATAAAATCGAATCTGACGATGCCAAAGCTCAGCGCTTGGCGATGTACATTTATATCCT TCCAAATTTGATGACCACGGGGAATCTGTTCTGCGGTTTCTTTGCTGTCATCCAATCCATCAAAGGTAATTATCTTTTTG CTGCATACGCGATCGTGGTTGCTGCTGTCTTTGACCAGTTGGATGGCCGTCTGGCGCGTTTGACCCGCTCAACGAGTAAG TTCGGTGCTGAATACGATTCTTTGTGTGACTTGGTCAGCTTCGGTATGGCTCCGGCTACGATGCTGTTCCTGTGGGCCTT GCAGCCATTCGGTCGTCTGGGCTGGGTTGCGACCTTCCTGTTCGTAGCGTGTGGTGCGCTTCGTTTGGCGCGTTTCAACG TTCAGGCGAACGTGGTTGAAAAGAACTACTTCCAGGGTCTGCCGATTCCAATGGCGGCAGGTATCGTGGCTTCTTCTGTT CTGGCCTTCCAGGATCTGGAATTGGAACCGCTGGGCAACTACGGTTTGCTGGTGATGACTATTTTGCTGGCGTTGGTGAT GGTTTCCAACTTCCGCTTCCGCAGCTTTAAAGATCTGGATCTGAAAGAGCGTCTGCCGTTCCGTTACCTGATTCTGGGTG TCGGTGTTCTGGTTGTCGTGGCACTTCGTCCGGAAGTGATGCTGTTTGTTCTCTTCATGGCTTACGCAGTTTTGGGCGCT GTTTTCGGTGTCTTCAAACTTGGAAAAAACATCCGTAAGATCAAGCCAAGCGTGTACGCTCCTGCATCTGTGCATGAAAG CGATCTGGTCCTCGAAGACGAGGAAGAAGAGGCGAAGAAAGATGAAAAGAAAACTTAA
Upstream 100 bases:
>100_bases TTTGGATTTTTCGCAGCCGTAAGCTAATGTCGTTGAGGTTGGAGACGGGTCTTTTCCGCCACTCCAACCGCATACATTTT CTAGCTTAGGTGGACGAAAA
Downstream 100 bases:
>100_bases AGTCGGTGTGGTGGGCGCGACCGGAATGGTCGGCCAAACCTTCATGAACATCCTGTCAGAGCGCAGTTTCCCAATTGAAG AACTGCGCCCCTTTGCTTCT
Product: hypothetical protein
Products: NA
Alternate protein names: Phosphatidylserine synthase [H]
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MATDTHLDKIESDDAKAQRLAMYIYILPNLMTTGNLFCGFFAVIQSIKGNYLFAAYAIVVAAVFDQLDGRLARLTRSTSK FGAEYDSLCDLVSFGMAPATMLFLWALQPFGRLGWVATFLFVACGALRLARFNVQANVVEKNYFQGLPIPMAAGIVASSV LAFQDLELEPLGNYGLLVMTILLALVMVSNFRFRSFKDLDLKERLPFRYLILGVGVLVVVALRPEVMLFVLFMAYAVLGA VFGVFKLGKNIRKIKPSVYAPASVHESDLVLEDEEEEAKKDEKKT
Sequences:
>Translated_285_residues MATDTHLDKIESDDAKAQRLAMYIYILPNLMTTGNLFCGFFAVIQSIKGNYLFAAYAIVVAAVFDQLDGRLARLTRSTSK FGAEYDSLCDLVSFGMAPATMLFLWALQPFGRLGWVATFLFVACGALRLARFNVQANVVEKNYFQGLPIPMAAGIVASSV LAFQDLELEPLGNYGLLVMTILLALVMVSNFRFRSFKDLDLKERLPFRYLILGVGVLVVVALRPEVMLFVLFMAYAVLGA VFGVFKLGKNIRKIKPSVYAPASVHESDLVLEDEEEEAKKDEKKT >Mature_284_residues ATDTHLDKIESDDAKAQRLAMYIYILPNLMTTGNLFCGFFAVIQSIKGNYLFAAYAIVVAAVFDQLDGRLARLTRSTSKF GAEYDSLCDLVSFGMAPATMLFLWALQPFGRLGWVATFLFVACGALRLARFNVQANVVEKNYFQGLPIPMAAGIVASSVL AFQDLELEPLGNYGLLVMTILLALVMVSNFRFRSFKDLDLKERLPFRYLILGVGVLVVVALRPEVMLFVLFMAYAVLGAV FGVFKLGKNIRKIKPSVYAPASVHESDLVLEDEEEEAKKDEKKT
Specific function: Unknown
COG id: COG1183
COG function: function code I; Phosphatidylserine synthase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDP-alcohol phosphatidyltransferase class-I family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320864, Length=175, Percent_Identity=36.5714285714286, Blast_Score=85, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004533 - InterPro: IPR000462 [H]
Pfam domain/function: PF01066 CDP-OH_P_transf [H]
EC number: =2.7.8.8 [H]
Molecular weight: Translated: 31641; Mature: 31510
Theoretical pI: Translated: 7.33; Mature: 7.33
Prosite motif: PS00379 CDP_ALCOHOL_P_TRANSF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATDTHLDKIESDDAKAQRLAMYIYILPNLMTTGNLFCGFFAVIQSIKGNYLFAAYAIVV CCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH AAVFDQLDGRLARLTRSTSKFGAEYDSLCDLVSFGMAPATMLFLWALQPFGRLGWVATFL HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH FVACGALRLARFNVQANVVEKNYFQGLPIPMAAGIVASSVLAFQDLELEPLGNYGLLVMT HHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH ILLALVMVSNFRFRSFKDLDLKERLPFRYLILGVGVLVVVALRPEVMLFVLFMAYAVLGA HHHHHHHHHCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFGVFKLGKNIRKIKPSVYAPASVHESDLVLEDEEEEAKKDEKKT HHHHHHHCCHHHHHCCCCCCCCCCCCCCCEECCCHHHHHHCCCCC >Mature Secondary Structure ATDTHLDKIESDDAKAQRLAMYIYILPNLMTTGNLFCGFFAVIQSIKGNYLFAAYAIVV CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH AAVFDQLDGRLARLTRSTSKFGAEYDSLCDLVSFGMAPATMLFLWALQPFGRLGWVATFL HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH FVACGALRLARFNVQANVVEKNYFQGLPIPMAAGIVASSVLAFQDLELEPLGNYGLLVMT HHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH ILLALVMVSNFRFRSFKDLDLKERLPFRYLILGVGVLVVVALRPEVMLFVLFMAYAVLGA HHHHHHHHHCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFGVFKLGKNIRKIKPSVYAPASVHESDLVLEDEEEEAKKDEKKT HHHHHHHCCHHHHHCCCCCCCCCCCCCCCEECCCHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]