Click here to switch to the map view.

The map label for this gene is ygiP [C]

Identifier: 37679244

GI number: 37679244

Start: 1061767

End: 1062711

Strand: Direct

Name: ygiP [C]

Synonym: VV1060

Alternate gene names: 37679244

Gene position: 1061767-1062711 (Clockwise)

Preceding gene: 37679243

Following gene: 37679245

Centisome position: 31.65

GC content: 50.37

Gene sequence:

>945_bases
ATGTTATCTGAACGCGCAGCACAAATGGTGGTTTTTGCCGCCCTCGTCAAACATCAAAACTTCACTTCTGCCGCTAAGAG
CTTAGCGGTGTCGGTTTCTCATGTCAGTAAGCAACTGGCACAACTCGAAGCATCGTTGGGGATCAAGTTGATCCAACGCA
CCACGCGCAGCTTTACACCAACTGAAGCAGGGTTGGCCTTCTATCACCATTGCCAGCAAGTGGTGCAGGCGGTGAATAAT
GCACAGCATGAAATGGAGAGCCAGCGCGATGAAATTGCCGGTTTAGTACGAATTGGCTTGTCGCAATCCTTTGGTACTTT
GCATATTCTCCCTGCCATTGATGAACTGCGCCAGAAATACCCGCTACTGCAAGTGGAAATGCACTTGTTTGATTACAAAG
TCGACATGCTGCAAGAAGGGTTAGACTTGTGGATCACCAACCATGAGCATTTACCAGAAGGCTACATTGCTCAGCGTTTA
GCGGATTGTCAGTTCGTTGTCGCGGCGTCTCCTGACTATTTGCTGCAGCATGATGCACCGAAGGAGCCCAATGATCTCGC
CAATCACAACTGCCTGATTTACCGAAGCTGGGAGCGTGACTACACCAGTTGGGCGTTTCGCCGCCAAGGGGAGCACCTTA
GCGTCAAGGTATCGGGTAATTATTCGGTCGATCTGGCTGAGGCGGTTCGGGATGCGGCGATCTCAGGGTGGGGGATTGGC
TATCTGGCGACCTACTTGCTTGGTGATGAGTTTAGAACTGGGAAACTGATTCAACTGTTGCCAGATTGGCGCGCGAATCA
GGAAATGCCATTTTATGCGGTGTATCCTAGCCGCCAGCATATGCCGAAAAAAACCTCCGCTGTCATCGATTTCATTAAAC
AAAAAATCGGTACGCCGTGTCATTGGGACAAACAGCTGGAGCCCTATGTCAGCTTCCCTGATTAG

Upstream 100 bases:

>100_bases
CTCGCATTACTTTGCACTGGCAGTGAGCCATTTGGCTGACCGCATCAAAAATTAATTCAATTCGGCTTGTGGTGTTAGCC
ACAAGCCAACAGCGATAAAC

Downstream 100 bases:

>100_bases
AGTGATTTGAGTCACAAATATTTTCTATTTCCAGAAACATATTTTCCATATGGAAACAATAAAACAAAGCAAACGTTTAT
CTTGTTTTTATTCAATAAGT

Product: transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MLSERAAQMVVFAALVKHQNFTSAAKSLAVSVSHVSKQLAQLEASLGIKLIQRTTRSFTPTEAGLAFYHHCQQVVQAVNN
AQHEMESQRDEIAGLVRIGLSQSFGTLHILPAIDELRQKYPLLQVEMHLFDYKVDMLQEGLDLWITNHEHLPEGYIAQRL
ADCQFVVAASPDYLLQHDAPKEPNDLANHNCLIYRSWERDYTSWAFRRQGEHLSVKVSGNYSVDLAEAVRDAAISGWGIG
YLATYLLGDEFRTGKLIQLLPDWRANQEMPFYAVYPSRQHMPKKTSAVIDFIKQKIGTPCHWDKQLEPYVSFPD

Sequences:

