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The map label for this gene is tnpC

Identifier: 38637824

GI number: 38637824

Start: 158119

End: 159672

Strand: Direct

Name: tnpC

Synonym: PHG160

Alternate gene names: NA

Gene position: 158119-159672 (Clockwise)

Preceding gene: 38637823

Following gene: 38637825

Centisome position: 34.97

GC content: 60.88

Gene sequence:

>1554_bases
ATGCCAATCGACCCCAGCGATCTCCCCGACGACATTGAGGCCCTGAAGGCCTTGGTGTTGGCACAGCGGGAATCGATCGC
ACTCATGGAACGGGCCTTGGCGGTCCGCTCCATGGAGATCGAGCAGCTAAATCTGCAGATCTCAAAGCTGAGGCGGATGC
AGTTTGGCCAGAAGTCCGAGAAGCTGGATCGACAGATTGAACAGCTCGAGACCCGACTGGAAGATCTGCTGGCCGAGGAA
GGTGCGGCCGAAACCGAAGCCGATCCGCAGGCTACCCCTCCTGTCCGGAAGAAAGCGGTACGCAAGCCGTTGCCGGAGCA
CCTGGAGCGGGAGGAGCGCATTCTCGAGCCCGAGACCGAAGCCTGTCCAGAGTGCGGCGGTAAGCTCAAGCCGCTGGGCG
AGGACATCTCGGAGCAACTCGATATTATCAGCAGTTCATTCAGGGTGATTCGGCAAGTGCGGCGCAAGAAGGCCTGCGCC
TGTTGTGATTGCATCGTGCAGGCTGCAGCGCCAAGCCGGCCAATTGAGCGTGGCATTGCCACGGCGGGGCTGCACGCTCA
CATACTGGTTGCCAAATATGCTGATCATCAACCGCTGTACCGTCAAGCCGCGATCTATGCCCGGCAGGGCGTGGAGCTGG
ACCGCACGACCATGGCTCGCGGTGTCGGCGCTTGCGGTGCGCTGGTACGCCCCCTAGTCGAGGCTTTGCACCGATACGTG
ATGATGCCCGGCAAGGTGCATGCGGACGACACACCGCTGCCGGTACTTGCGCCAGGTAAGGGACAGACCAAGACGGGAAG
ACTATGGGCTTACGTGCGGGACGATCGCGCATCGGGTTCAGATGCTGCACCTGCAGTCTGGTTCGCCTACACACCAAATC
GCCAGGGCCAACATCCCCAAGCGCATCTGGCCGGCTTCCGCGGCATCCTGCAGGCAGACGCGTATGCGGGCTTCAACGCT
GTTTTTACCGATGGCAGTGTGCGCGAAGCAGCTTGTATGGCCCACGCGCGCCGTAAGGTGCACGATCTGCATGTCCGCAA
GGCAACGCCGACCACCACGGAGGCGTTACGCCGGATCGGCGAGCTCTATGCCATCGAAGCGGAAATCCGGGGTAAGCCAC
CTGCCGTGCGTCAACAGGTGCGGCAGCAAAGATCCCGGCCCCTACTGGACAGCCTCGAAGTGTGGTTGCGAGAGCGGCTA
TTGACGCTCTCAACGCAGTCGGAAACGACCAAAGCCATCAACTACATGCTGAACCAGTGGCAAGCGCTAATCTACTACTG
TGATGATGGTCTGGCAGAGATAGACAACAACATCGCGGAGAATGCGCTGCGCGGTGTCGCGTTGGGTCGGAAGAATTTTT
TATTCGCCGGCGCTGACAGTGGCGGCGAGCGCGCGGCCGCAATGTACTCGCTCATCGGGTCCTGCAAACTCAACGGCATC
GATCCCGAGGCCTATCTGCGTCACGTCTTGGCCCGCATCGCCGATCATCCCGTCAATCGGATCGACGGACTTCTGCCGTG
GAACGTCGCCGCTCAACTGGCGTTGCAAGCCTAA

Upstream 100 bases:

>100_bases
GTCGATGCTGCTGGAGGGGATCAACTGGAAGCAGCCCGAGCGCACCTGGCCGCCACTGTCGGTGTTGTAAACCTTGCGGC
ATGTGCGTAAACTGCCGCGC

Downstream 100 bases:

>100_bases
AGCAGCACCATTCCTGTCTCGTCGTCAACCACGGTGCTGGCGATCCGCTTACTGCGCAGCGATCCCTGCCACCGGCAATG
CTACGGACGCTGATGCGCCT

Product: putative transposase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 517; Mature: 516

Protein sequence:

>517_residues
MPIDPSDLPDDIEALKALVLAQRESIALMERALAVRSMEIEQLNLQISKLRRMQFGQKSEKLDRQIEQLETRLEDLLAEE
GAAETEADPQATPPVRKKAVRKPLPEHLEREERILEPETEACPECGGKLKPLGEDISEQLDIISSSFRVIRQVRRKKACA
CCDCIVQAAAPSRPIERGIATAGLHAHILVAKYADHQPLYRQAAIYARQGVELDRTTMARGVGACGALVRPLVEALHRYV
MMPGKVHADDTPLPVLAPGKGQTKTGRLWAYVRDDRASGSDAAPAVWFAYTPNRQGQHPQAHLAGFRGILQADAYAGFNA
VFTDGSVREAACMAHARRKVHDLHVRKATPTTTEALRRIGELYAIEAEIRGKPPAVRQQVRQQRSRPLLDSLEVWLRERL
LTLSTQSETTKAINYMLNQWQALIYYCDDGLAEIDNNIAENALRGVALGRKNFLFAGADSGGERAAAMYSLIGSCKLNGI
DPEAYLRHVLARIADHPVNRIDGLLPWNVAAQLALQA

