| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is prpC [H]
Identifier: 42522011
GI number: 42522011
Start: 374962
End: 375726
Strand: Direct
Name: prpC [H]
Synonym: Bd0397
Alternate gene names: 42522011
Gene position: 374962-375726 (Clockwise)
Preceding gene: 42522002
Following gene: 42522012
Centisome position: 9.91
GC content: 49.54
Gene sequence:
>765_bases TTGACTCTTCTGTCGGTAGTGGGTGAAAATGATACAACTATGAAATTTGACTCGTGGTATCTGACAGATAAAGGTCTTCG TCGTGATTCGAACCAGGATTCCTGCCTTATTAACCGGGAACTGGGATTATTCATTGTGGCGGATGGAATGGGCGGCCATA TGGGCGGGGAAGTCGCTTCCAGCATGGCTGTGGAGACGGTTGAAGAAATCATGCTTCAGCCAGAAGCCACAAGAAAATCA CCGCGCGAAGTGATTTTGCAAGCCTATGAAGAGGCTTCAAAACGCATTTTTGACAAGGCTGCCAATGAACGCCCCGAGCT TGCCGGTATGGGCACCACGATGGTGATGGCCTACATCCGCGGCAAACATCTTTATGTCGGAAACGTCGGTGATTCCCGCT GCTATTTGTTCAAGCGTCCGAACCTGTGGCAGATCACGGAAGATCATTCCCTGATCAATGAGCAGCTGCGGGCCGGCGTG ATGAGTGAAGAGCAGGTGCGCCAGTTTGTGGGGCGAAATGTCATCACCCGCAGTGTAGGTTATGAGCGTGAAGTTTATCC GGATATCATTGAGCGCGAGATCTTCCCTGGGGAAATTTTCCTCATGTGCTCCGACGGACTTTCCGGTTTGGTGGAAGATG GAAGAATTTCTGAGATTTTAAATCAAAATACACCTGACAAAGCCGTAAAAGCCTGTGTAGAACAAGCCCTGGCAAATGGT GGAGATGACAACGTCACAGTGATGCTGGTGCATTTCCACGAATAA
Upstream 100 bases:
>100_bases TTCATAAGACCTCACCCCTTTCTATCGGTATTATGACACTTGAAATTGAGAAGATGGTGAGCTGGACTCAAAGATTGCGA CCCAAGTCTAGGGCCAGACT
Downstream 100 bases:
>100_bases TTGTGAATAGTTACTGATAGTTTTAGCGAAGATATCTAAGTAGGGGTCAAGGTTTGGATAAAAAGAAGGTCACGCTGTTT ATTGTGAGCAATCAGACGGG
Product: protein phosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 254; Mature: 253
Protein sequence:
>254_residues MTLLSVVGENDTTMKFDSWYLTDKGLRRDSNQDSCLINRELGLFIVADGMGGHMGGEVASSMAVETVEEIMLQPEATRKS PREVILQAYEEASKRIFDKAANERPELAGMGTTMVMAYIRGKHLYVGNVGDSRCYLFKRPNLWQITEDHSLINEQLRAGV MSEEQVRQFVGRNVITRSVGYEREVYPDIIEREIFPGEIFLMCSDGLSGLVEDGRISEILNQNTPDKAVKACVEQALANG GDDNVTVMLVHFHE
Sequences:
>Translated_254_residues MTLLSVVGENDTTMKFDSWYLTDKGLRRDSNQDSCLINRELGLFIVADGMGGHMGGEVASSMAVETVEEIMLQPEATRKS PREVILQAYEEASKRIFDKAANERPELAGMGTTMVMAYIRGKHLYVGNVGDSRCYLFKRPNLWQITEDHSLINEQLRAGV MSEEQVRQFVGRNVITRSVGYEREVYPDIIEREIFPGEIFLMCSDGLSGLVEDGRISEILNQNTPDKAVKACVEQALANG GDDNVTVMLVHFHE >Mature_253_residues TLLSVVGENDTTMKFDSWYLTDKGLRRDSNQDSCLINRELGLFIVADGMGGHMGGEVASSMAVETVEEIMLQPEATRKSP REVILQAYEEASKRIFDKAANERPELAGMGTTMVMAYIRGKHLYVGNVGDSRCYLFKRPNLWQITEDHSLINEQLRAGVM SEEQVRQFVGRNVITRSVGYEREVYPDIIEREIFPGEIFLMCSDGLSGLVEDGRISEILNQNTPDKAVKACVEQALANGG DDNVTVMLVHFHE
Specific function: Protein phosphatase that dephosphorylates prkC and fusA (elongation factor G). PrpC and prkC are cotranscribed, which suggests that they form a functional couple in vivo, prpC's primary role being possibly to counter the action of prkC. May be involved in
COG id: COG0631
COG function: function code T; Serine/threonine protein phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015655 - InterPro: IPR001932 - InterPro: IPR014045 [H]
Pfam domain/function: PF00481 PP2C [H]
EC number: =3.1.3.16 [H]
Molecular weight: Translated: 28444; Mature: 28313
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLLSVVGENDTTMKFDSWYLTDKGLRRDSNQDSCLINRELGLFIVADGMGGHMGGEVAS CCEEEEECCCCCEEEECCEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCHHHHH SMAVETVEEIMLQPEATRKSPREVILQAYEEASKRIFDKAANERPELAGMGTTMVMAYIR HHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC GKHLYVGNVGDSRCYLFKRPNLWQITEDHSLINEQLRAGVMSEEQVRQFVGRNVITRSVG CCEEEEECCCCCEEEEEECCCEEEEECHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCC YEREVYPDIIEREIFPGEIFLMCSDGLSGLVEDGRISEILNQNTPDKAVKACVEQALANG CCCCCCHHHHHHCCCCCEEEEEECCCCCCHHCCCHHHHHHCCCCCHHHHHHHHHHHHHCC GDDNVTVMLVHFHE CCCCEEEEEEEECC >Mature Secondary Structure TLLSVVGENDTTMKFDSWYLTDKGLRRDSNQDSCLINRELGLFIVADGMGGHMGGEVAS CEEEEECCCCCEEEECCEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCHHHHH SMAVETVEEIMLQPEATRKSPREVILQAYEEASKRIFDKAANERPELAGMGTTMVMAYIR HHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC GKHLYVGNVGDSRCYLFKRPNLWQITEDHSLINEQLRAGVMSEEQVRQFVGRNVITRSVG CCEEEEECCCCCEEEEEECCCEEEEECHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCC YEREVYPDIIEREIFPGEIFLMCSDGLSGLVEDGRISEILNQNTPDKAVKACVEQALANG CCCCCCHHHHHHCCCCCEEEEEECCCCCCHHCCCHHHHHHCCCCCHHHHHHHHHHHHHCC GDDNVTVMLVHFHE CCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9534248; 9384377 [H]