>Translated_314_residues
MLSERAAQMVVFAALVKHQNFTSAAKSLAVSVSHVSKQLAQLEASLGIKLIQRTTRSFTPTEAGLAFYHHCQQVVQAVNN
AQHEMESQRDEIAGLVRIGLSQSFGTLHILPAIDELRQKYPLLQVEMHLFDYKVDMLQEGLDLWITNHEHLPEGYIAQRL
ADCQFVVAASPDYLLQHDAPKEPNDLANHNCLIYRSWERDYTSWAFRRQGEHLSVKVSGNYSVDLAEAVRDAAISGWGIG
YLATYLLGDEFRTGKLIQLLPDWRANQEMPFYAVYPSRQHMPKKTSAVIDFIKQKIGTPCHWDKQLEPYVSFPD
>Mature_314_residues
MLSERAAQMVVFAALVKHQNFTSAAKSLAVSVSHVSKQLAQLEASLGIKLIQRTTRSFTPTEAGLAFYHHCQQVVQAVNN
AQHEMESQRDEIAGLVRIGLSQSFGTLHILPAIDELRQKYPLLQVEMHLFDYKVDMLQEGLDLWITNHEHLPEGYIAQRL
ADCQFVVAASPDYLLQHDAPKEPNDLANHNCLIYRSWERDYTSWAFRRQGEHLSVKVSGNYSVDLAEAVRDAAISGWGIG
YLATYLLGDEFRTGKLIQLLPDWRANQEMPFYAVYPSRQHMPKKTSAVIDFIKQKIGTPCHWDKQLEPYVSFPD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=298, Percent_Identity=30.5369127516779, Blast_Score=158, Evalue=4e-40,
Organism=Escherichia coli, GI87081978, Length=285, Percent_Identity=32.280701754386, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=29.0657439446367, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=27.4914089347079, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1789639, Length=287, Percent_Identity=28.9198606271777, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI145693193, Length=284, Percent_Identity=27.8169014084507, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787589, Length=299, Percent_Identity=26.0869565217391, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1789173, Length=247, Percent_Identity=26.3157894736842, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788706, Length=296, Percent_Identity=22.972972972973, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790783, Length=260, Percent_Identity=27.3076923076923, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1790011, Length=312, Percent_Identity=22.1153846153846, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1788297, Length=312, Percent_Identity=22.7564102564103, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787601, Length=172, Percent_Identity=25, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI157672245, Length=137, Percent_Identity=29.9270072992701, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790399, Length=119, Percent_Identity=35.2941176470588, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35682; Mature: 35682

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSERAAQMVVFAALVKHQNFTSAAKSLAVSVSHVSKQLAQLEASLGIKLIQRTTRSFTP
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TEAGLAFYHHCQQVVQAVNNAQHEMESQRDEIAGLVRIGLSQSFGTLHILPAIDELRQKY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHC
PLLQVEMHLFDYKVDMLQEGLDLWITNHEHLPEGYIAQRLADCQFVVAASPDYLLQHDAP
CCCEEEHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCEEEEECCCCHHCCCCCC
KEPNDLANHNCLIYRSWERDYTSWAFRRQGEHLSVKVSGNYSVDLAEAVRDAAISGWGIG
CCCCHHCCCCEEEEECCCCCHHHHHHHCCCCEEEEEECCCCCEEHHHHHHHHHHCCCCHH
YLATYLLGDEFRTGKLIQLLPDWRANQEMPFYAVYPSRQHMPKKTSAVIDFIKQKIGTPC
HHHHHHHCCCCCCCCCEEECCCCCCCCCCCEEEECCCHHCCCHHHHHHHHHHHHHCCCCC
HWDKQLEPYVSFPD
CCCCCCCCCCCCCC
>Mature Secondary Structure
MLSERAAQMVVFAALVKHQNFTSAAKSLAVSVSHVSKQLAQLEASLGIKLIQRTTRSFTP
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TEAGLAFYHHCQQVVQAVNNAQHEMESQRDEIAGLVRIGLSQSFGTLHILPAIDELRQKY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHC
PLLQVEMHLFDYKVDMLQEGLDLWITNHEHLPEGYIAQRLADCQFVVAASPDYLLQHDAP
CCCEEEHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCEEEEECCCCHHCCCCCC
KEPNDLANHNCLIYRSWERDYTSWAFRRQGEHLSVKVSGNYSVDLAEAVRDAAISGWGIG
CCCCHHCCCCEEEEECCCCCHHHHHHHCCCCEEEEEECCCCCEEHHHHHHHHHHCCCCHH
YLATYLLGDEFRTGKLIQLLPDWRANQEMPFYAVYPSRQHMPKKTSAVIDFIKQKIGTPC
HHHHHHHCCCCCCCCCEEECCCCCCCCCCCEEEECCCHHCCCHHHHHHHHHHHHHCCCCC
HWDKQLEPYVSFPD
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]