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The map label for this gene is mdcF [H]

Identifier: 37679771

GI number: 37679771

Start: 1629040

End: 1629993

Strand: Direct

Name: mdcF [H]

Synonym: VV1587

Alternate gene names: 37679771

Gene position: 1629040-1629993 (Clockwise)

Preceding gene: 37679770

Following gene: 37679772

Centisome position: 48.56

GC content: 46.54

Gene sequence:

>954_bases
ATGGATCAGCTTAGCTATGTGGTGATGACGATATTGCCAGTGTTTCTGGTTATTGGTGTTGGCTATGTTGCCTTTAAACG
AGAAATCATCCCCCACAATGGCCATAAAAGCTTAGCGGCGTTTGTGTTCAATTTTGGCTTGCCAGCGGCGATTTTCAGTG
CGCTAAGCAGTAAGCCACTTGAACAGATTTGGAATACCGATTACGTCATCGCCTATACCTTAGGTTCATTGTTGGCGTTC
GGATTAGTAGCGGTGATTGCGCTGCTTAAGTTGAAAAAATCGCCATCTCACGCCGTGATTTTGGGCTTAGGCGGAAGCTT
TTCCAACAGTTTATTGATTGGCTTTCCAATCATCTATTTTCTGTTTGGTACCCAAGCGTTAATTCCATTCTCGCTTACGC
TGGTGGTCGAAAATCTCATCATGTTGCCTTTGTTATTAACCTTGGCGGACATGTCGAGCCGAGAAAGCAAAGGCAGTCTG
AAAAAAACGGTTTTAGAGACAACGAAAAACTTGGCGAAGAATCCAATCGTGATTTCGATTGTGCTCGGCATGCTCTGTTC
GGGGCTGAATTGGCAAACACCTGAAACGGCAACGCGCATTATCGATATCTTGGCTAGCACGGTGACGGGCGTTGCGCTTT
TCACCATTGGTGGCGGCTTGGTAGGGGTGAAACTATCAGGCATGAAACAAGAGATCAGCTTGGTGATGTTAGCCAAGTTG
GTACTGCATCCAGTGATTGTGATGCTGTGTTTAATCGGTTGGTTTGAACTTGATCCAACCATGAGTGCAGTCGCGGTGAT
TTTGGCCAGTATGCCGATGTTTGGTGTGTATGCCGTCATCGGACAAAGGTACAACCTGGGAGGTATGTGCGCAGCAGTAT
TACTACCGACCACTCTGTTAGCGATGGTGACCGTGAGTGTTATGACCACCTTCGCGATGACACTATTTCAATAA

Upstream 100 bases:

>100_bases
GAACTTCATCCGCAACTGAATTTCAAGAAGAACAATATTCACCAAAAACTGGCGCAGGCTTCTCAGTAGCTTCAGGCAAA
AGTGGTTTAGGAAAGAGTAG

Downstream 100 bases:

>100_bases
GATCAGTATCTTGGAAGATCAAAACAATAACGAAGCATTGTGCGAGCAACGTATTAAACAATGCACTAGGTAAAAGGAAA
TTAAGAATGGGTAAACTCTG

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MDQLSYVVMTILPVFLVIGVGYVAFKREIIPHNGHKSLAAFVFNFGLPAAIFSALSSKPLEQIWNTDYVIAYTLGSLLAF
GLVAVIALLKLKKSPSHAVILGLGGSFSNSLLIGFPIIYFLFGTQALIPFSLTLVVENLIMLPLLLTLADMSSRESKGSL
KKTVLETTKNLAKNPIVISIVLGMLCSGLNWQTPETATRIIDILASTVTGVALFTIGGGLVGVKLSGMKQEISLVMLAKL
VLHPVIVMLCLIGWFELDPTMSAVAVILASMPMFGVYAVIGQRYNLGGMCAAVLLPTTLLAMVTVSVMTTFAMTLFQ

Sequences:

>Translated_317_residues
MDQLSYVVMTILPVFLVIGVGYVAFKREIIPHNGHKSLAAFVFNFGLPAAIFSALSSKPLEQIWNTDYVIAYTLGSLLAF
GLVAVIALLKLKKSPSHAVILGLGGSFSNSLLIGFPIIYFLFGTQALIPFSLTLVVENLIMLPLLLTLADMSSRESKGSL
KKTVLETTKNLAKNPIVISIVLGMLCSGLNWQTPETATRIIDILASTVTGVALFTIGGGLVGVKLSGMKQEISLVMLAKL
VLHPVIVMLCLIGWFELDPTMSAVAVILASMPMFGVYAVIGQRYNLGGMCAAVLLPTTLLAMVTVSVMTTFAMTLFQ
>Mature_317_residues
MDQLSYVVMTILPVFLVIGVGYVAFKREIIPHNGHKSLAAFVFNFGLPAAIFSALSSKPLEQIWNTDYVIAYTLGSLLAF
GLVAVIALLKLKKSPSHAVILGLGGSFSNSLLIGFPIIYFLFGTQALIPFSLTLVVENLIMLPLLLTLADMSSRESKGSL
KKTVLETTKNLAKNPIVISIVLGMLCSGLNWQTPETATRIIDILASTVTGVALFTIGGGLVGVKLSGMKQEISLVMLAKL
VLHPVIVMLCLIGWFELDPTMSAVAVILASMPMFGVYAVIGQRYNLGGMCAAVLLPTTLLAMVTVSVMTTFAMTLFQ

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 33946; Mature: 33946

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQLSYVVMTILPVFLVIGVGYVAFKREIIPHNGHKSLAAFVFNFGLPAAIFSALSSKPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHH
EQIWNTDYVIAYTLGSLLAFGLVAVIALLKLKKSPSHAVILGLGGSFSNSLLIGFPIIYF
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHH
LFGTQALIPFSLTLVVENLIMLPLLLTLADMSSRESKGSLKKTVLETTKNLAKNPIVISI
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
VLGMLCSGLNWQTPETATRIIDILASTVTGVALFTIGGGLVGVKLSGMKQEISLVMLAKL
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
VLHPVIVMLCLIGWFELDPTMSAVAVILASMPMFGVYAVIGQRYNLGGMCAAVLLPTTLL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
AMVTVSVMTTFAMTLFQ
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDQLSYVVMTILPVFLVIGVGYVAFKREIIPHNGHKSLAAFVFNFGLPAAIFSALSSKPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHH
EQIWNTDYVIAYTLGSLLAFGLVAVIALLKLKKSPSHAVILGLGGSFSNSLLIGFPIIYF
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHH
LFGTQALIPFSLTLVVENLIMLPLLLTLADMSSRESKGSLKKTVLETTKNLAKNPIVISI
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
VLGMLCSGLNWQTPETATRIIDILASTVTGVALFTIGGGLVGVKLSGMKQEISLVMLAKL
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
VLHPVIVMLCLIGWFELDPTMSAVAVILASMPMFGVYAVIGQRYNLGGMCAAVLLPTTLL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
AMVTVSVMTTFAMTLFQ
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]