Sequences:

>Translated_517_residues
MPIDPSDLPDDIEALKALVLAQRESIALMERALAVRSMEIEQLNLQISKLRRMQFGQKSEKLDRQIEQLETRLEDLLAEE
GAAETEADPQATPPVRKKAVRKPLPEHLEREERILEPETEACPECGGKLKPLGEDISEQLDIISSSFRVIRQVRRKKACA
CCDCIVQAAAPSRPIERGIATAGLHAHILVAKYADHQPLYRQAAIYARQGVELDRTTMARGVGACGALVRPLVEALHRYV
MMPGKVHADDTPLPVLAPGKGQTKTGRLWAYVRDDRASGSDAAPAVWFAYTPNRQGQHPQAHLAGFRGILQADAYAGFNA
VFTDGSVREAACMAHARRKVHDLHVRKATPTTTEALRRIGELYAIEAEIRGKPPAVRQQVRQQRSRPLLDSLEVWLRERL
LTLSTQSETTKAINYMLNQWQALIYYCDDGLAEIDNNIAENALRGVALGRKNFLFAGADSGGERAAAMYSLIGSCKLNGI
DPEAYLRHVLARIADHPVNRIDGLLPWNVAAQLALQA
>Mature_516_residues
PIDPSDLPDDIEALKALVLAQRESIALMERALAVRSMEIEQLNLQISKLRRMQFGQKSEKLDRQIEQLETRLEDLLAEEG
AAETEADPQATPPVRKKAVRKPLPEHLEREERILEPETEACPECGGKLKPLGEDISEQLDIISSSFRVIRQVRRKKACAC
CDCIVQAAAPSRPIERGIATAGLHAHILVAKYADHQPLYRQAAIYARQGVELDRTTMARGVGACGALVRPLVEALHRYVM
MPGKVHADDTPLPVLAPGKGQTKTGRLWAYVRDDRASGSDAAPAVWFAYTPNRQGQHPQAHLAGFRGILQADAYAGFNAV
FTDGSVREAACMAHARRKVHDLHVRKATPTTTEALRRIGELYAIEAEIRGKPPAVRQQVRQQRSRPLLDSLEVWLRERLL
TLSTQSETTKAINYMLNQWQALIYYCDDGLAEIDNNIAENALRGVALGRKNFLFAGADSGGERAAAMYSLIGSCKLNGID
PEAYLRHVLARIADHPVNRIDGLLPWNVAAQLALQA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 25 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004291 [H]

Pfam domain/function: PF03050 Transposase_25 [H]

EC number: NA

Molecular weight: Translated: 57226; Mature: 57095

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIDPSDLPDDIEALKALVLAQRESIALMERALAVRSMEIEQLNLQISKLRRMQFGQKSE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
KLDRQIEQLETRLEDLLAEEGAAETEADPQATPPVRKKAVRKPLPEHLEREERILEPETE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHH
ACPECGGKLKPLGEDISEQLDIISSSFRVIRQVRRKKACACCDCIVQAAAPSRPIERGIA
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
TAGLHAHILVAKYADHQPLYRQAAIYARQGVELDRTTMARGVGACGALVRPLVEALHRYV
HCCCHHEEEEEHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMPGKVHADDTPLPVLAPGKGQTKTGRLWAYVRDDRASGSDAAPAVWFAYTPNRQGQHPQ
CCCCEECCCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCH
AHLAGFRGILQADAYAGFNAVFTDGSVREAACMAHARRKVHDLHVRKATPTTTEALRRIG
HHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
ELYAIEAEIRGKPPAVRQQVRQQRSRPLLDSLEVWLRERLLTLSTQSETTKAINYMLNQW
HHEEEEHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
QALIYYCDDGLAEIDNNIAENALRGVALGRKNFLFAGADSGGERAAAMYSLIGSCKLNGI
HHEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCC
DPEAYLRHVLARIADHPVNRIDGLLPWNVAAQLALQA
CHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
PIDPSDLPDDIEALKALVLAQRESIALMERALAVRSMEIEQLNLQISKLRRMQFGQKSE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
KLDRQIEQLETRLEDLLAEEGAAETEADPQATPPVRKKAVRKPLPEHLEREERILEPETE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHH
ACPECGGKLKPLGEDISEQLDIISSSFRVIRQVRRKKACACCDCIVQAAAPSRPIERGIA
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
TAGLHAHILVAKYADHQPLYRQAAIYARQGVELDRTTMARGVGACGALVRPLVEALHRYV
HCCCHHEEEEEHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMPGKVHADDTPLPVLAPGKGQTKTGRLWAYVRDDRASGSDAAPAVWFAYTPNRQGQHPQ
CCCCEECCCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCH
AHLAGFRGILQADAYAGFNAVFTDGSVREAACMAHARRKVHDLHVRKATPTTTEALRRIG
HHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
ELYAIEAEIRGKPPAVRQQVRQQRSRPLLDSLEVWLRERLLTLSTQSETTKAINYMLNQW
HHEEEEHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
QALIYYCDDGLAEIDNNIAENALRGVALGRKNFLFAGADSGGERAAAMYSLIGSCKLNGI
HHEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCC
DPEAYLRHVLARIADHPVNRIDGLLPWNVAAQLALQA
CHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]