BacMap

Definition	Gloeobacter violaceus PCC 7421 chromosome, complete genome.
Accession	NC_005125
Length	4,659,019

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The map label for this gene is rfbB [H]

Identifier: 37522903

GI number: 37522903

Start: 3540393

End: 3541151

Strand: Reverse

Name: rfbB [H]

Synonym: gll3334

Alternate gene names: 37522903

Gene position: 3541151-3540393 (Counterclockwise)

Preceding gene: 37522904

Following gene: 37522902

Centisome position: 76.01

GC content: 62.71

Gene sequence:

>759_bases
TTGGAAGCCATTCGACTCAGCAACGTTTCTCTCTGGCGGCGCACCCAGGAAGAATTCTCCTACGACCTCAAAAAAACTGT
CCTGACTATTTTGGACGGCCGCTACCGCAAGCCCGGCCGCAAGCAGGTGCTCGCAGGCGTTGATCTGACGATCGAAAGCG
GCGAGAAAGTCGGGATCGTGGGCTCGAACGGCTCGGGCAAATCGACCCTGCTCAAGGTGATCTGCGGCATCCTCAAGCCG
ACCACCGGCGAGGTGCACGTGCGCGGGGCGATTGCACCCCTGATTGAACTGGGGGCGGGCTTCGACTCGGATCTGTCGCT
GGTCGACAACATCGTGCTCTACGGTGTGCTGCTCGGGTTCTCGCGCCGCGAGATGCGCGCTCGGGTGCGGCCTATCCTCG
AATTTGCCGACTTGGCCGCTTACGCCGATGCACCGGTTAAGACGCTCTCCTCGGGGATGACCGCCCGGCTTGGCTTTGCC
ATCGCCACCGACGTGCCGCCGGATATTTTGATCCTCGACGAGGTGCTCTCGGTGGGTGACGAGCGCTTTAAGAGCAAGTG
CCGCGGTCGGCTGGAGCAGTACTGGGGAGAAAATGCGACGGTGCTAGTGGTTTCCCACGATTTGCCCTATATCGAGCAAA
GCTGCGAGCGGGTGGTGTGGATGAACGGCGGCCGGGTGATGCGCTCCGGTCCCCCCGCCGAGGTGATCGCAAGCTACTTG
CACTCGACGCAGATCCCCGCCGGCGCCGAGCGGGGCTGA

Upstream 100 bases:

>100_bases
CGGTTGGGCGCTGTTCCACGCCTGGTCCGATCGCTACATGGACTTGTTGTAGCCTGGTCAACTGCGCTAGTCTGCCTAAA
GGTTCATCCGCAACATCCCA

Downstream 100 bases:

>100_bases
GGTGCCCACGAGCGCTTCGCAAATGTTTCAGGCTATGCTTTTATCTGGCCATTCGCTCCGGTCCCAGCGCGCATGATTGG
CAAAGTAGGCGGGGATCCCA

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MEAIRLSNVSLWRRTQEEFSYDLKKTVLTILDGRYRKPGRKQVLAGVDLTIESGEKVGIVGSNGSGKSTLLKVICGILKP
TTGEVHVRGAIAPLIELGAGFDSDLSLVDNIVLYGVLLGFSRREMRARVRPILEFADLAAYADAPVKTLSSGMTARLGFA
IATDVPPDILILDEVLSVGDERFKSKCRGRLEQYWGENATVLVVSHDLPYIEQSCERVVWMNGGRVMRSGPPAEVIASYL
HSTQIPAGAERG

Sequences:

>Translated_252_residues
MEAIRLSNVSLWRRTQEEFSYDLKKTVLTILDGRYRKPGRKQVLAGVDLTIESGEKVGIVGSNGSGKSTLLKVICGILKP
TTGEVHVRGAIAPLIELGAGFDSDLSLVDNIVLYGVLLGFSRREMRARVRPILEFADLAAYADAPVKTLSSGMTARLGFA
IATDVPPDILILDEVLSVGDERFKSKCRGRLEQYWGENATVLVVSHDLPYIEQSCERVVWMNGGRVMRSGPPAEVIASYL
HSTQIPAGAERG
>Mature_252_residues
MEAIRLSNVSLWRRTQEEFSYDLKKTVLTILDGRYRKPGRKQVLAGVDLTIESGEKVGIVGSNGSGKSTLLKVICGILKP
TTGEVHVRGAIAPLIELGAGFDSDLSLVDNIVLYGVLLGFSRREMRARVRPILEFADLAAYADAPVKTLSSGMTARLGFA
IATDVPPDILILDEVLSVGDERFKSKCRGRLEQYWGENATVLVVSHDLPYIEQSCERVVWMNGGRVMRSGPPAEVIASYL
HSTQIPAGAERG

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=201, Percent_Identity=26.3681592039801, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI153792144, Length=226, Percent_Identity=26.9911504424779, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI27477115, Length=206, Percent_Identity=27.6699029126214, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI31657092, Length=225, Percent_Identity=27.1111111111111, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI6005701, Length=208, Percent_Identity=27.4038461538462, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI27262624, Length=219, Percent_Identity=25.5707762557078, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI27262626, Length=219, Percent_Identity=25.5707762557078, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI27881501, Length=200, Percent_Identity=23.5, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI30795238, Length=200, Percent_Identity=23.5, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI45446740, Length=205, Percent_Identity=28.2926829268293, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI47078218, Length=205, Percent_Identity=28.2926829268293, Blast_Score=69, Evalue=5e-12,
Organism=Escherichia coli, GI87081709, Length=213, Percent_Identity=30.0469483568075, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788761, Length=214, Percent_Identity=31.7757009345794, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1789891, Length=217, Percent_Identity=30.4147465437788, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789032, Length=207, Percent_Identity=29.4685990338164, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081782, Length=226, Percent_Identity=30.9734513274336, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787029, Length=216, Percent_Identity=29.6296296296296, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788225, Length=211, Percent_Identity=26.5402843601896, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI48994943, Length=232, Percent_Identity=29.7413793103448, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790467, Length=202, Percent_Identity=31.1881188118812, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789873, Length=203, Percent_Identity=28.0788177339901, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787182, Length=213, Percent_Identity=29.1079812206573, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1787105, Length=209, Percent_Identity=29.1866028708134, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787758, Length=241, Percent_Identity=26.9709543568465, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786319, Length=219, Percent_Identity=26.9406392694064, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786703, Length=203, Percent_Identity=30.5418719211823, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787370, Length=207, Percent_Identity=26.5700483091787, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786563, Length=210, Percent_Identity=27.6190476190476, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082267, Length=208, Percent_Identity=26.4423076923077, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI87081791, Length=208, Percent_Identity=25.4807692307692, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788165, Length=219, Percent_Identity=29.2237442922374, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1786872, Length=208, Percent_Identity=27.8846153846154, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1790525, Length=214, Percent_Identity=28.0373831775701, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787712, Length=219, Percent_Identity=26.027397260274, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787792, Length=233, Percent_Identity=27.0386266094421, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790739, Length=232, Percent_Identity=28.448275862069, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI48995001, Length=206, Percent_Identity=25.7281553398058, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788450, Length=212, Percent_Identity=25.9433962264151, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789593, Length=210, Percent_Identity=24.2857142857143, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=248, Percent_Identity=28.2258064516129, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI193202349, Length=238, Percent_Identity=26.0504201680672, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=214, Percent_Identity=25.2336448598131, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI71983516, Length=214, Percent_Identity=25.2336448598131, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=214, Percent_Identity=25.2336448598131, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI115533608, Length=211, Percent_Identity=24.1706161137441, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI116007184, Length=194, Percent_Identity=26.8041237113402, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI221500365, Length=187, Percent_Identity=27.807486631016, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24650855, Length=219, Percent_Identity=26.9406392694064, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24650853, Length=219, Percent_Identity=26.9406392694064, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI281362751, Length=219, Percent_Identity=26.9406392694064, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24648279, Length=257, Percent_Identity=27.6264591439689, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI161078426, Length=257, Percent_Identity=27.6264591439689, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24585091, Length=210, Percent_Identity=27.6190476190476, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: 3.6.3.30 [C]

Molecular weight: Translated: 27486; Mature: 27486

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAIRLSNVSLWRRTQEEFSYDLKKTVLTILDGRYRKPGRKQVLAGVDLTIESGEKVGIV
CCCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEECCCEEEEE
GSNGSGKSTLLKVICGILKPTTGEVHVRGAIAPLIELGAGFDSDLSLVDNIVLYGVLLGF
ECCCCCHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
SRREMRARVRPILEFADLAAYADAPVKTLSSGMTARLGFAIATDVPPDILILDEVLSVGD
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHCEEEECCCCCCHHHHHHHHHCCH
ERFKSKCRGRLEQYWGENATVLVVSHDLPYIEQSCERVVWMNGGRVMRSGPPAEVIASYL
HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCEEEEECCCEEECCCCCHHHHHHHH
HSTQIPAGAERG
HHCCCCCCCCCC
>Mature Secondary Structure
MEAIRLSNVSLWRRTQEEFSYDLKKTVLTILDGRYRKPGRKQVLAGVDLTIESGEKVGIV
CCCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEECCCEEEEE
GSNGSGKSTLLKVICGILKPTTGEVHVRGAIAPLIELGAGFDSDLSLVDNIVLYGVLLGF
ECCCCCHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
SRREMRARVRPILEFADLAAYADAPVKTLSSGMTARLGFAIATDVPPDILILDEVLSVGD
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHCEEEECCCCCCHHHHHHHHHCCH
ERFKSKCRGRLEQYWGENATVLVVSHDLPYIEQSCERVVWMNGGRVMRSGPPAEVIASYL
HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCEEEEECCCEEECCCCCHHHHHHHH
HSTQIPAGAERG
HHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]