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The map label for this gene is yebA [H]

Identifier: 42522012

GI number: 42522012

Start: 375780

End: 376784

Strand: Direct

Name: yebA [H]

Synonym: Bd0398

Alternate gene names: 42522012

Gene position: 375780-376784 (Clockwise)

Preceding gene: 42522011

Following gene: 42522014

Centisome position: 9.93

GC content: 50.45

Gene sequence:

>1005_bases
TTGGATAAAAAGAAGGTCACGCTGTTTATTGTGAGCAATCAGACGGGGAAAACCCGTAAGCTTGTGCTCTCGGCTGCCTG
GCTTAAAGCCATTTCCTTTATTTCCGCCATCGTTATCATCATTTTTGCCGCCGGTCTGGTGGATTACTTCGGTCTGCTTT
TGCAGGCCATGGAAAACAAACGTCTTAAAGCTGAAAATGCGCAGCTGATCAAACAGTTTCAGGTGGTTGAAAGTAAAGTC
AGCGCCTTGGAAAACTCTTTGGAGCGTGTGAAGACCTTCACCACCAAATTGAAATTGATCACCAACGTCGATGCCGACGA
CCGTATCACCAAGCTGACCATGGGTCCGAAGCCTGCTGCCGGGCAGCCGGTGGAAGAATACGAACCGATGGAGCAGCGTG
AAAGCACGGATGTCCTGGAAGAACAGGATCAGGTCTTTGCCAACAAAAAACCTTTGAACGATCAGGCGGGTGAGCTGGCC
AACGAAAATGCGGATAAGGACTATGCCTCTTTGGTGGTTCGTATCGACAAGGCCGTGAAAGAAACCCAGTTGAAAGAACA
AAGTGTCATCGATCTTTGGGAAAGTCTTTCCGAGCGCCAGAGCTTGCTGAATTCCACGCCGAACATGAAGCCAGCCAAGG
GTTGGATCACTTCACGCTTCGGTTATCGTATTTCTCCGTTCACCGGCAAAACAGCTTTGCACGCGGGTCTGGACATTGCG
GCAGCGCCGGGTTCACCGGTGTATGCTCCGGCTGATGGCGTGGTGGTCTTTGCCAGCTACGATGAATCCTACGGTAAACT
GATCACCATCGATTACGGTTATGGCGTGACGACTCGTTTCGGTCACTTGTCACAGATCTATGTTCAAGTCGGTCAGCGGG
TGAATAAGTGGGATGTTGTGGGTGCGGTAGGTAATACCGGGCGTTCAACAGGACCGCACTTGCACTATGAAGTCCGCATT
AATGGTACCGCCGTAGATCCAATCAACTACATCTTAGACGAATAG

Upstream 100 bases:

>100_bases
GTGGAGATGACAACGTCACAGTGATGCTGGTGCATTTCCACGAATAATTGTGAATAGTTACTGATAGTTTTAGCGAAGAT
ATCTAAGTAGGGGTCAAGGT

Downstream 100 bases:

>100_bases
ACCGGAACCGTTGAAAAAGGCCCATCCGACTGCGTTGCCTTGCGGCTGGACCTTTTTGAACGGTTCCTTGTTCTTGGTTT
TGGCAAATATCATGGAAAAT

Product: cell wall-binding protein associated metalloendopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MDKKKVTLFIVSNQTGKTRKLVLSAAWLKAISFISAIVIIIFAAGLVDYFGLLLQAMENKRLKAENAQLIKQFQVVESKV
SALENSLERVKTFTTKLKLITNVDADDRITKLTMGPKPAAGQPVEEYEPMEQRESTDVLEEQDQVFANKKPLNDQAGELA
NENADKDYASLVVRIDKAVKETQLKEQSVIDLWESLSERQSLLNSTPNMKPAKGWITSRFGYRISPFTGKTALHAGLDIA
AAPGSPVYAPADGVVVFASYDESYGKLITIDYGYGVTTRFGHLSQIYVQVGQRVNKWDVVGAVGNTGRSTGPHLHYEVRI
NGTAVDPINYILDE

Sequences:

>Translated_334_residues
MDKKKVTLFIVSNQTGKTRKLVLSAAWLKAISFISAIVIIIFAAGLVDYFGLLLQAMENKRLKAENAQLIKQFQVVESKV
SALENSLERVKTFTTKLKLITNVDADDRITKLTMGPKPAAGQPVEEYEPMEQRESTDVLEEQDQVFANKKPLNDQAGELA
NENADKDYASLVVRIDKAVKETQLKEQSVIDLWESLSERQSLLNSTPNMKPAKGWITSRFGYRISPFTGKTALHAGLDIA
AAPGSPVYAPADGVVVFASYDESYGKLITIDYGYGVTTRFGHLSQIYVQVGQRVNKWDVVGAVGNTGRSTGPHLHYEVRI
NGTAVDPINYILDE
>Mature_334_residues
MDKKKVTLFIVSNQTGKTRKLVLSAAWLKAISFISAIVIIIFAAGLVDYFGLLLQAMENKRLKAENAQLIKQFQVVESKV
SALENSLERVKTFTTKLKLITNVDADDRITKLTMGPKPAAGQPVEEYEPMEQRESTDVLEEQDQVFANKKPLNDQAGELA
NENADKDYASLVVRIDKAVKETQLKEQSVIDLWESLSERQSLLNSTPNMKPAKGWITSRFGYRISPFTGKTALHAGLDIA
AAPGSPVYAPADGVVVFASYDESYGKLITIDYGYGVTTRFGHLSQIYVQVGQRVNKWDVVGAVGNTGRSTGPHLHYEVRI
NGTAVDPINYILDE

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=114, Percent_Identity=47.3684210526316, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87082297, Length=92, Percent_Identity=33.695652173913, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082174, Length=120, Percent_Identity=30, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 36915; Mature: 36915

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKKVTLFIVSNQTGKTRKLVLSAAWLKAISFISAIVIIIFAAGLVDYFGLLLQAMENK
CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RLKAENAQLIKQFQVVESKVSALENSLERVKTFTTKLKLITNVDADDRITKLTMGPKPAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCCCC
GQPVEEYEPMEQRESTDVLEEQDQVFANKKPLNDQAGELANENADKDYASLVVRIDKAVK
CCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHH
ETQLKEQSVIDLWESLSERQSLLNSTPNMKPAKGWITSRFGYRISPFTGKTALHAGLDIA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCEECCCCCCHHHHCCCEEE
AAPGSPVYAPADGVVVFASYDESYGKLITIDYGYGVTTRFGHLSQIYVQVGQRVNKWDVV
ECCCCCCEECCCCEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEE
GAVGNTGRSTGPHLHYEVRINGTAVDPINYILDE
ECCCCCCCCCCCEEEEEEEECCEEECHHHHHHCC
>Mature Secondary Structure
MDKKKVTLFIVSNQTGKTRKLVLSAAWLKAISFISAIVIIIFAAGLVDYFGLLLQAMENK
CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RLKAENAQLIKQFQVVESKVSALENSLERVKTFTTKLKLITNVDADDRITKLTMGPKPAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCCCC
GQPVEEYEPMEQRESTDVLEEQDQVFANKKPLNDQAGELANENADKDYASLVVRIDKAVK
CCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHH
ETQLKEQSVIDLWESLSERQSLLNSTPNMKPAKGWITSRFGYRISPFTGKTALHAGLDIA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCEECCCCCCHHHHCCCEEE
AAPGSPVYAPADGVVVFASYDESYGKLITIDYGYGVTTRFGHLSQIYVQVGQRVNKWDVV
ECCCCCCEECCCCEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEE
GAVGNTGRSTGPHLHYEVRINGTAVDPINYILDE
ECCCCCCCCCCCEEEEEEEECCEEECHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]