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The map label for this gene is kdkA [H]

Identifier: 37678481

GI number: 37678481

Start: 305882

End: 306592

Strand: Direct

Name: kdkA [H]

Synonym: VV0297

Alternate gene names: 37678481

Gene position: 305882-306592 (Clockwise)

Preceding gene: 37678480

Following gene: 37678482

Centisome position: 9.12

GC content: 45.99

Gene sequence:

>711_bases
ATGATTGAACAACAGCAGTTTGGTCAAAGTCGAATTTGTTACGACAGCGAATGGGTGAGTTCGCCAGAGCTGGCTTTATT
TGACCCGCAGTATTGGCAAGCACAAAACAAAGTGGTGGGAAGTGCCACTGGGCGTGGCACCACGTGGTTTGTGCAACTGC
CCAAGATCACAGCAGCACTGCGTCACTATCGTCGTGGTGGACTATTCGGCAAGTTGGTGAAAGATCACTATTGGTTTCGA
AGCTGGTCTGCAACACGCAGTTTCGCAGAATTTCATCTGCTTAAACAATTACGCGAAGCCGGGGTCAATGTACCGAGACC
GATCGCAGCCTATGCGATGAGAAAAGGGCTTTTTTACCAAGCGGACTTGCTGAGTGAACGCATTGCCAATGCGCAAGATT
TAGTGACCATACTGCAAAAACACTCACTGAATGCGGAGCTTTACCAAAAAATCGGTGTCGAAATTGCGAAAATGCATCGC
GTTGGCGTCAATCATACCGATCTTAATATTCACAATATTCTGATTGATGCGCAGGAAACGATCTGGATTATCGATTTTGA
TAAATGCTATCCGCAAGCCGGGGATGGTTGGAAACAAGAGAACTTAGATCGACTCAAACGCTCATTTAACAAAGAGCGAG
TGAAGCGAAGTATTCACTGGCACGACAAAGATTTTCAAGCCTTACTGACAGGCTACGAAAGTCAACAATAA

Upstream 100 bases:

>100_bases
CCGAGCTAAAGACATTGGTTCTGCGGCGGTGCTGGTGGCGTTGATTTTCGCTGGTTTTACATGGCTTTATATCGTTGGTA
GTCATTATTGGTGGTAAAGC

Downstream 100 bases:

>100_bases
TCGCTATTCTCATTAATAGACGTAAGTCTCAGGAAGTTAGTTACATGTCTTTTAAGCAAAAGCTGCACGCTCACGGCTGG
TTTATTTTGATTAATGCTTT

Product: 3-deoxy-D-manno-octulosonic-acid kinase

Products: NA

Alternate protein names: KDO kinase [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MIEQQQFGQSRICYDSEWVSSPELALFDPQYWQAQNKVVGSATGRGTTWFVQLPKITAALRHYRRGGLFGKLVKDHYWFR
SWSATRSFAEFHLLKQLREAGVNVPRPIAAYAMRKGLFYQADLLSERIANAQDLVTILQKHSLNAELYQKIGVEIAKMHR
VGVNHTDLNIHNILIDAQETIWIIDFDKCYPQAGDGWKQENLDRLKRSFNKERVKRSIHWHDKDFQALLTGYESQQ

Sequences:

>Translated_236_residues
MIEQQQFGQSRICYDSEWVSSPELALFDPQYWQAQNKVVGSATGRGTTWFVQLPKITAALRHYRRGGLFGKLVKDHYWFR
SWSATRSFAEFHLLKQLREAGVNVPRPIAAYAMRKGLFYQADLLSERIANAQDLVTILQKHSLNAELYQKIGVEIAKMHR
VGVNHTDLNIHNILIDAQETIWIIDFDKCYPQAGDGWKQENLDRLKRSFNKERVKRSIHWHDKDFQALLTGYESQQ
>Mature_236_residues
MIEQQQFGQSRICYDSEWVSSPELALFDPQYWQAQNKVVGSATGRGTTWFVQLPKITAALRHYRRGGLFGKLVKDHYWFR
SWSATRSFAEFHLLKQLREAGVNVPRPIAAYAMRKGLFYQADLLSERIANAQDLVTILQKHSLNAELYQKIGVEIAKMHR
VGVNHTDLNIHNILIDAQETIWIIDFDKCYPQAGDGWKQENLDRLKRSFNKERVKRSIHWHDKDFQALLTGYESQQ

Specific function: ATP-dependent phosphorylation of 3-deoxy-D-manno- octulosonic acid at the 4-OH position [H]

COG id: COG0515

COG function: function code RTKL; Serine/threonine protein kinase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein kinase superfamily. KdkA/rfaP family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020636
- InterPro:   IPR022826
- InterPro:   IPR011009
- InterPro:   IPR010440
- InterPro:   IPR020659 [H]

Pfam domain/function: PF06293 Kdo [H]

EC number: NA

Molecular weight: Translated: 27509; Mature: 27509

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEQQQFGQSRICYDSEWVSSPELALFDPQYWQAQNKVVGSATGRGTTWFVQLPKITAAL
CCCCHHCCCCCCCCCCCCCCCCCEEEECCHHHHHHCCEEECCCCCCEEEEEECHHHHHHH
RHYRRGGLFGKLVKDHYWFRSWSATRSFAEFHLLKQLREAGVNVPRPIAAYAMRKGLFYQ
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHH
ADLLSERIANAQDLVTILQKHSLNAELYQKIGVEIAKMHRVGVNHTDLNIHNILIDAQET
HHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCE
IWIIDFDKCYPQAGDGWKQENLDRLKRSFNKERVKRSIHWHDKDFQALLTGYESQQ
EEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure
MIEQQQFGQSRICYDSEWVSSPELALFDPQYWQAQNKVVGSATGRGTTWFVQLPKITAAL
CCCCHHCCCCCCCCCCCCCCCCCEEEECCHHHHHHCCEEECCCCCCEEEEEECHHHHHHH
RHYRRGGLFGKLVKDHYWFRSWSATRSFAEFHLLKQLREAGVNVPRPIAAYAMRKGLFYQ
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHH
ADLLSERIANAQDLVTILQKHSLNAELYQKIGVEIAKMHRVGVNHTDLNIHNILIDAQET
HHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCE
IWIIDFDKCYPQAGDGWKQENLDRLKRSFNKERVKRSIHWHDKDFQALLTGYESQQ
EEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA