| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is yejM [H]
Identifier: 37678482
GI number: 37678482
Start: 306637
End: 308472
Strand: Direct
Name: yejM [H]
Synonym: VV0298
Alternate gene names: 37678482
Gene position: 306637-308472 (Clockwise)
Preceding gene: 37678481
Following gene: 37678483
Centisome position: 9.14
GC content: 47.49
Gene sequence:
>1836_bases ATGTCTTTTAAGCAAAAGCTGCACGCTCACGGCTGGTTTATTTTGATTAATGCTTTGGTGTTAATGTTGATTGCTAGCCG TTATTTCGCCTTTCTGCCAGAGTTCCCGACGGATCCATTAGGCATCACCTTTATTCTTGCTGGTACTTGGGGGCAGATGA CGCTGCTTGCTGCGCTCATTGGTTTAGTGACCATTCCCACCTTATTTTTGCCGAAACCATTTCGTAATGGTACCCAAGCT CTAATTGCTTCGTTAGGCGTCGCGACTTTGTTTATTGATACCATCGTGTTTGCACAGTATCGATTCCATATTAATGCGGT GGTGCTAGAGCTCGTGATGTCGGGACAAATTGTTAGCTTCCCGTTGATCACTTGGTTAATGGTGATTGGTGGTGTTGCTT TGTTGTTGGCCGCTCAGTGGTGGACAATTCGCTGGCTAGAAAATGGTGCACCCGTCAGAGCGCTGAAACTTGGCCGCAAA TTTGCGTTGTTGACTTTTGCCGCGCTACTGGCCACCAACGCGATTCATATTTGGGCCGCAGCGCATGCCTATCAACCGGT GACCACGGTGAAGCGCTATTTACCGCTGTTTTATCCTGCTACAGCAGATAAATTTATGCGCAAACAAGGTTGGGTGGATG AAGAGGCGCTTGAGCGTCAAAAGGCACTGGCGTTTAAACGCAAAAATGATTTGAATTACCCATTAGCACCACTTCAAACA CAACCTGTAGAGAAACCGCTCAATATTATGTTGCTGGTGGTGGATTCTTGGCGCGCCGATACCTTCAACGCAGACAATAC GCCAAACATGTGGAAATACGCGCAGTCGGGTGTGGTTTTCAATAATCACATCGCGACAGGCAACGCGACCCGCACAGGTA TCTTTGGTCTTTTCTACGGCATTCCGGGCACCTACTGGCATGGCTTCTTAGCAAACCAACAAAGCCCGGTACTGATCGAC CGTCTACAGGCTCTGGACTACCAATTAGGTATTTTCACTGCCGCTCAGTTGCGTAAACCGGAATTCAATCAAACGGTTTT CACCAAAGTAGAAAACTTACGTATTGGCTCTGAAGGTAGCCGCCCGTCTGAGCTGGATGCTGACCTCACTCAAGATTGGT TAGCTTGGTACGATCAACGTGATAAGTCGAAGCCAACGTTCTCTTTCTTGTTTTACGATGCGCCACATGGCTACGATTTC CCTGCAGATTTTGAGCCGAAATACGAACCGATGCTCAAAGAGGTGAATTATCTCAAGCTGAACAACGACACGGATCCGAC GCCATTTTTCAATCGCTACAAAACCAGCGTGCGTTATGTCGATTCAATGGCAACAAAAGTGCTCGATAAACTCAAAGAGA GTGGCGATCTGGAAAACACCTTGGTGATCATTACCGGTGACCATGGGCAAGAGATGAACGACAACAAACTCAACTTCTGG GGGCACAACAGCAACTTTACCGATGCGCAGGTCAACGTGCCGTTTGCTATCTTTGGCCCTGGCGTTGATGCGGCGAAGAT GCAGTGGAGTAGCGAAGCGCTCACCAGTCACCAAGATGTTGTACCGACGTTGATGAAGCACTATCTCGGCGTGAGCAACG ATGTGAAAGATTACTCGGTTGGCGAAGATTTACTCGGTGATGCAGTAAAACGTGATTGGATCATTTCCTCAAACTACAGC GGTTATGCCATTATTACCGATGACAATATCCTAGAAGTGAGTGGCGGTGGCCAGTACCAATTTATGGACAAAACCAATCT CCAGTTGAAAGACCAACAACCGAATTTTACCTATCTGCAGCAAGCCTTAGAGCAGATCAGCCGATTCAGTAAATAA
Upstream 100 bases:
>100_bases ACTGGCACGACAAAGATTTTCAAGCCTTACTGACAGGCTACGAAAGTCAACAATAATCGCTATTCTCATTAATAGACGTA AGTCTCAGGAAGTTAGTTAC
Downstream 100 bases:
>100_bases AAAGGCAAACTATGACACGGAAAGCTTCTCTCATCATCGCGTTCTACAACAACACGCAAGCGCTTGGTTTAATTTTTAAA GCACTCTCAGCGCAATCCTG
Product: hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 611; Mature: 610
Protein sequence:
>611_residues MSFKQKLHAHGWFILINALVLMLIASRYFAFLPEFPTDPLGITFILAGTWGQMTLLAALIGLVTIPTLFLPKPFRNGTQA LIASLGVATLFIDTIVFAQYRFHINAVVLELVMSGQIVSFPLITWLMVIGGVALLLAAQWWTIRWLENGAPVRALKLGRK FALLTFAALLATNAIHIWAAAHAYQPVTTVKRYLPLFYPATADKFMRKQGWVDEEALERQKALAFKRKNDLNYPLAPLQT QPVEKPLNIMLLVVDSWRADTFNADNTPNMWKYAQSGVVFNNHIATGNATRTGIFGLFYGIPGTYWHGFLANQQSPVLID RLQALDYQLGIFTAAQLRKPEFNQTVFTKVENLRIGSEGSRPSELDADLTQDWLAWYDQRDKSKPTFSFLFYDAPHGYDF PADFEPKYEPMLKEVNYLKLNNDTDPTPFFNRYKTSVRYVDSMATKVLDKLKESGDLENTLVIITGDHGQEMNDNKLNFW GHNSNFTDAQVNVPFAIFGPGVDAAKMQWSSEALTSHQDVVPTLMKHYLGVSNDVKDYSVGEDLLGDAVKRDWIISSNYS GYAIITDDNILEVSGGGQYQFMDKTNLQLKDQQPNFTYLQQALEQISRFSK
Sequences:
>Translated_611_residues MSFKQKLHAHGWFILINALVLMLIASRYFAFLPEFPTDPLGITFILAGTWGQMTLLAALIGLVTIPTLFLPKPFRNGTQA LIASLGVATLFIDTIVFAQYRFHINAVVLELVMSGQIVSFPLITWLMVIGGVALLLAAQWWTIRWLENGAPVRALKLGRK FALLTFAALLATNAIHIWAAAHAYQPVTTVKRYLPLFYPATADKFMRKQGWVDEEALERQKALAFKRKNDLNYPLAPLQT QPVEKPLNIMLLVVDSWRADTFNADNTPNMWKYAQSGVVFNNHIATGNATRTGIFGLFYGIPGTYWHGFLANQQSPVLID RLQALDYQLGIFTAAQLRKPEFNQTVFTKVENLRIGSEGSRPSELDADLTQDWLAWYDQRDKSKPTFSFLFYDAPHGYDF PADFEPKYEPMLKEVNYLKLNNDTDPTPFFNRYKTSVRYVDSMATKVLDKLKESGDLENTLVIITGDHGQEMNDNKLNFW GHNSNFTDAQVNVPFAIFGPGVDAAKMQWSSEALTSHQDVVPTLMKHYLGVSNDVKDYSVGEDLLGDAVKRDWIISSNYS GYAIITDDNILEVSGGGQYQFMDKTNLQLKDQQPNFTYLQQALEQISRFSK >Mature_610_residues SFKQKLHAHGWFILINALVLMLIASRYFAFLPEFPTDPLGITFILAGTWGQMTLLAALIGLVTIPTLFLPKPFRNGTQAL IASLGVATLFIDTIVFAQYRFHINAVVLELVMSGQIVSFPLITWLMVIGGVALLLAAQWWTIRWLENGAPVRALKLGRKF ALLTFAALLATNAIHIWAAAHAYQPVTTVKRYLPLFYPATADKFMRKQGWVDEEALERQKALAFKRKNDLNYPLAPLQTQ PVEKPLNIMLLVVDSWRADTFNADNTPNMWKYAQSGVVFNNHIATGNATRTGIFGLFYGIPGTYWHGFLANQQSPVLIDR LQALDYQLGIFTAAQLRKPEFNQTVFTKVENLRIGSEGSRPSELDADLTQDWLAWYDQRDKSKPTFSFLFYDAPHGYDFP ADFEPKYEPMLKEVNYLKLNNDTDPTPFFNRYKTSVRYVDSMATKVLDKLKESGDLENTLVIITGDHGQEMNDNKLNFWG HNSNFTDAQVNVPFAIFGPGVDAAKMQWSSEALTSHQDVVPTLMKHYLGVSNDVKDYSVGEDLLGDAVKRDWIISSNYSG YAIITDDNILEVSGGGQYQFMDKTNLQLKDQQPNFTYLQQALEQISRFSK
Specific function: Unknown
COG id: COG3083
COG function: function code R; Predicted hydrolase of alkaline phosphatase superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0842 [H]
Homologues:
Organism=Escherichia coli, GI1788515, Length=610, Percent_Identity=29.016393442623, Blast_Score=245, Evalue=8e-66,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR012159 - InterPro: IPR000917 [H]
Pfam domain/function: PF00884 Sulfatase [H]
EC number: NA
Molecular weight: Translated: 69069; Mature: 68938
Theoretical pI: Translated: 6.66; Mature: 6.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFKQKLHAHGWFILINALVLMLIASRYFAFLPEFPTDPLGITFILAGTWGQMTLLAALI CCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHH GLVTIPTLFLPKPFRNGTQALIASLGVATLFIDTIVFAQYRFHINAVVLELVMSGQIVSF HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH PLITWLMVIGGVALLLAAQWWTIRWLENGAPVRALKLGRKFALLTFAALLATNAIHIWAA HHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCHHEEEEH AHAYQPVTTVKRYLPLFYPATADKFMRKQGWVDEEALERQKALAFKRKNDLNYPLAPLQT HHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC QPVEKPLNIMLLVVDSWRADTFNADNTPNMWKYAQSGVVFNNHIATGNATRTGIFGLFYG CCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHCCEEEECEEECCCCCHHHHHHHHHC IPGTYWHGFLANQQSPVLIDRLQALDYQLGIFTAAQLRKPEFNQTVFTKVENLRIGSEGS CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEECCCCC RPSELDADLTQDWLAWYDQRDKSKPTFSFLFYDAPHGYDFPADFEPKYEPMLKEVNYLKL CCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHCCCEEEE NNDTDPTPFFNRYKTSVRYVDSMATKVLDKLKESGDLENTLVIITGDHGQEMNDNKLNFW CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEE GHNSNFTDAQVNVPFAIFGPGVDAAKMQWSSEALTSHQDVVPTLMKHYLGVSNDVKDYSV ECCCCCCCCEEECCEEEECCCCCHHHHCCCHHHHHCHHHHHHHHHHHHCCCCCCCCCCCC GEDLLGDAVKRDWIISSNYSGYAIITDDNILEVSGGGQYQFMDKTNLQLKDQQPNFTYLQ CHHHHHHHHHCCEEEECCCCCEEEEECCCEEEECCCCEEEEECCCCCEEECCCCCHHHHH QALEQISRFSK HHHHHHHHHCC >Mature Secondary Structure SFKQKLHAHGWFILINALVLMLIASRYFAFLPEFPTDPLGITFILAGTWGQMTLLAALI CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHH GLVTIPTLFLPKPFRNGTQALIASLGVATLFIDTIVFAQYRFHINAVVLELVMSGQIVSF HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH PLITWLMVIGGVALLLAAQWWTIRWLENGAPVRALKLGRKFALLTFAALLATNAIHIWAA HHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCHHEEEEH AHAYQPVTTVKRYLPLFYPATADKFMRKQGWVDEEALERQKALAFKRKNDLNYPLAPLQT HHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC QPVEKPLNIMLLVVDSWRADTFNADNTPNMWKYAQSGVVFNNHIATGNATRTGIFGLFYG CCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHCCEEEECEEECCCCCHHHHHHHHHC IPGTYWHGFLANQQSPVLIDRLQALDYQLGIFTAAQLRKPEFNQTVFTKVENLRIGSEGS CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEECCCCC RPSELDADLTQDWLAWYDQRDKSKPTFSFLFYDAPHGYDFPADFEPKYEPMLKEVNYLKL CCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHCCCEEEE NNDTDPTPFFNRYKTSVRYVDSMATKVLDKLKESGDLENTLVIITGDHGQEMNDNKLNFW CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEE GHNSNFTDAQVNVPFAIFGPGVDAAKMQWSSEALTSHQDVVPTLMKHYLGVSNDVKDYSV ECCCCCCCCEEECCEEEECCCCCHHHHCCCHHHHHCHHHHHHHHHHHHCCCCCCCCCCCC GEDLLGDAVKRDWIISSNYSGYAIITDDNILEVSGGGQYQFMDKTNLQLKDQQPNFTYLQ CHHHHHHHHHCCEEEECCCCCEEEEECCCEEEECCCCEEEEECCCCCEEECCCCCHHHHH QALEQISRFSK HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]