| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is 42522063
Identifier: 42522063
GI number: 42522063
Start: 426516
End: 427295
Strand: Direct
Name: 42522063
Synonym: Bd0454
Alternate gene names: NA
Gene position: 426516-427295 (Clockwise)
Preceding gene: 42522062
Following gene: 42522064
Centisome position: 11.27
GC content: 51.15
Gene sequence:
>780_bases ATGAGCAAGAAATCAGCTTTGATTCTATCCCTTGTTGCCGCCGTATTATTGATTTTTACCTTCTGCCATTTTTATGGCGA CTCACCTGATGAGGCCGCTGAAGAAACGCTTCGTGTTCAGGACGCCACTGGTGTACCTGCCGAAGCTGTTGCTCCACCAG TGAAGGCGGAGCCCCCTCCGGTGGATGTCAGCGCGGCTCCTCCTTCCACCGGTTTTCTTCCGACAGAAATGGAAGAGCCA GGAAAGTTCGCAGCCTACCAGCAAAAGTTAAAAGAGATGGCTGTATGTCTGAACATGCAGATGAATGCGCTGGATCCCAA CGTCGAAATCAATTTTGAAACTTTCAATCAGGTCATCAATCCGGACCTCGGTGAAGTTGTCACGCAGTCGGAAGAATGGA CAGCGACGGACATTCGCACTAAAAATGGCGAGCTTCGCCGTATTTACATCGAAAACGGGCCGAGTATCGAGGCAGAGTCC TCGCGCACCTTGAAGTATGAGGCTTTTTCTCAGGATGGCACTTCCAAGTCCCTGCCTCTTTCCAAAGAGCAGACGTCCAA CCCATCCGACGCTCTGGTGGCGAGCCTGGAGGCGGATGGCGAAGTCGTCAGTCGTTCCGTCTCCCGCCGTATTTTTTATT CAAATGGGGATGATCTTTTGCTGGTTGAAAAGAACGGAAAGATTTTTTCTTTTGAACTGACCCATGACGGGGCGACGTTC CGCTGCAGTGGAGCTGACAAGTCCTCGACATTCCAGTGTCAGTGTCGCAACAATCCTTAG
Upstream 100 bases:
>100_bases GAATTTGATATTTTGCAGGTTCGCTTTAACTTTAAAGGAATTTCCCTGCCGCAGTTTGTACCCATTGACGTCGCTGTTGA TATCAGTCGATAAATAAGGG
Downstream 100 bases:
>100_bases GGGGAATCATGGAAACAAATGAACTGCATCGAGGGCGTCTGATTGATCACTTGCAGCTGGTGGTGAAGGATTTGGATAAA ACGAAAAGGTTTTATTCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MSKKSALILSLVAAVLLIFTFCHFYGDSPDEAAEETLRVQDATGVPAEAVAPPVKAEPPPVDVSAAPPSTGFLPTEMEEP GKFAAYQQKLKEMAVCLNMQMNALDPNVEINFETFNQVINPDLGEVVTQSEEWTATDIRTKNGELRRIYIENGPSIEAES SRTLKYEAFSQDGTSKSLPLSKEQTSNPSDALVASLEADGEVVSRSVSRRIFYSNGDDLLLVEKNGKIFSFELTHDGATF RCSGADKSSTFQCQCRNNP
Sequences:
>Translated_259_residues MSKKSALILSLVAAVLLIFTFCHFYGDSPDEAAEETLRVQDATGVPAEAVAPPVKAEPPPVDVSAAPPSTGFLPTEMEEP GKFAAYQQKLKEMAVCLNMQMNALDPNVEINFETFNQVINPDLGEVVTQSEEWTATDIRTKNGELRRIYIENGPSIEAES SRTLKYEAFSQDGTSKSLPLSKEQTSNPSDALVASLEADGEVVSRSVSRRIFYSNGDDLLLVEKNGKIFSFELTHDGATF RCSGADKSSTFQCQCRNNP >Mature_258_residues SKKSALILSLVAAVLLIFTFCHFYGDSPDEAAEETLRVQDATGVPAEAVAPPVKAEPPPVDVSAAPPSTGFLPTEMEEPG KFAAYQQKLKEMAVCLNMQMNALDPNVEINFETFNQVINPDLGEVVTQSEEWTATDIRTKNGELRRIYIENGPSIEAESS RTLKYEAFSQDGTSKSLPLSKEQTSNPSDALVASLEADGEVVSRSVSRRIFYSNGDDLLLVEKNGKIFSFELTHDGATFR CSGADKSSTFQCQCRNNP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28268; Mature: 28137
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKSALILSLVAAVLLIFTFCHFYGDSPDEAAEETLRVQDATGVPAEAVAPPVKAEPPP CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCCCHHHCCCCCCCCCCC VDVSAAPPSTGFLPTEMEEPGKFAAYQQKLKEMAVCLNMQMNALDPNVEINFETFNQVIN CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCCEEEEHHHHHHHHC PDLGEVVTQSEEWTATDIRTKNGELRRIYIENGPSIEAESSRTLKYEAFSQDGTSKSLPL CCHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCC SKEQTSNPSDALVASLEADGEVVSRSVSRRIFYSNGDDLLLVEKNGKIFSFELTHDGATF CHHCCCCCHHHEEEECCCCHHHHHHHHHCEEEEECCCEEEEEECCCCEEEEEEECCCCEE RCSGADKSSTFQCQCRNNP EECCCCCCCEEEEEECCCC >Mature Secondary Structure SKKSALILSLVAAVLLIFTFCHFYGDSPDEAAEETLRVQDATGVPAEAVAPPVKAEPPP CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCCCHHHCCCCCCCCCCC VDVSAAPPSTGFLPTEMEEPGKFAAYQQKLKEMAVCLNMQMNALDPNVEINFETFNQVIN CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCCEEEEHHHHHHHHC PDLGEVVTQSEEWTATDIRTKNGELRRIYIENGPSIEAESSRTLKYEAFSQDGTSKSLPL CCHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCC SKEQTSNPSDALVASLEADGEVVSRSVSRRIFYSNGDDLLLVEKNGKIFSFELTHDGATF CHHCCCCCHHHEEEECCCCHHHHHHHHHCEEEEECCCEEEEEECCCCEEEEEEECCCCEE RCSGADKSSTFQCQCRNNP EECCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA