| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522093
Identifier: 42522093
GI number: 42522093
Start: 454083
End: 455555
Strand: Direct
Name: 42522093
Synonym: Bd0485
Alternate gene names: NA
Gene position: 454083-455555 (Clockwise)
Preceding gene: 42522092
Following gene: 42522094
Centisome position: 12.0
GC content: 52.07
Gene sequence:
>1473_bases GTGGAAAGGGCTGTCTCAGGACGGCCCTTTTTATTTCGACCTTGGTCGGGGCGGGGGGCATTTTTTGACTTCCGGACCTT AGCATGGTTCGATGAAAGGATGAGACTTCCATGGACGGGATTTCAGCATCATCTTAGAACTTATGCACTTTCCACCTTAG TGGGGGGAATGCTGCTTTCTGCTCCGGCTCTGGCCACGATCACACTTGTTTCTGTGGACGGAGCTTCTCGCATTGATCTG GCGACGACGGAAACCAAGACCACGCTGTATGCGGGTTTTGCCGGGACTTGCACCGCAGATGCAAACTCTGCCGCCACCTG TGACAGCTGCAGTGGTGAAACGGTTTCCAGTTCAAAGCTTTGGCCGTGCAATAAGAAAAACGCCTATAACAATCTTCGTA TCACCATCCGTGTTCAATCCAGCAACACGTCGGCGGTTTTGGCCGATGCCATCATTAAAGTGGGCGAAGACACGCTGACC CCTTCGATCAATCCGACATTGGCTGATGGTATTTTGAATGTGCAGGTCACTTGGGGTGAGCTGTGCCAGAAGCTGGGGCA AAGCAGTGGTTGTACCGCGGATTTCAGCGGTGAGCTGTCTGTGGGTTTTAAAACCACCACCGATTCCACGACCACCAACG ATTTGATGACATTCAAGGTGATGGGGCGTGTGGCAAAAACCGACGGTTCCGACTGGGTCTATACCAACTGTCCGACCGAT GACATCACAATTCCTGCGGGCTCGGGCTATTGTTATTTCAGTGCCTATCGCGGGGATGAAAAGATCTATGCCGATCAGCT GGCGCGAGCGGATGATTACCCTGCCAGCACGGCACCGGGCATTGAATACGCTGGTCCCGTGTTTTTCTATGAAAAGCAAC TGGATGGCGAGGACGACAACACCACCATTGCGCGCATTTCAAATGCCTCCAGTTATATCCAGTTGGTGGATCCTGAAAGA GACAACCGCATTGACGGTCTGGAAAATGACGTCCGTTATTGCATGGTCATGGCCAATCAGGACAAGACCGGAATTGTCTC TTATTACTCACCACTGCCAGGGACCTCGGGTGGTGTCGATGCCATCAGTCTGTGTGCAACCCCTTCCAAGGTTGTCGGCC TTTTGGATGACAAGAGCTGCTTTATCGCCACCGCAGCCTTTGGCAGTGACATGGCCCCGGAGGTTCAAAGCTTCCGTGAT TTCCGCAACAAATACCTTTTGAGTAATAGTGTTGGTACCAGGATTGTGAAGCTTTATTACAAGCACAGTCCGTTCTATGC AAACTTGATCGCTAAAAATGAATTCGCGAAATCCGCAGTCCGCACGATTTTGTGGCCGCTGCTGTTTTTCGCCCGCATGA GCGTCACTTTTGGTCTGTGGGTGACACTGCTGTTGGCCGTTCTGACAGGCGTGTCCACTTATGAGATGTACCGTCGCTTT GTCGTCGGTCGCAAAACACGGGGTGAAGCGTGA
Upstream 100 bases:
>100_bases ATCCAAAGATGTGGCTGATGTGGGTTGTTTCAGACAACATCCGCAAAGGGGCTGCCCTGAACGGCATCCAGATCGCGGAA AAGATCTTCTTTAACTAAGT
Downstream 100 bases:
>100_bases ATGCCTGGCACAAATATTTTGTAGTTCTGCTGGCTGTTGTGTCTTTCCAGGCCGCCAAGGCGCAGGAACAAGGCCCGCCA CAAGAACCGCCGTTCATTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 490; Mature: 490
Protein sequence:
>490_residues MERAVSGRPFLFRPWSGRGAFFDFRTLAWFDERMRLPWTGFQHHLRTYALSTLVGGMLLSAPALATITLVSVDGASRIDL ATTETKTTLYAGFAGTCTADANSAATCDSCSGETVSSSKLWPCNKKNAYNNLRITIRVQSSNTSAVLADAIIKVGEDTLT PSINPTLADGILNVQVTWGELCQKLGQSSGCTADFSGELSVGFKTTTDSTTTNDLMTFKVMGRVAKTDGSDWVYTNCPTD DITIPAGSGYCYFSAYRGDEKIYADQLARADDYPASTAPGIEYAGPVFFYEKQLDGEDDNTTIARISNASSYIQLVDPER DNRIDGLENDVRYCMVMANQDKTGIVSYYSPLPGTSGGVDAISLCATPSKVVGLLDDKSCFIATAAFGSDMAPEVQSFRD FRNKYLLSNSVGTRIVKLYYKHSPFYANLIAKNEFAKSAVRTILWPLLFFARMSVTFGLWVTLLLAVLTGVSTYEMYRRF VVGRKTRGEA
Sequences:
>Translated_490_residues MERAVSGRPFLFRPWSGRGAFFDFRTLAWFDERMRLPWTGFQHHLRTYALSTLVGGMLLSAPALATITLVSVDGASRIDL ATTETKTTLYAGFAGTCTADANSAATCDSCSGETVSSSKLWPCNKKNAYNNLRITIRVQSSNTSAVLADAIIKVGEDTLT PSINPTLADGILNVQVTWGELCQKLGQSSGCTADFSGELSVGFKTTTDSTTTNDLMTFKVMGRVAKTDGSDWVYTNCPTD DITIPAGSGYCYFSAYRGDEKIYADQLARADDYPASTAPGIEYAGPVFFYEKQLDGEDDNTTIARISNASSYIQLVDPER DNRIDGLENDVRYCMVMANQDKTGIVSYYSPLPGTSGGVDAISLCATPSKVVGLLDDKSCFIATAAFGSDMAPEVQSFRD FRNKYLLSNSVGTRIVKLYYKHSPFYANLIAKNEFAKSAVRTILWPLLFFARMSVTFGLWVTLLLAVLTGVSTYEMYRRF VVGRKTRGEA >Mature_490_residues MERAVSGRPFLFRPWSGRGAFFDFRTLAWFDERMRLPWTGFQHHLRTYALSTLVGGMLLSAPALATITLVSVDGASRIDL ATTETKTTLYAGFAGTCTADANSAATCDSCSGETVSSSKLWPCNKKNAYNNLRITIRVQSSNTSAVLADAIIKVGEDTLT PSINPTLADGILNVQVTWGELCQKLGQSSGCTADFSGELSVGFKTTTDSTTTNDLMTFKVMGRVAKTDGSDWVYTNCPTD DITIPAGSGYCYFSAYRGDEKIYADQLARADDYPASTAPGIEYAGPVFFYEKQLDGEDDNTTIARISNASSYIQLVDPER DNRIDGLENDVRYCMVMANQDKTGIVSYYSPLPGTSGGVDAISLCATPSKVVGLLDDKSCFIATAAFGSDMAPEVQSFRD FRNKYLLSNSVGTRIVKLYYKHSPFYANLIAKNEFAKSAVRTILWPLLFFARMSVTFGLWVTLLLAVLTGVSTYEMYRRF VVGRKTRGEA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53597; Mature: 53597
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERAVSGRPFLFRPWSGRGAFFDFRTLAWFDERMRLPWTGFQHHLRTYALSTLVGGMLLS CCCCCCCCCEEEECCCCCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC APALATITLVSVDGASRIDLATTETKTTLYAGFAGTCTADANSAATCDSCSGETVSSSKL CCCEEEEEEEEECCCCEEEEEECCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCC WPCNKKNAYNNLRITIRVQSSNTSAVLADAIIKVGEDTLTPSINPTLADGILNVQVTWGE CCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCEEEEEEEHHH LCQKLGQSSGCTADFSGELSVGFKTTTDSTTTNDLMTFKVMGRVAKTDGSDWVYTNCPTD HHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEHHHHHCCCCCCEEEECCCCC DITIPAGSGYCYFSAYRGDEKIYADQLARADDYPASTAPGIEYAGPVFFYEKQLDGEDDN CEEEECCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC TTIARISNASSYIQLVDPERDNRIDGLENDVRYCMVMANQDKTGIVSYYSPLPGTSGGVD CEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCC AISLCATPSKVVGLLDDKSCFIATAAFGSDMAPEVQSFRDFRNKYLLSNSVGTRIVKLYY CEEECCCCHHHEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHEEECCCHHHEEEEEEE KHSPFYANLIAKNEFAKSAVRTILWPLLFFARMSVTFGLWVTLLLAVLTGVSTYEMYRRF ECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH VVGRKTRGEA HHCCCCCCCC >Mature Secondary Structure MERAVSGRPFLFRPWSGRGAFFDFRTLAWFDERMRLPWTGFQHHLRTYALSTLVGGMLLS CCCCCCCCCEEEECCCCCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC APALATITLVSVDGASRIDLATTETKTTLYAGFAGTCTADANSAATCDSCSGETVSSSKL CCCEEEEEEEEECCCCEEEEEECCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCC WPCNKKNAYNNLRITIRVQSSNTSAVLADAIIKVGEDTLTPSINPTLADGILNVQVTWGE CCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCEEEEEEEHHH LCQKLGQSSGCTADFSGELSVGFKTTTDSTTTNDLMTFKVMGRVAKTDGSDWVYTNCPTD HHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEHHHHHCCCCCCEEEECCCCC DITIPAGSGYCYFSAYRGDEKIYADQLARADDYPASTAPGIEYAGPVFFYEKQLDGEDDN CEEEECCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC TTIARISNASSYIQLVDPERDNRIDGLENDVRYCMVMANQDKTGIVSYYSPLPGTSGGVD CEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCC AISLCATPSKVVGLLDDKSCFIATAAFGSDMAPEVQSFRDFRNKYLLSNSVGTRIVKLYY CEEECCCCHHHEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHEEECCCHHHEEEEEEE KHSPFYANLIAKNEFAKSAVRTILWPLLFFARMSVTFGLWVTLLLAVLTGVSTYEMYRRF ECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH VVGRKTRGEA HHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA