Definition Bdellovibrio bacteriovorus HD100, complete genome.
Accession NC_005363
Length 3,782,950

Click here to switch to the map view.

The map label for this gene is 42522093

Identifier: 42522093

GI number: 42522093

Start: 454083

End: 455555

Strand: Direct

Name: 42522093

Synonym: Bd0485

Alternate gene names: NA

Gene position: 454083-455555 (Clockwise)

Preceding gene: 42522092

Following gene: 42522094

Centisome position: 12.0

GC content: 52.07

Gene sequence:

>1473_bases
GTGGAAAGGGCTGTCTCAGGACGGCCCTTTTTATTTCGACCTTGGTCGGGGCGGGGGGCATTTTTTGACTTCCGGACCTT
AGCATGGTTCGATGAAAGGATGAGACTTCCATGGACGGGATTTCAGCATCATCTTAGAACTTATGCACTTTCCACCTTAG
TGGGGGGAATGCTGCTTTCTGCTCCGGCTCTGGCCACGATCACACTTGTTTCTGTGGACGGAGCTTCTCGCATTGATCTG
GCGACGACGGAAACCAAGACCACGCTGTATGCGGGTTTTGCCGGGACTTGCACCGCAGATGCAAACTCTGCCGCCACCTG
TGACAGCTGCAGTGGTGAAACGGTTTCCAGTTCAAAGCTTTGGCCGTGCAATAAGAAAAACGCCTATAACAATCTTCGTA
TCACCATCCGTGTTCAATCCAGCAACACGTCGGCGGTTTTGGCCGATGCCATCATTAAAGTGGGCGAAGACACGCTGACC
CCTTCGATCAATCCGACATTGGCTGATGGTATTTTGAATGTGCAGGTCACTTGGGGTGAGCTGTGCCAGAAGCTGGGGCA
AAGCAGTGGTTGTACCGCGGATTTCAGCGGTGAGCTGTCTGTGGGTTTTAAAACCACCACCGATTCCACGACCACCAACG
ATTTGATGACATTCAAGGTGATGGGGCGTGTGGCAAAAACCGACGGTTCCGACTGGGTCTATACCAACTGTCCGACCGAT
GACATCACAATTCCTGCGGGCTCGGGCTATTGTTATTTCAGTGCCTATCGCGGGGATGAAAAGATCTATGCCGATCAGCT
GGCGCGAGCGGATGATTACCCTGCCAGCACGGCACCGGGCATTGAATACGCTGGTCCCGTGTTTTTCTATGAAAAGCAAC
TGGATGGCGAGGACGACAACACCACCATTGCGCGCATTTCAAATGCCTCCAGTTATATCCAGTTGGTGGATCCTGAAAGA
GACAACCGCATTGACGGTCTGGAAAATGACGTCCGTTATTGCATGGTCATGGCCAATCAGGACAAGACCGGAATTGTCTC
TTATTACTCACCACTGCCAGGGACCTCGGGTGGTGTCGATGCCATCAGTCTGTGTGCAACCCCTTCCAAGGTTGTCGGCC
TTTTGGATGACAAGAGCTGCTTTATCGCCACCGCAGCCTTTGGCAGTGACATGGCCCCGGAGGTTCAAAGCTTCCGTGAT
TTCCGCAACAAATACCTTTTGAGTAATAGTGTTGGTACCAGGATTGTGAAGCTTTATTACAAGCACAGTCCGTTCTATGC
AAACTTGATCGCTAAAAATGAATTCGCGAAATCCGCAGTCCGCACGATTTTGTGGCCGCTGCTGTTTTTCGCCCGCATGA
GCGTCACTTTTGGTCTGTGGGTGACACTGCTGTTGGCCGTTCTGACAGGCGTGTCCACTTATGAGATGTACCGTCGCTTT
GTCGTCGGTCGCAAAACACGGGGTGAAGCGTGA

Upstream 100 bases:

>100_bases
ATCCAAAGATGTGGCTGATGTGGGTTGTTTCAGACAACATCCGCAAAGGGGCTGCCCTGAACGGCATCCAGATCGCGGAA
AAGATCTTCTTTAACTAAGT

Downstream 100 bases:

>100_bases
ATGCCTGGCACAAATATTTTGTAGTTCTGCTGGCTGTTGTGTCTTTCCAGGCCGCCAAGGCGCAGGAACAAGGCCCGCCA
CAAGAACCGCCGTTCATTCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 490; Mature: 490

Protein sequence:

>490_residues
MERAVSGRPFLFRPWSGRGAFFDFRTLAWFDERMRLPWTGFQHHLRTYALSTLVGGMLLSAPALATITLVSVDGASRIDL
ATTETKTTLYAGFAGTCTADANSAATCDSCSGETVSSSKLWPCNKKNAYNNLRITIRVQSSNTSAVLADAIIKVGEDTLT
PSINPTLADGILNVQVTWGELCQKLGQSSGCTADFSGELSVGFKTTTDSTTTNDLMTFKVMGRVAKTDGSDWVYTNCPTD
DITIPAGSGYCYFSAYRGDEKIYADQLARADDYPASTAPGIEYAGPVFFYEKQLDGEDDNTTIARISNASSYIQLVDPER
DNRIDGLENDVRYCMVMANQDKTGIVSYYSPLPGTSGGVDAISLCATPSKVVGLLDDKSCFIATAAFGSDMAPEVQSFRD
FRNKYLLSNSVGTRIVKLYYKHSPFYANLIAKNEFAKSAVRTILWPLLFFARMSVTFGLWVTLLLAVLTGVSTYEMYRRF
VVGRKTRGEA

Sequences:

>Translated_490_residues
MERAVSGRPFLFRPWSGRGAFFDFRTLAWFDERMRLPWTGFQHHLRTYALSTLVGGMLLSAPALATITLVSVDGASRIDL
ATTETKTTLYAGFAGTCTADANSAATCDSCSGETVSSSKLWPCNKKNAYNNLRITIRVQSSNTSAVLADAIIKVGEDTLT
PSINPTLADGILNVQVTWGELCQKLGQSSGCTADFSGELSVGFKTTTDSTTTNDLMTFKVMGRVAKTDGSDWVYTNCPTD
DITIPAGSGYCYFSAYRGDEKIYADQLARADDYPASTAPGIEYAGPVFFYEKQLDGEDDNTTIARISNASSYIQLVDPER
DNRIDGLENDVRYCMVMANQDKTGIVSYYSPLPGTSGGVDAISLCATPSKVVGLLDDKSCFIATAAFGSDMAPEVQSFRD
FRNKYLLSNSVGTRIVKLYYKHSPFYANLIAKNEFAKSAVRTILWPLLFFARMSVTFGLWVTLLLAVLTGVSTYEMYRRF
VVGRKTRGEA
>Mature_490_residues
MERAVSGRPFLFRPWSGRGAFFDFRTLAWFDERMRLPWTGFQHHLRTYALSTLVGGMLLSAPALATITLVSVDGASRIDL
ATTETKTTLYAGFAGTCTADANSAATCDSCSGETVSSSKLWPCNKKNAYNNLRITIRVQSSNTSAVLADAIIKVGEDTLT
PSINPTLADGILNVQVTWGELCQKLGQSSGCTADFSGELSVGFKTTTDSTTTNDLMTFKVMGRVAKTDGSDWVYTNCPTD
DITIPAGSGYCYFSAYRGDEKIYADQLARADDYPASTAPGIEYAGPVFFYEKQLDGEDDNTTIARISNASSYIQLVDPER
DNRIDGLENDVRYCMVMANQDKTGIVSYYSPLPGTSGGVDAISLCATPSKVVGLLDDKSCFIATAAFGSDMAPEVQSFRD
FRNKYLLSNSVGTRIVKLYYKHSPFYANLIAKNEFAKSAVRTILWPLLFFARMSVTFGLWVTLLLAVLTGVSTYEMYRRF
VVGRKTRGEA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53597; Mature: 53597

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERAVSGRPFLFRPWSGRGAFFDFRTLAWFDERMRLPWTGFQHHLRTYALSTLVGGMLLS
CCCCCCCCCEEEECCCCCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
APALATITLVSVDGASRIDLATTETKTTLYAGFAGTCTADANSAATCDSCSGETVSSSKL
CCCEEEEEEEEECCCCEEEEEECCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCC
WPCNKKNAYNNLRITIRVQSSNTSAVLADAIIKVGEDTLTPSINPTLADGILNVQVTWGE
CCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCEEEEEEEHHH
LCQKLGQSSGCTADFSGELSVGFKTTTDSTTTNDLMTFKVMGRVAKTDGSDWVYTNCPTD
HHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEHHHHHCCCCCCEEEECCCCC
DITIPAGSGYCYFSAYRGDEKIYADQLARADDYPASTAPGIEYAGPVFFYEKQLDGEDDN
CEEEECCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
TTIARISNASSYIQLVDPERDNRIDGLENDVRYCMVMANQDKTGIVSYYSPLPGTSGGVD
CEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCC
AISLCATPSKVVGLLDDKSCFIATAAFGSDMAPEVQSFRDFRNKYLLSNSVGTRIVKLYY
CEEECCCCHHHEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHEEECCCHHHEEEEEEE
KHSPFYANLIAKNEFAKSAVRTILWPLLFFARMSVTFGLWVTLLLAVLTGVSTYEMYRRF
ECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
VVGRKTRGEA
HHCCCCCCCC
>Mature Secondary Structure
MERAVSGRPFLFRPWSGRGAFFDFRTLAWFDERMRLPWTGFQHHLRTYALSTLVGGMLLS
CCCCCCCCCEEEECCCCCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
APALATITLVSVDGASRIDLATTETKTTLYAGFAGTCTADANSAATCDSCSGETVSSSKL
CCCEEEEEEEEECCCCEEEEEECCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCC
WPCNKKNAYNNLRITIRVQSSNTSAVLADAIIKVGEDTLTPSINPTLADGILNVQVTWGE
CCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCEEEEEEEHHH
LCQKLGQSSGCTADFSGELSVGFKTTTDSTTTNDLMTFKVMGRVAKTDGSDWVYTNCPTD
HHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEHHHHHCCCCCCEEEECCCCC
DITIPAGSGYCYFSAYRGDEKIYADQLARADDYPASTAPGIEYAGPVFFYEKQLDGEDDN
CEEEECCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
TTIARISNASSYIQLVDPERDNRIDGLENDVRYCMVMANQDKTGIVSYYSPLPGTSGGVD
CEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCC
AISLCATPSKVVGLLDDKSCFIATAAFGSDMAPEVQSFRDFRNKYLLSNSVGTRIVKLYY
CEEECCCCHHHEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHEEECCCHHHEEEEEEE
KHSPFYANLIAKNEFAKSAVRTILWPLLFFARMSVTFGLWVTLLLAVLTGVSTYEMYRRF
ECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
VVGRKTRGEA
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA